Wall clock time and date at job start Tue Mar 31 2020 21:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 C 1.50699 * 109.47046 * 119.99651 * 2 1 3 5 5 N 1.31069 * 126.66266 * 300.17454 * 4 2 1 6 6 N 1.28842 * 107.99242 * 180.24131 * 5 4 2 7 7 N 1.28745 * 109.39490 * 359.75315 * 6 5 4 8 8 N 1.29014 * 108.80779 * 359.97438 * 7 6 5 9 9 C 1.46501 * 126.43751 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47166 * 90.02530 * 9 8 7 11 11 O 1.21277 * 120.00160 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00088 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00033 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.49549 * 325.06184 * 13 12 10 15 15 C 1.53040 * 109.49769 * 85.16386 * 13 12 10 16 16 C 1.53032 * 109.53880 * 181.31714 * 15 13 12 17 17 C 1.53195 * 109.31279 * 298.63445 * 16 15 13 18 18 N 1.46924 * 108.77678 * 54.63352 * 17 16 15 19 19 C 1.36935 * 120.63019 * 126.41533 * 18 17 16 20 20 H 1.08002 * 119.99991 * 209.03704 * 19 18 17 21 21 C 1.38811 * 120.00379 * 29.03539 * 19 18 17 22 22 N 1.31618 * 119.99531 * 15.05106 * 21 19 18 23 23 Si 1.86799 * 120.00490 * 195.05404 * 21 19 18 24 24 H 1.48499 * 109.47073 * 89.99514 * 23 21 19 25 25 H 1.48496 * 109.47450 * 210.00101 * 23 21 19 26 26 H 1.48505 * 109.46784 * 329.99829 * 23 21 19 27 27 C 1.46931 * 118.73837 * 306.39396 * 18 17 16 28 28 H 1.08995 * 109.58249 * 293.82017 * 27 18 17 29 29 C 1.52998 * 109.58563 * 173.39346 * 27 18 17 30 30 H 1.09004 * 109.47101 * 60.00682 * 1 2 3 31 31 H 1.09007 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47227 * 300.00006 * 1 2 3 33 33 H 1.09002 * 109.47227 * 239.99994 * 2 1 3 34 34 H 1.08991 * 109.47136 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46820 * 300.00128 * 3 2 1 36 36 H 1.09002 * 109.47065 * 59.99894 * 3 2 1 37 37 H 1.09000 * 109.47208 * 210.02965 * 9 8 7 38 38 H 1.09010 * 109.47134 * 330.02676 * 9 8 7 39 39 H 0.96995 * 119.99999 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.45520 * 301.33695 * 15 13 12 41 41 H 1.08999 * 109.46298 * 61.29295 * 15 13 12 42 42 H 1.09004 * 109.50266 * 178.68344 * 16 15 13 43 43 H 1.09003 * 109.50052 * 58.58474 * 16 15 13 44 44 H 1.09001 * 109.58472 * 294.84439 * 17 16 15 45 45 H 1.09005 * 109.70462 * 174.49377 * 17 16 15 46 46 H 0.97005 * 119.99621 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.47329 * 300.70996 * 29 27 18 48 48 H 1.09005 * 109.47157 * 60.71213 * 29 27 18 49 49 H 1.08997 * 109.46907 * 180.70978 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7949 -0.3801 2.4765 6 7 2.4014 -1.2267 3.2351 7 7 3.0153 -2.0915 2.5052 8 7 2.8088 -1.8093 1.2634 9 6 3.3279 -2.5428 0.1063 10 6 2.3493 -3.6196 -0.2861 11 8 1.3195 -3.7601 0.3388 12 7 2.6186 -4.4264 -1.3316 13 6 1.6670 -5.4729 -1.7134 14 1 1.1910 -5.8755 -0.8194 15 6 0.6009 -4.8810 -2.6382 16 6 -0.4122 -5.9656 -3.0113 17 6 0.3053 -7.0932 -3.7600 18 7 1.4244 -7.5705 -2.9363 19 6 1.5485 -8.8995 -2.6305 20 1 2.0286 -9.1994 -1.7107 21 6 1.0571 -9.8612 -3.5025 22 7 0.7453 -9.5315 -4.7379 23 14 0.8383 -11.6234 -2.9226 24 1 -0.5255 -11.7937 -2.3602 25 1 1.0196 -12.5483 -4.0701 26 1 1.8469 -11.9290 -1.8764 27 6 2.4082 -6.5948 -2.4474 28 1 2.9595 -6.1781 -3.2903 29 6 3.3789 -7.2830 -1.4857 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.4653 -1.8551 -0.7281 38 1 4.2846 -2.9976 0.3637 39 1 3.4424 -4.3143 -1.8311 40 1 0.0886 -4.0661 -2.1269 41 1 1.0754 -4.5007 -3.5428 42 1 -1.1842 -5.5379 -3.6511 43 1 -0.8693 -6.3638 -2.1054 44 1 0.6851 -6.7171 -4.7100 45 1 -0.3893 -7.9130 -3.9431 46 1 0.4016 -10.2035 -5.3472 47 1 2.8231 -7.7037 -0.6477 48 1 3.9052 -8.0809 -2.0098 49 1 4.1000 -6.5549 -1.1145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993961688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:25 Heat of formation + Delta-G solvation = 94.411322 kcal Electronic energy + Delta-G solvation = -30335.647541 eV Core-core repulsion = 26335.987724 eV Total energy + Delta-G solvation = -3999.659817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.33582 -40.16239 -37.95672 -36.46247 -35.54271 -34.59529 -32.76379 -31.91871 -31.61167 -30.05056 -28.65946 -27.58291 -26.30384 -25.13039 -24.63075 -23.70804 -22.32760 -21.06135 -20.87349 -20.55447 -19.60796 -18.04142 -17.93170 -16.60481 -16.37278 -16.11243 -15.67724 -15.52995 -14.95189 -14.88524 -14.19178 -13.98038 -13.83856 -13.66493 -13.61943 -13.45159 -13.14429 -12.82121 -12.68448 -12.57105 -12.31035 -12.01492 -11.86005 -11.71689 -11.66648 -11.54191 -11.48449 -11.25814 -11.13364 -11.00573 -10.86054 -10.69915 -10.45786 -10.32078 -10.21538 -10.11893 -10.07793 -9.78410 -9.52987 -8.96770 -8.55203 -6.79260 -5.88598 -3.33848 1.02713 1.61340 2.13874 2.24987 2.92992 3.32509 3.40114 3.40479 3.59682 3.86500 4.13210 4.25555 4.38626 4.43535 4.57850 4.70031 4.85858 5.15026 5.21961 5.24211 5.25391 5.35792 5.37183 5.43018 5.46380 5.51147 5.55974 5.61094 5.78797 5.80041 5.89064 5.89854 5.94078 6.05675 6.16517 6.24949 6.35311 6.39210 6.54066 6.61508 6.68099 6.84260 6.91593 7.28734 7.31489 7.57672 7.72932 7.94709 8.34732 8.48967 9.10401 9.72544 10.27612 11.19897 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021584 B = 0.002682 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.958667 B =10437.380623 C =11036.570938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.202 3.798 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.085 5.085 8 N -0.293 5.293 9 C 0.090 3.910 10 C 0.497 3.503 11 O -0.519 6.519 12 N -0.707 5.707 13 C 0.130 3.870 14 H 0.088 0.912 15 C -0.116 4.116 16 C -0.141 4.141 17 C 0.168 3.832 18 N -0.581 5.581 19 C -0.255 4.255 20 H 0.071 0.929 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.168 3.832 28 H 0.029 0.971 29 C -0.138 4.138 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.400 0.600 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.254 0.746 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 19.437 2.407 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.076 4.076 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.070 5.070 8 N -0.093 5.093 9 C -0.037 4.037 10 C 0.279 3.721 11 O -0.394 6.394 12 N -0.358 5.358 13 C 0.025 3.975 14 H 0.106 0.894 15 C -0.154 4.154 16 C -0.180 4.180 17 C 0.043 3.957 18 N -0.304 5.304 19 C -0.384 4.384 20 H 0.089 0.911 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.060 3.940 28 H 0.047 0.953 29 C -0.195 4.195 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.234 0.766 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.054 18.997 4.166 20.094 hybrid contribution 0.308 -1.051 -1.056 1.522 sum 5.362 17.945 3.110 18.986 Atomic orbital electron populations 1.21832 0.91672 1.03410 1.03353 1.19792 0.97957 0.95946 0.89543 1.21851 1.01142 0.93452 1.03713 1.26068 0.94727 0.88849 0.97973 1.74934 1.19721 1.21980 0.98350 1.78602 1.06827 0.99001 1.22417 1.78896 1.20247 1.20627 0.87217 1.47849 1.34645 1.19953 1.06860 1.22056 0.99524 0.95803 0.86277 1.20198 0.87335 0.83030 0.81527 1.90828 1.26142 1.70060 1.52415 1.46043 1.24386 1.34175 1.31181 1.21951 0.89707 0.86883 0.98955 0.89394 1.21753 0.96962 0.98257 0.98466 1.22190 0.97428 0.97423 1.01007 1.20869 0.89863 0.94353 0.90622 1.44042 1.23797 1.02792 1.59805 1.19177 1.36662 0.81142 1.01468 0.91108 1.25074 1.01594 0.97996 0.94651 1.70014 1.47548 1.33395 1.03628 0.86284 0.78273 0.84484 0.77686 1.21352 1.21710 1.20371 1.20555 0.90114 0.89447 0.93854 0.95320 1.21833 0.98168 1.00050 0.99480 0.90875 0.91769 0.91078 0.89136 0.92419 0.90751 0.90946 0.84461 0.83984 0.76605 0.93280 0.92562 0.92849 0.92508 0.96228 0.89134 0.93555 0.92594 0.91588 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.17 37.16 0.34 -0.86 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -0.83 9.18 37.16 0.34 -0.49 16 4 C 0.20 2.33 6.64 -155.43 -1.03 1.30 16 5 N -0.30 -4.35 12.36 32.70 0.40 -3.95 16 6 N -0.07 -1.20 13.43 60.35 0.81 -0.39 16 7 N -0.08 -1.25 13.29 60.35 0.80 -0.45 16 8 N -0.29 -3.42 2.83 -59.44 -0.17 -3.59 16 9 C 0.09 0.68 6.57 -5.20 -0.03 0.64 16 10 C 0.50 5.84 7.87 -10.99 -0.09 5.76 16 11 O -0.52 -8.85 16.09 5.56 0.09 -8.76 16 12 N -0.71 -7.83 4.57 -53.69 -0.25 -8.07 16 13 C 0.13 2.06 2.00 -67.81 -0.14 1.92 16 14 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 15 C -0.12 -1.82 5.46 -26.69 -0.15 -1.97 16 16 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 17 C 0.17 3.74 5.29 -3.71 -0.02 3.72 16 18 N -0.58 -13.30 2.99 -164.77 -0.49 -13.79 16 19 C -0.26 -6.51 8.61 -15.06 -0.13 -6.64 16 20 H 0.07 1.78 6.20 -52.49 -0.33 1.45 16 21 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 22 N -0.90 -24.87 11.14 55.49 0.62 -24.25 16 23 Si 0.90 21.00 29.58 -169.99 -5.03 15.97 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.17 3.04 3.03 -67.60 -0.21 2.83 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 C -0.14 -2.32 7.84 37.16 0.29 -2.03 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.51 6.84 -51.93 -0.36 0.15 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.14 0.42 7.12 -51.93 -0.37 0.05 16 38 H 0.14 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.40 3.02 8.60 -40.82 -0.35 2.67 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 46 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 47 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16 48 H 0.07 1.21 7.66 -51.93 -0.40 0.81 16 49 H 0.04 0.50 7.78 -51.93 -0.40 0.10 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -34.11 392.96 -6.58 -40.69 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.93 Total: -0.46 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.36 Total: 1.14 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 1.73 Total: -54.50 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.11 -6.58 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.101 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds