Wall clock time and date at job start Tue Mar 31 2020 21:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47145 * 2 1 4 4 C 1.50698 * 109.46881 * 119.99461 * 2 1 3 5 5 N 1.31075 * 126.66506 * 300.17734 * 4 2 1 6 6 N 1.28840 * 107.99151 * 180.24641 * 5 4 2 7 7 N 1.28733 * 109.39532 * 359.74760 * 6 5 4 8 8 N 1.29013 * 108.81289 * 0.02562 * 7 6 5 9 9 C 1.46508 * 126.43830 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47098 * 90.02618 * 9 8 7 11 11 O 1.21287 * 120.00255 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00062 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00265 * 179.72502 * 12 10 9 14 14 H 1.08995 * 109.49740 * 35.27055 * 13 12 10 15 15 C 1.53048 * 109.49442 * 275.20682 * 13 12 10 16 16 C 1.53041 * 109.53370 * 178.68094 * 15 13 12 17 17 C 1.53196 * 109.31100 * 61.37099 * 16 15 13 18 18 N 1.46931 * 108.77074 * 305.35702 * 17 16 15 19 19 C 1.36941 * 120.62781 * 233.61233 * 18 17 16 20 20 H 1.07997 * 119.99705 * 150.17059 * 19 18 17 21 21 C 1.38814 * 120.00111 * 330.16730 * 19 18 17 22 22 N 1.31624 * 120.00040 * 344.49085 * 21 19 18 23 23 Si 1.86800 * 119.99996 * 164.49526 * 21 19 18 24 24 H 1.48499 * 109.46784 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47363 * 119.99712 * 23 21 19 26 26 H 1.48501 * 109.46786 * 240.00097 * 23 21 19 27 27 C 1.46933 * 118.76592 * 53.59555 * 18 17 16 28 28 H 1.08998 * 109.56107 * 66.20704 * 27 18 17 29 29 C 1.52992 * 109.61533 * 186.63863 * 27 18 17 30 30 H 1.09004 * 109.47175 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47713 * 300.00377 * 1 2 3 32 32 H 1.09006 * 109.46818 * 60.00758 * 1 2 3 33 33 H 1.08998 * 109.47713 * 239.99623 * 2 1 3 34 34 H 1.09002 * 109.47217 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46493 * 299.99807 * 3 2 1 36 36 H 1.09005 * 109.46750 * 59.99212 * 3 2 1 37 37 H 1.08997 * 109.46959 * 330.02608 * 9 8 7 38 38 H 1.08994 * 109.46848 * 210.02478 * 9 8 7 39 39 H 0.97002 * 119.99762 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.45667 * 298.70464 * 15 13 12 41 41 H 1.08998 * 109.45821 * 58.67968 * 15 13 12 42 42 H 1.09001 * 109.49101 * 181.31752 * 16 15 13 43 43 H 1.08991 * 109.49844 * 301.41245 * 16 15 13 44 44 H 1.08994 * 109.58737 * 65.14684 * 17 16 15 45 45 H 1.09006 * 109.58225 * 185.57454 * 17 16 15 46 46 H 0.96991 * 119.99767 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47046 * 179.30480 * 29 27 18 48 48 H 1.09004 * 109.47197 * 299.30119 * 29 27 18 49 49 H 1.08994 * 109.47525 * 59.29868 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7948 -0.3801 2.4766 6 7 2.4014 -1.2266 3.2351 7 7 3.0153 -2.0914 2.5053 8 7 2.8096 -1.8086 1.2634 9 6 3.3290 -2.5421 0.1064 10 6 2.3502 -3.6182 -0.2869 11 8 1.3203 -3.7591 0.3379 12 7 2.6197 -4.4248 -1.3325 13 6 1.6709 -5.4750 -1.7112 14 1 0.6530 -5.1236 -1.5427 15 6 1.9269 -6.7240 -0.8646 16 6 0.9151 -7.8104 -1.2365 17 6 1.0905 -8.1823 -2.7122 18 7 0.9897 -6.9609 -3.5228 19 6 0.1062 -6.8872 -4.5665 20 1 -0.3234 -5.9360 -4.8441 21 6 -0.2371 -8.0350 -5.2677 22 7 0.4930 -9.1235 -5.1462 23 14 -1.7350 -8.0348 -6.3837 24 1 -2.3807 -6.6980 -6.3452 25 1 -1.3161 -8.3428 -7.7746 26 1 -2.6995 -9.0634 -5.9178 27 6 1.8543 -5.8197 -3.1925 28 1 2.8950 -6.0839 -3.3800 29 6 1.4651 -4.6150 -4.0514 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 4.2853 -2.9972 0.3642 38 1 3.4672 -1.8541 -0.7276 39 1 3.4435 -4.3124 -1.8320 40 1 2.9368 -7.0888 -1.0518 41 1 1.8205 -6.4751 0.1912 42 1 1.0831 -8.6913 -0.6169 43 1 -0.0958 -7.4374 -1.0729 44 1 2.0689 -8.6393 -2.8601 45 1 0.3093 -8.8826 -3.0079 46 1 0.2528 -9.9255 -5.6358 47 1 2.0996 -3.7663 -3.7958 48 1 1.5962 -4.8623 -5.1049 49 1 0.4223 -4.3579 -3.8657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993961782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:29 Heat of formation + Delta-G solvation = 93.885544 kcal Electronic energy + Delta-G solvation = -30368.811969 eV Core-core repulsion = 26369.129353 eV Total energy + Delta-G solvation = -3999.682617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.33346 -40.15980 -37.95291 -36.44283 -35.53817 -34.59211 -32.76014 -31.91918 -31.60696 -30.05528 -28.66439 -27.55492 -26.30777 -25.12768 -24.62036 -23.71158 -22.31785 -21.05970 -20.87482 -20.54346 -19.60286 -18.03861 -17.93956 -16.59526 -16.33929 -16.10359 -15.74263 -15.50025 -14.96404 -14.82672 -14.19109 -13.98963 -13.83840 -13.64687 -13.59658 -13.49366 -13.09592 -12.84529 -12.67200 -12.54444 -12.31914 -11.98828 -11.86234 -11.69094 -11.68159 -11.52178 -11.48190 -11.27099 -11.12355 -11.02996 -10.86258 -10.69962 -10.45808 -10.32400 -10.20825 -10.12673 -10.07323 -9.79546 -9.51419 -8.96425 -8.56517 -6.78674 -5.89691 -3.35244 1.02960 1.61636 2.14225 2.25042 2.93198 3.30235 3.39177 3.40210 3.61153 3.87245 4.14968 4.25604 4.38527 4.42482 4.60254 4.72120 4.87505 5.15119 5.23153 5.23744 5.27986 5.37149 5.37885 5.43365 5.49082 5.53558 5.56885 5.62727 5.80616 5.81934 5.89685 5.90415 5.96830 6.05219 6.15581 6.22313 6.35924 6.40622 6.54964 6.62889 6.69078 6.83018 6.89877 7.28516 7.31597 7.56076 7.72053 7.94735 8.34029 8.49191 9.09261 9.71661 10.27490 11.18977 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.002833 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.324558 B = 9882.778523 C =10723.822558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.203 3.797 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.086 5.086 8 N -0.293 5.293 9 C 0.090 3.910 10 C 0.497 3.503 11 O -0.520 6.520 12 N -0.707 5.707 13 C 0.131 3.869 14 H 0.088 0.912 15 C -0.118 4.118 16 C -0.140 4.140 17 C 0.170 3.830 18 N -0.581 5.581 19 C -0.256 4.256 20 H 0.071 0.929 21 C 0.007 3.993 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.168 3.832 28 H 0.029 0.971 29 C -0.137 4.137 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.400 0.600 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.020 0.980 45 H 0.088 0.912 46 H 0.254 0.746 47 H 0.037 0.963 48 H 0.065 0.935 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 16.269 5.500 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.075 4.075 5 N -0.150 5.150 6 N -0.069 5.069 7 N -0.071 5.071 8 N -0.093 5.093 9 C -0.036 4.036 10 C 0.279 3.721 11 O -0.395 6.395 12 N -0.358 5.358 13 C 0.026 3.974 14 H 0.106 0.894 15 C -0.156 4.156 16 C -0.180 4.180 17 C 0.044 3.956 18 N -0.304 5.304 19 C -0.385 4.385 20 H 0.089 0.911 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.060 3.940 28 H 0.047 0.953 29 C -0.194 4.194 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.234 0.766 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.246 15.815 7.281 18.858 hybrid contribution -0.194 -0.369 -1.745 1.794 sum 7.052 15.447 5.536 17.860 Atomic orbital electron populations 1.21833 0.91633 1.03452 1.03365 1.19803 0.97994 0.95947 0.89536 1.21854 1.01116 0.93455 1.03723 1.26083 0.94607 0.88829 0.97982 1.74939 1.19724 1.21970 0.98354 1.78593 1.06832 0.99001 1.22437 1.78879 1.20329 1.20675 0.87236 1.47849 1.34646 1.19990 1.06843 1.22055 0.99433 0.95857 0.86297 1.20203 0.87353 0.82880 0.81667 1.90831 1.26051 1.70569 1.52010 1.46049 1.24608 1.33952 1.31181 1.21945 0.92716 0.85508 0.97235 0.89399 1.21768 0.99789 0.95613 0.98464 1.22188 0.98419 0.96870 1.00543 1.20841 1.00495 0.89023 0.85213 1.44041 1.42531 1.10431 1.33432 1.19182 1.17195 0.94811 1.07352 0.91143 1.25097 0.98977 0.97258 0.97930 1.70030 1.37536 1.02602 1.44208 0.86243 0.82782 0.77712 0.80143 1.20180 1.21672 1.21490 1.20557 0.94327 0.89838 0.89280 0.95336 1.21821 1.00802 0.95723 1.01058 0.91739 0.91106 0.90823 0.89076 0.92433 0.90721 0.90966 0.84042 0.84415 0.76602 0.92552 0.93190 0.92840 0.92500 0.96153 0.89401 0.93592 0.94394 0.91591 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.17 37.16 0.34 -0.92 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -0.87 9.18 37.16 0.34 -0.53 16 4 C 0.20 2.37 6.64 -155.43 -1.03 1.34 16 5 N -0.30 -4.37 12.36 32.70 0.40 -3.97 16 6 N -0.07 -1.20 13.43 60.35 0.81 -0.39 16 7 N -0.09 -1.26 13.29 60.35 0.80 -0.46 16 8 N -0.29 -3.42 2.83 -59.44 -0.17 -3.59 16 9 C 0.09 0.68 6.57 -5.19 -0.03 0.64 16 10 C 0.50 5.84 7.86 -10.99 -0.09 5.76 16 11 O -0.52 -8.85 16.10 5.55 0.09 -8.76 16 12 N -0.71 -7.83 4.58 -53.69 -0.25 -8.08 16 13 C 0.13 2.07 1.99 -67.81 -0.14 1.93 16 14 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 15 C -0.12 -1.95 5.46 -26.69 -0.15 -2.09 16 16 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 17 C 0.17 3.80 5.28 -3.71 -0.02 3.78 16 18 N -0.58 -13.22 2.99 -164.77 -0.49 -13.71 16 19 C -0.26 -6.45 8.58 -15.06 -0.13 -6.58 16 20 H 0.07 1.74 6.23 -52.49 -0.33 1.41 16 21 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16 22 N -0.90 -24.77 11.23 55.49 0.62 -24.15 16 23 Si 0.90 20.72 29.58 -169.99 -5.03 15.69 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.17 2.99 3.03 -67.60 -0.21 2.79 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 C -0.14 -2.19 7.84 37.15 0.29 -1.90 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.54 6.84 -51.93 -0.36 0.18 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.14 0.44 7.12 -51.93 -0.37 0.07 16 39 H 0.40 3.03 8.60 -40.82 -0.35 2.68 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 2.24 6.15 -51.93 -0.32 1.92 16 46 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.04 0.45 7.79 -51.93 -0.40 0.05 16 48 H 0.07 1.16 7.67 -51.93 -0.40 0.76 16 49 H 0.05 0.96 7.40 -51.93 -0.38 0.58 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -33.96 393.12 -6.58 -40.53 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.93 Total: -0.18 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.36 Total: 1.14 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 1.73 Total: -54.35 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.96 -6.58 -40.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.417 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds