Wall clock time and date at job start Tue Mar 31 2020 21:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 C 1.50699 * 109.47046 * 119.99651 * 2 1 3 5 5 N 1.31069 * 126.66266 * 300.17454 * 4 2 1 6 6 N 1.28842 * 107.99242 * 180.24131 * 5 4 2 7 7 N 1.28745 * 109.39490 * 359.75315 * 6 5 4 8 8 N 1.29014 * 108.80779 * 359.97438 * 7 6 5 9 9 C 1.46501 * 126.43751 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47166 * 90.02530 * 9 8 7 11 11 O 1.21277 * 120.00160 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00088 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00033 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.49549 * 325.06184 * 13 12 10 15 15 C 1.53040 * 109.49769 * 85.16386 * 13 12 10 16 16 C 1.53032 * 109.53880 * 181.31714 * 15 13 12 17 17 C 1.53195 * 109.31279 * 298.63445 * 16 15 13 18 18 N 1.46924 * 108.77678 * 54.63352 * 17 16 15 19 19 C 1.36935 * 120.63019 * 126.41533 * 18 17 16 20 20 H 1.08002 * 119.99991 * 209.03704 * 19 18 17 21 21 C 1.38811 * 120.00379 * 29.03539 * 19 18 17 22 22 N 1.31618 * 119.99531 * 15.05106 * 21 19 18 23 23 Si 1.86799 * 120.00490 * 195.05404 * 21 19 18 24 24 H 1.48499 * 109.47073 * 89.99514 * 23 21 19 25 25 H 1.48496 * 109.47450 * 210.00101 * 23 21 19 26 26 H 1.48505 * 109.46784 * 329.99829 * 23 21 19 27 27 C 1.46931 * 118.73837 * 306.39396 * 18 17 16 28 28 H 1.08995 * 109.58249 * 293.82017 * 27 18 17 29 29 C 1.52998 * 109.58563 * 173.39346 * 27 18 17 30 30 H 1.09004 * 109.47101 * 60.00682 * 1 2 3 31 31 H 1.09007 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47227 * 300.00006 * 1 2 3 33 33 H 1.09002 * 109.47227 * 239.99994 * 2 1 3 34 34 H 1.08991 * 109.47136 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46820 * 300.00128 * 3 2 1 36 36 H 1.09002 * 109.47065 * 59.99894 * 3 2 1 37 37 H 1.09000 * 109.47208 * 210.02965 * 9 8 7 38 38 H 1.09010 * 109.47134 * 330.02676 * 9 8 7 39 39 H 0.96995 * 119.99999 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.45520 * 301.33695 * 15 13 12 41 41 H 1.08999 * 109.46298 * 61.29295 * 15 13 12 42 42 H 1.09004 * 109.50266 * 178.68344 * 16 15 13 43 43 H 1.09003 * 109.50052 * 58.58474 * 16 15 13 44 44 H 1.09001 * 109.58472 * 294.84439 * 17 16 15 45 45 H 1.09005 * 109.70462 * 174.49377 * 17 16 15 46 46 H 0.97005 * 119.99621 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.47329 * 300.70996 * 29 27 18 48 48 H 1.09005 * 109.47157 * 60.71213 * 29 27 18 49 49 H 1.08997 * 109.46907 * 180.70978 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7949 -0.3801 2.4765 6 7 2.4014 -1.2267 3.2351 7 7 3.0153 -2.0915 2.5052 8 7 2.8088 -1.8093 1.2634 9 6 3.3279 -2.5428 0.1063 10 6 2.3493 -3.6196 -0.2861 11 8 1.3195 -3.7601 0.3388 12 7 2.6186 -4.4264 -1.3316 13 6 1.6670 -5.4729 -1.7134 14 1 1.1910 -5.8755 -0.8194 15 6 0.6009 -4.8810 -2.6382 16 6 -0.4122 -5.9656 -3.0113 17 6 0.3053 -7.0932 -3.7600 18 7 1.4244 -7.5705 -2.9363 19 6 1.5485 -8.8995 -2.6305 20 1 2.0286 -9.1994 -1.7107 21 6 1.0571 -9.8612 -3.5025 22 7 0.7453 -9.5315 -4.7379 23 14 0.8383 -11.6234 -2.9226 24 1 -0.5255 -11.7937 -2.3602 25 1 1.0196 -12.5483 -4.0701 26 1 1.8469 -11.9290 -1.8764 27 6 2.4082 -6.5948 -2.4474 28 1 2.9595 -6.1781 -3.2903 29 6 3.3789 -7.2830 -1.4857 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.4653 -1.8551 -0.7281 38 1 4.2846 -2.9976 0.3637 39 1 3.4424 -4.3143 -1.8311 40 1 0.0886 -4.0661 -2.1269 41 1 1.0754 -4.5007 -3.5428 42 1 -1.1842 -5.5379 -3.6511 43 1 -0.8693 -6.3638 -2.1054 44 1 0.6851 -6.7171 -4.7100 45 1 -0.3893 -7.9130 -3.9431 46 1 0.4016 -10.2035 -5.3472 47 1 2.8231 -7.7037 -0.6477 48 1 3.9052 -8.0809 -2.0098 49 1 4.1000 -6.5549 -1.1145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993961688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:23 Heat of formation + Delta-G solvation = 70.259611 kcal Electronic energy + Delta-G solvation = -30336.694838 eV Core-core repulsion = 26335.987724 eV Total energy + Delta-G solvation = -4000.707114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.28116 -41.24960 -39.37389 -37.15672 -36.47059 -35.95976 -34.31932 -33.46566 -32.55645 -31.41164 -29.77705 -28.10354 -27.79367 -26.86228 -25.47310 -24.80227 -23.66732 -22.35498 -21.96616 -21.49828 -21.07152 -19.04934 -18.80705 -18.24403 -17.42418 -17.21761 -16.90661 -16.47443 -16.35078 -15.60343 -15.59601 -15.54258 -15.15691 -14.88087 -14.64093 -14.40275 -14.27713 -14.18611 -13.75977 -13.36464 -13.25873 -13.18435 -13.08757 -12.84876 -12.72005 -12.67503 -12.54037 -12.48851 -12.36685 -12.29167 -12.26859 -12.01422 -11.88519 -11.82901 -11.78693 -11.64063 -11.25960 -11.13323 -10.90326 -10.53562 -10.12206 -8.66076 -7.86987 -5.32377 0.10619 0.86024 1.14517 1.36493 1.44634 1.47946 1.54206 1.99860 2.51326 2.89277 3.17220 3.28885 3.39748 3.62757 3.68188 3.89487 3.92828 4.02646 4.02811 4.06848 4.20802 4.21208 4.36916 4.39074 4.51743 4.62313 4.66128 4.76055 4.78303 4.84232 4.87802 4.92036 4.92676 4.96382 5.03980 5.13216 5.15638 5.18849 5.27333 5.29283 5.37339 5.44172 5.47998 5.59624 5.69955 5.78097 6.39843 6.42491 7.09093 7.16522 7.49703 7.86997 8.36194 9.19406 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021584 B = 0.002682 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.958667 B =10437.380623 C =11036.570938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.139 4.139 4 C 0.209 3.791 5 N -0.331 5.331 6 N -0.109 5.109 7 N -0.104 5.104 8 N -0.291 5.291 9 C 0.088 3.912 10 C 0.500 3.500 11 O -0.576 6.576 12 N -0.690 5.690 13 C 0.148 3.852 14 H 0.050 0.950 15 C -0.106 4.106 16 C -0.132 4.132 17 C 0.175 3.825 18 N -0.602 5.602 19 C -0.252 4.252 20 H 0.070 0.930 21 C -0.046 4.046 22 N -0.931 5.931 23 Si 0.956 3.044 24 H -0.292 1.292 25 H -0.294 1.294 26 H -0.270 1.270 27 C 0.165 3.835 28 H 0.045 0.955 29 C -0.131 4.131 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.196 0.804 38 H 0.176 0.824 39 H 0.423 0.577 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.009 0.991 45 H 0.051 0.949 46 H 0.249 0.751 47 H 0.033 0.967 48 H 0.047 0.953 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.763 21.814 1.317 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.197 4.197 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.103 5.103 7 N -0.090 5.090 8 N -0.092 5.092 9 C -0.035 4.035 10 C 0.285 3.715 11 O -0.455 6.455 12 N -0.343 5.343 13 C 0.041 3.959 14 H 0.069 0.931 15 C -0.145 4.145 16 C -0.172 4.172 17 C 0.049 3.951 18 N -0.326 5.326 19 C -0.383 4.383 20 H 0.088 0.912 21 C -0.242 4.242 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.219 1.219 25 H -0.221 1.221 26 H -0.195 1.195 27 C 0.058 3.942 28 H 0.063 0.937 29 C -0.188 4.188 30 H 0.120 0.880 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.213 0.787 38 H 0.194 0.806 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.027 0.973 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.143 21.401 3.076 22.770 hybrid contribution -0.330 -1.755 -0.728 1.928 sum 6.813 19.646 2.348 20.926 Atomic orbital electron populations 1.21823 0.92429 1.01754 1.04096 1.20126 0.97226 0.97114 0.88782 1.21847 1.01728 0.91969 1.04130 1.26796 0.93377 0.88469 0.98262 1.74846 1.20587 1.22639 0.99864 1.78560 1.08049 0.99970 1.23696 1.78783 1.20758 1.20783 0.88706 1.48113 1.34313 1.19972 1.06775 1.22554 0.98683 0.95637 0.86669 1.20840 0.87120 0.83200 0.80359 1.90833 1.28924 1.71640 1.54121 1.45674 1.24385 1.32771 1.31431 1.21326 0.90150 0.87428 0.96976 0.93145 1.21661 0.96307 0.97229 0.99296 1.22030 0.98259 0.97004 0.99867 1.20648 0.89401 0.94181 0.90839 1.44277 1.25351 1.02948 1.59987 1.19419 1.35157 0.82689 1.01002 0.91236 1.25683 1.02532 1.01028 0.94927 1.70139 1.49194 1.33909 1.04460 0.85440 0.77870 0.81053 0.77145 1.21913 1.22093 1.19461 1.20753 0.89641 0.89227 0.94553 0.93735 1.21766 0.98321 1.00575 0.98166 0.88032 0.94503 0.92518 0.85863 0.91447 0.88193 0.92698 0.78746 0.80620 0.73865 0.92449 0.90455 0.90911 0.94510 0.97299 0.93010 0.94226 0.94780 0.93347 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.17 71.98 0.66 -1.42 16 2 C -0.01 -0.13 3.26 -11.54 -0.04 -0.17 16 3 C -0.14 -1.11 9.18 71.98 0.66 -0.45 16 4 C 0.21 4.40 6.64 138.13 0.92 5.32 16 5 N -0.33 -9.48 12.36 -50.45 -0.62 -10.10 16 6 N -0.11 -3.53 13.43 37.01 0.50 -3.04 16 7 N -0.10 -2.99 13.29 37.02 0.49 -2.50 16 8 N -0.29 -6.03 2.83 -341.97 -0.97 -7.00 16 9 C 0.09 0.90 6.57 85.63 0.56 1.46 16 10 C 0.50 10.04 7.87 87.66 0.69 10.73 16 11 O -0.58 -18.89 16.09 -3.02 -0.05 -18.94 16 12 N -0.69 -12.52 4.57 -442.16 -2.02 -14.54 16 13 C 0.15 4.38 2.00 45.07 0.09 4.47 16 14 H 0.05 1.92 7.58 -2.39 -0.02 1.91 16 15 C -0.11 -3.10 5.46 30.62 0.17 -2.94 16 16 C -0.13 -4.76 6.08 30.67 0.19 -4.58 16 17 C 0.17 7.89 5.29 86.36 0.46 8.34 16 18 N -0.60 -27.66 2.99 -675.22 -2.02 -29.67 16 19 C -0.25 -13.07 8.61 84.03 0.72 -12.34 16 20 H 0.07 3.55 6.20 -2.91 -0.02 3.53 16 21 C -0.05 -2.48 4.96 84.86 0.42 -2.06 16 22 N -0.93 -52.77 11.14 21.65 0.24 -52.53 16 23 Si 0.96 44.07 29.58 68.60 2.03 46.10 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.16 5.67 3.03 44.97 0.14 5.81 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 C -0.13 -4.18 7.84 71.98 0.56 -3.62 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 0.66 6.84 -2.39 -0.02 0.65 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.20 -0.25 7.12 -2.39 -0.02 -0.26 16 38 H 0.18 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.42 3.99 8.60 -92.71 -0.80 3.19 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 45 H 0.05 2.73 6.06 -2.38 -0.01 2.72 16 46 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 47 H 0.03 1.22 7.40 -2.39 -0.02 1.20 16 48 H 0.05 1.71 7.66 -2.38 -0.02 1.69 16 49 H 0.08 1.87 7.78 -2.39 -0.02 1.85 16 Total: -1.00 -81.42 392.96 3.94 -77.48 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.16 Total: 6.19 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.20 Total: 8.55 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -4.40 Total: -119.39 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.05 Total: -18.94 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -81.42 3.94 -77.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.741 kcal (2) G-P(sol) polarization free energy of solvation -81.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds