Wall clock time and date at job start Tue Mar 31 2020 21:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.58301 * 2 1 4 4 C 1.53193 * 109.58587 * 120.43023 * 2 1 3 5 5 H 1.08996 * 109.49752 * 54.47198 * 4 2 1 6 6 N 1.46494 * 109.49855 * 294.40385 * 4 2 1 7 7 C 1.34777 * 120.00349 * 154.99894 * 6 4 2 8 8 O 1.21538 * 119.99346 * 0.02562 * 7 6 4 9 9 C 1.47999 * 120.00264 * 179.97438 * 7 6 4 10 10 N 1.34189 * 126.70074 * 0.03064 * 9 7 6 11 11 N 1.28976 * 107.25134 * 179.97438 * 10 9 7 12 12 N 1.28718 * 108.99451 * 359.97438 * 11 10 9 13 13 C 1.46497 * 125.32593 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47073 * 359.97438 * 13 12 11 15 15 C 1.53000 * 109.47225 * 119.97607 * 13 12 11 16 16 C 1.52995 * 109.47656 * 239.97928 * 13 12 11 17 17 N 1.28873 * 109.35355 * 359.73118 * 12 11 10 18 18 C 1.53044 * 109.31142 * 174.42054 * 4 2 1 19 19 C 1.53043 * 109.53900 * 298.63512 * 18 4 2 20 20 C 1.52762 * 109.38024 * 61.24120 * 19 18 4 21 21 N 1.46923 * 109.00850 * 305.58475 * 20 19 18 22 22 C 1.36936 * 120.63133 * 233.58986 * 21 20 19 23 23 H 1.08002 * 120.00023 * 150.98059 * 22 21 20 24 24 C 1.38812 * 119.99954 * 330.97980 * 22 21 20 25 25 N 1.31617 * 120.00004 * 343.83473 * 24 22 21 26 26 Si 1.86802 * 119.99969 * 163.83966 * 24 22 21 27 27 H 1.48501 * 109.47353 * 84.97960 * 26 24 22 28 28 H 1.48495 * 109.47319 * 324.97580 * 26 24 22 29 29 H 1.48501 * 109.47125 * 204.97810 * 26 24 22 30 30 H 1.09002 * 109.46963 * 180.28259 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.28088 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.28497 * 1 2 3 33 33 H 0.96998 * 120.00016 * 335.00693 * 6 4 2 34 34 H 1.09000 * 109.47221 * 59.99163 * 14 13 12 35 35 H 1.08995 * 109.47351 * 179.97438 * 14 13 12 36 36 H 1.09001 * 109.46935 * 300.00321 * 14 13 12 37 37 H 1.09001 * 109.47053 * 59.99864 * 15 13 12 38 38 H 1.08995 * 109.47537 * 180.02562 * 15 13 12 39 39 H 1.09011 * 109.47148 * 300.00474 * 15 13 12 40 40 H 1.09002 * 109.47314 * 59.99743 * 16 13 12 41 41 H 1.09000 * 109.47367 * 179.97438 * 16 13 12 42 42 H 1.08996 * 109.46992 * 300.00110 * 16 13 12 43 43 H 1.09003 * 109.45591 * 58.65791 * 18 4 2 44 44 H 1.08992 * 109.46157 * 178.61155 * 18 4 2 45 45 H 1.08995 * 109.49542 * 181.31386 * 19 18 4 46 46 H 1.08995 * 109.49583 * 301.41030 * 19 18 4 47 47 H 1.09006 * 109.50749 * 185.70770 * 20 19 18 48 48 H 1.08994 * 109.43486 * 65.42636 * 20 19 18 49 49 H 0.97001 * 120.00094 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 1 1.6030 -1.7270 1.2891 6 7 1.6699 0.0231 2.4435 7 6 1.5465 -0.6102 3.6268 8 8 1.7457 -1.8070 3.6990 9 6 1.1696 0.1517 4.8383 10 7 0.9204 1.4682 4.9125 11 7 0.6281 1.7336 6.1403 12 7 0.6837 0.6472 6.8284 13 6 0.4165 0.5397 8.2648 14 6 0.0614 1.9196 8.8222 15 6 -0.7525 -0.4200 8.4957 16 6 1.6617 0.0073 8.9768 17 7 1.0061 -0.3321 6.0552 18 6 3.5675 -0.8495 1.1690 19 6 3.9569 -1.6657 -0.0657 20 6 3.4645 -0.9502 -1.3223 21 7 2.0226 -0.6980 -1.1954 22 6 1.1537 -1.1107 -2.1700 23 1 0.1348 -1.3616 -1.9141 24 6 1.5824 -1.2067 -3.4867 25 7 2.6962 -0.6138 -3.8611 26 14 0.5783 -2.1772 -4.7275 27 1 -0.4893 -1.3100 -5.2873 28 1 -0.0377 -3.3502 -4.0568 29 1 1.4638 -2.6431 -5.8248 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.5112 0.9783 2.3859 34 1 -0.8256 2.2991 8.3150 35 1 -0.1378 1.8396 9.8908 36 1 0.8942 2.6032 8.6576 37 1 -0.4994 -1.4031 8.0986 38 1 -0.9516 -0.4997 9.5644 39 1 -1.6397 -0.0407 7.9885 40 1 2.4945 0.6909 8.8123 41 1 1.4630 -0.0723 10.0456 42 1 1.9148 -0.9758 8.5798 43 1 4.0061 0.1459 1.0995 44 1 3.9379 -1.3475 2.0650 45 1 5.0412 -1.7695 -0.1060 46 1 3.4984 -2.6528 -0.0087 47 1 3.6504 -1.5769 -2.1946 48 1 3.9929 -0.0031 -1.4310 49 1 2.9955 -0.6805 -4.7813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993336572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:19 Heat of formation + Delta-G solvation = 88.025640 kcal Electronic energy + Delta-G solvation = -29869.337924 eV Core-core repulsion = 25869.401203 eV Total energy + Delta-G solvation = -3999.936721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.60448 -41.19212 -39.31900 -38.59317 -36.06459 -34.70421 -34.36503 -33.68032 -33.27877 -31.02850 -28.64831 -28.53337 -28.04769 -26.97738 -26.25338 -25.61098 -23.78148 -22.34225 -22.13936 -21.57322 -21.14028 -19.16312 -18.55543 -18.25618 -17.74034 -17.41696 -16.77487 -16.21714 -15.88952 -15.59207 -15.38086 -15.26177 -15.19718 -15.08830 -14.90252 -14.53528 -14.30454 -14.04395 -13.48162 -13.34790 -13.28369 -13.27491 -13.22158 -12.84227 -12.78551 -12.73252 -12.63660 -12.51595 -12.39204 -12.35802 -12.11550 -12.10878 -12.02056 -11.87962 -11.79747 -11.70230 -11.47510 -11.44492 -11.13807 -10.50689 -10.18565 -8.64630 -7.83953 -5.28864 -0.16734 0.25165 0.63743 1.48021 1.50507 1.58480 1.65595 1.87742 2.53179 2.78398 2.94633 3.31815 3.48983 3.55629 3.62890 3.67194 3.85351 3.97108 4.02489 4.20166 4.29892 4.37006 4.41891 4.49362 4.53066 4.59933 4.60858 4.61918 4.73445 4.73678 4.75066 4.89205 4.91805 5.02773 5.03532 5.11526 5.12727 5.15147 5.18194 5.22941 5.25411 5.39731 5.45863 5.58746 5.72963 5.78619 6.23352 6.43348 6.84451 7.03907 7.18439 7.88016 8.39573 9.23421 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.002356 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.831423 B =11879.327909 C =12187.511032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.165 3.835 3 H 0.036 0.964 4 C 0.147 3.853 5 H 0.070 0.930 6 N -0.680 5.680 7 C 0.619 3.381 8 O -0.544 6.544 9 C 0.116 3.884 10 N -0.266 5.266 11 N -0.057 5.057 12 N -0.109 5.109 13 C 0.159 3.841 14 C -0.150 4.150 15 C -0.158 4.158 16 C -0.158 4.158 17 N -0.257 5.257 18 C -0.112 4.112 19 C -0.128 4.128 20 C 0.174 3.826 21 N -0.598 5.598 22 C -0.253 4.253 23 H 0.073 0.927 24 C -0.048 4.048 25 N -0.932 5.932 26 Si 0.960 3.040 27 H -0.283 1.283 28 H -0.275 1.275 29 H -0.295 1.295 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.418 0.582 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.130 0.870 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.004 0.996 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 4.829 29.623 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 H 0.053 0.947 4 C 0.041 3.959 5 H 0.088 0.912 6 N -0.332 5.332 7 C 0.399 3.601 8 O -0.419 6.419 9 C -0.168 4.168 10 N -0.140 5.140 11 N -0.049 5.049 12 N -0.026 5.026 13 C 0.081 3.919 14 C -0.208 4.208 15 C -0.216 4.216 16 C -0.216 4.216 17 N -0.111 5.111 18 C -0.151 4.151 19 C -0.168 4.168 20 C 0.049 3.951 21 N -0.322 5.322 22 C -0.383 4.383 23 H 0.091 0.909 24 C -0.244 4.244 25 N -0.578 5.578 26 Si 0.789 3.211 27 H -0.210 1.210 28 H -0.200 1.200 29 H -0.221 1.221 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.148 0.852 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.023 0.977 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.230 4.474 29.848 30.477 hybrid contribution -0.122 -0.459 -1.651 1.718 sum -4.353 4.015 28.197 28.812 Atomic orbital electron populations 1.21759 0.94475 1.01275 1.01289 1.20690 0.94309 0.93611 0.85558 0.94652 1.21551 0.95561 0.95771 0.82994 0.91166 1.45656 1.67896 1.13273 1.06357 1.16215 0.77558 0.85256 0.81086 1.90829 1.51239 1.14715 1.85071 1.25094 1.07309 0.90214 0.94166 1.76116 1.15523 1.12327 1.10046 1.78798 1.15778 1.12642 0.97669 1.51337 1.37747 1.00813 1.12687 1.22231 0.99837 1.01912 0.67968 1.22182 1.03398 0.91112 1.04065 1.22315 0.94913 0.97995 1.06403 1.22311 0.94298 1.01702 1.03272 1.74959 1.16594 1.18100 1.01482 1.21725 0.94681 1.00754 0.97910 1.21945 1.00561 0.98831 0.95420 1.20576 0.83061 0.96269 0.95211 1.44255 1.03284 1.65886 1.18799 1.19428 0.95093 1.37045 0.86749 0.90936 1.25739 0.99084 1.00948 0.98607 1.70170 1.25466 1.45454 1.16755 0.85402 0.77919 0.78982 0.78790 1.20981 1.20016 1.22105 0.93667 0.91135 0.92949 0.74507 0.91158 0.85421 0.91099 0.91897 0.85201 0.91972 0.91904 0.85205 0.91891 0.91352 0.92228 0.90606 0.93332 0.92536 0.97746 0.94227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 7.82 71.98 0.56 -4.27 16 2 C 0.17 6.62 3.04 44.98 0.14 6.76 16 3 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.15 5.30 1.99 45.07 0.09 5.39 16 5 H 0.07 2.88 7.58 -2.39 -0.02 2.87 16 6 N -0.68 -20.93 4.58 -444.89 -2.04 -22.97 16 7 C 0.62 20.52 7.80 86.83 0.68 21.20 16 8 O -0.54 -21.52 16.76 -3.84 -0.06 -21.58 16 9 C 0.12 3.45 8.14 137.15 1.12 4.57 16 10 N -0.27 -7.34 12.26 -52.37 -0.64 -7.98 16 11 N -0.06 -1.35 12.21 37.02 0.45 -0.89 16 12 N -0.11 -2.28 3.72 -152.26 -0.57 -2.84 16 13 C 0.16 1.70 1.30 3.60 0.00 1.71 16 14 C -0.15 -0.88 7.90 71.98 0.57 -0.31 16 15 C -0.16 -1.29 8.66 71.98 0.62 -0.67 16 16 C -0.16 -1.25 8.66 71.98 0.62 -0.63 16 17 N -0.26 -7.00 11.85 -52.32 -0.62 -7.62 16 18 C -0.11 -3.93 5.46 30.62 0.17 -3.77 16 19 C -0.13 -4.97 6.07 30.53 0.19 -4.79 16 20 C 0.17 8.35 5.26 86.22 0.45 8.81 16 21 N -0.60 -29.40 3.00 -676.05 -2.03 -31.42 16 22 C -0.25 -13.58 8.60 84.03 0.72 -12.86 16 23 H 0.07 3.79 6.21 -2.91 -0.02 3.77 16 24 C -0.05 -2.68 4.93 84.86 0.42 -2.26 16 25 N -0.93 -54.56 11.21 21.65 0.24 -54.32 16 26 Si 0.96 44.97 29.58 68.60 2.03 47.00 16 27 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 30 H 0.04 1.75 7.45 -2.39 -0.02 1.73 16 31 H 0.07 2.15 7.80 -2.39 -0.02 2.13 16 32 H 0.05 2.07 7.62 -2.39 -0.02 2.05 16 33 H 0.42 11.21 8.35 -92.71 -0.77 10.43 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.06 3.07 6.10 -2.38 -0.01 3.05 16 48 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -70.93 393.66 3.30 -67.63 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.18 Total: 16.12 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 6.35 Total: 18.89 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -5.20 Total: -128.05 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.06 Total: -21.58 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -70.93 3.30 -67.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993336572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.656 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds