Wall clock time and date at job start Tue Mar 31 2020 21:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47145 * 2 1 4 4 C 1.50698 * 109.46881 * 119.99461 * 2 1 3 5 5 N 1.31075 * 126.66506 * 300.17734 * 4 2 1 6 6 N 1.28840 * 107.99151 * 180.24641 * 5 4 2 7 7 N 1.28733 * 109.39532 * 359.74760 * 6 5 4 8 8 N 1.29013 * 108.81289 * 0.02562 * 7 6 5 9 9 C 1.46508 * 126.43830 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47098 * 90.02618 * 9 8 7 11 11 O 1.21287 * 120.00255 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00062 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00265 * 179.72502 * 12 10 9 14 14 H 1.08995 * 109.49740 * 35.27055 * 13 12 10 15 15 C 1.53048 * 109.49442 * 275.20682 * 13 12 10 16 16 C 1.53041 * 109.53370 * 178.68094 * 15 13 12 17 17 C 1.53196 * 109.31100 * 61.37099 * 16 15 13 18 18 N 1.46931 * 108.77074 * 305.35702 * 17 16 15 19 19 C 1.36941 * 120.62781 * 233.61233 * 18 17 16 20 20 H 1.07997 * 119.99705 * 150.17059 * 19 18 17 21 21 C 1.38814 * 120.00111 * 330.16730 * 19 18 17 22 22 N 1.31624 * 120.00040 * 344.49085 * 21 19 18 23 23 Si 1.86800 * 119.99996 * 164.49526 * 21 19 18 24 24 H 1.48499 * 109.46784 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47363 * 119.99712 * 23 21 19 26 26 H 1.48501 * 109.46786 * 240.00097 * 23 21 19 27 27 C 1.46933 * 118.76592 * 53.59555 * 18 17 16 28 28 H 1.08998 * 109.56107 * 66.20704 * 27 18 17 29 29 C 1.52992 * 109.61533 * 186.63863 * 27 18 17 30 30 H 1.09004 * 109.47175 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47713 * 300.00377 * 1 2 3 32 32 H 1.09006 * 109.46818 * 60.00758 * 1 2 3 33 33 H 1.08998 * 109.47713 * 239.99623 * 2 1 3 34 34 H 1.09002 * 109.47217 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46493 * 299.99807 * 3 2 1 36 36 H 1.09005 * 109.46750 * 59.99212 * 3 2 1 37 37 H 1.08997 * 109.46959 * 330.02608 * 9 8 7 38 38 H 1.08994 * 109.46848 * 210.02478 * 9 8 7 39 39 H 0.97002 * 119.99762 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.45667 * 298.70464 * 15 13 12 41 41 H 1.08998 * 109.45821 * 58.67968 * 15 13 12 42 42 H 1.09001 * 109.49101 * 181.31752 * 16 15 13 43 43 H 1.08991 * 109.49844 * 301.41245 * 16 15 13 44 44 H 1.08994 * 109.58737 * 65.14684 * 17 16 15 45 45 H 1.09006 * 109.58225 * 185.57454 * 17 16 15 46 46 H 0.96991 * 119.99767 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47046 * 179.30480 * 29 27 18 48 48 H 1.09004 * 109.47197 * 299.30119 * 29 27 18 49 49 H 1.08994 * 109.47525 * 59.29868 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7948 -0.3801 2.4766 6 7 2.4014 -1.2266 3.2351 7 7 3.0153 -2.0914 2.5053 8 7 2.8096 -1.8086 1.2634 9 6 3.3290 -2.5421 0.1064 10 6 2.3502 -3.6182 -0.2869 11 8 1.3203 -3.7591 0.3379 12 7 2.6197 -4.4248 -1.3325 13 6 1.6709 -5.4750 -1.7112 14 1 0.6530 -5.1236 -1.5427 15 6 1.9269 -6.7240 -0.8646 16 6 0.9151 -7.8104 -1.2365 17 6 1.0905 -8.1823 -2.7122 18 7 0.9897 -6.9609 -3.5228 19 6 0.1062 -6.8872 -4.5665 20 1 -0.3234 -5.9360 -4.8441 21 6 -0.2371 -8.0350 -5.2677 22 7 0.4930 -9.1235 -5.1462 23 14 -1.7350 -8.0348 -6.3837 24 1 -2.3807 -6.6980 -6.3452 25 1 -1.3161 -8.3428 -7.7746 26 1 -2.6995 -9.0634 -5.9178 27 6 1.8543 -5.8197 -3.1925 28 1 2.8950 -6.0839 -3.3800 29 6 1.4651 -4.6150 -4.0514 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 4.2853 -2.9972 0.3642 38 1 3.4672 -1.8541 -0.7276 39 1 3.4435 -4.3124 -1.8320 40 1 2.9368 -7.0888 -1.0518 41 1 1.8205 -6.4751 0.1912 42 1 1.0831 -8.6913 -0.6169 43 1 -0.0958 -7.4374 -1.0729 44 1 2.0689 -8.6393 -2.8601 45 1 0.3093 -8.8826 -3.0079 46 1 0.2528 -9.9255 -5.6358 47 1 2.0996 -3.7663 -3.7958 48 1 1.5962 -4.8623 -5.1049 49 1 0.4223 -4.3579 -3.8657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993961782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:28 Heat of formation + Delta-G solvation = 69.961894 kcal Electronic energy + Delta-G solvation = -30369.849377 eV Core-core repulsion = 26369.129353 eV Total energy + Delta-G solvation = -4000.720024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.28223 -41.25096 -39.37378 -37.15840 -36.46984 -35.95458 -34.33239 -33.44865 -32.55708 -31.41852 -29.77444 -28.10766 -27.78896 -26.84459 -25.47456 -24.81274 -23.66636 -22.35736 -21.97428 -21.49613 -21.08190 -19.04964 -18.81512 -18.23099 -17.42121 -17.20240 -16.81668 -16.65758 -16.25028 -15.61861 -15.59999 -15.51466 -15.17085 -14.86888 -14.68746 -14.38736 -14.30317 -14.18983 -13.73952 -13.36582 -13.28841 -13.15895 -13.09192 -12.83534 -12.71590 -12.67811 -12.49021 -12.48811 -12.35092 -12.29636 -12.27078 -12.01423 -11.88774 -11.81564 -11.80274 -11.65171 -11.25463 -11.13592 -10.90165 -10.53844 -10.12738 -8.64978 -7.86068 -5.32028 0.10380 0.85837 1.14447 1.36312 1.45556 1.49747 1.57664 1.99758 2.52791 2.89013 3.17058 3.30503 3.39849 3.62578 3.68265 3.89112 3.92366 4.01532 4.02493 4.06568 4.18135 4.21257 4.35603 4.38967 4.51463 4.63130 4.65902 4.77619 4.77965 4.83566 4.85296 4.91767 4.96129 4.96349 5.01716 5.10792 5.15185 5.18379 5.26475 5.28375 5.37036 5.44176 5.52369 5.57913 5.71586 5.75264 6.40122 6.43018 7.08839 7.16857 7.49683 7.87250 8.37968 9.21063 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.002833 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.324558 B = 9882.778523 C =10723.822558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.138 4.138 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.109 5.109 7 N -0.103 5.103 8 N -0.291 5.291 9 C 0.088 3.912 10 C 0.500 3.500 11 O -0.576 6.576 12 N -0.690 5.690 13 C 0.150 3.850 14 H 0.057 0.943 15 C -0.111 4.111 16 C -0.131 4.131 17 C 0.177 3.823 18 N -0.601 5.601 19 C -0.251 4.251 20 H 0.075 0.925 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.957 3.043 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.297 1.297 27 C 0.164 3.836 28 H 0.040 0.960 29 C -0.129 4.129 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.177 0.823 38 H 0.195 0.805 39 H 0.423 0.577 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.006 0.994 45 H 0.050 0.950 46 H 0.248 0.752 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.843 18.804 4.399 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.196 4.196 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.089 5.089 8 N -0.092 5.092 9 C -0.035 4.035 10 C 0.285 3.715 11 O -0.455 6.455 12 N -0.343 5.343 13 C 0.043 3.957 14 H 0.076 0.924 15 C -0.149 4.149 16 C -0.171 4.171 17 C 0.052 3.948 18 N -0.325 5.325 19 C -0.381 4.381 20 H 0.092 0.908 21 C -0.243 4.243 22 N -0.579 5.579 23 Si 0.786 3.214 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.224 1.224 27 C 0.058 3.942 28 H 0.058 0.942 29 C -0.186 4.186 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.195 0.805 38 H 0.212 0.788 39 H 0.261 0.739 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.105 0.895 48 H 0.066 0.934 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.220 18.393 6.169 21.480 hybrid contribution -0.790 -1.132 -1.400 1.966 sum 8.430 17.261 4.769 19.792 Atomic orbital electron populations 1.21822 0.92532 1.01699 1.04082 1.20118 0.97149 0.97171 0.88837 1.21848 1.01755 0.91928 1.04116 1.26771 0.93371 0.88525 0.98235 1.74852 1.20572 1.22648 0.99835 1.78552 1.08046 0.99958 1.23681 1.78766 1.20749 1.20758 0.88658 1.48111 1.34286 1.19970 1.06795 1.22553 0.98650 0.95662 0.86663 1.20848 0.87095 0.83053 0.80527 1.90836 1.28793 1.72133 1.53746 1.45678 1.24547 1.32600 1.31445 1.21321 0.92427 0.86341 0.95605 0.92447 1.21690 0.99644 0.95180 0.98418 1.22026 0.98405 0.98423 0.98244 1.20593 0.98250 0.88701 0.87305 1.44282 1.43408 1.11723 1.33082 1.19470 1.17039 0.94698 1.06896 0.90777 1.25743 1.01356 0.97343 0.99884 1.70161 1.39095 1.02970 1.45673 0.85364 0.80026 0.77681 0.78345 1.19050 1.21907 1.22407 1.20763 0.93853 0.88822 0.90794 0.94197 1.21755 1.00861 0.96494 0.99509 0.94605 0.92425 0.88154 0.85922 0.91367 0.88279 0.92652 0.80531 0.78825 0.73867 0.91023 0.93274 0.91368 0.94109 0.97545 0.93143 0.94308 0.89453 0.93392 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.17 71.98 0.66 -1.58 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -1.19 9.18 71.99 0.66 -0.52 16 4 C 0.21 4.46 6.64 138.13 0.92 5.38 16 5 N -0.33 -9.49 12.36 -50.45 -0.62 -10.12 16 6 N -0.11 -3.50 13.43 37.01 0.50 -3.00 16 7 N -0.10 -2.93 13.29 37.02 0.49 -2.44 16 8 N -0.29 -6.02 2.83 -341.97 -0.97 -6.99 16 9 C 0.09 0.90 6.57 85.63 0.56 1.46 16 10 C 0.50 10.03 7.86 87.66 0.69 10.72 16 11 O -0.58 -18.86 16.10 -3.05 -0.05 -18.91 16 12 N -0.69 -12.53 4.58 -442.16 -2.02 -14.55 16 13 C 0.15 4.43 1.99 45.07 0.09 4.52 16 14 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 15 C -0.11 -3.49 5.46 30.62 0.17 -3.33 16 16 C -0.13 -4.93 6.08 30.67 0.19 -4.74 16 17 C 0.18 8.11 5.28 86.36 0.46 8.57 16 18 N -0.60 -27.37 2.99 -675.21 -2.02 -29.38 16 19 C -0.25 -12.70 8.58 84.03 0.72 -11.98 16 20 H 0.07 3.63 6.23 -2.91 -0.02 3.61 16 21 C -0.05 -2.54 4.94 84.86 0.42 -2.12 16 22 N -0.93 -52.86 11.23 21.65 0.24 -52.61 16 23 Si 0.96 43.27 29.58 68.60 2.03 45.30 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 27 C 0.16 5.53 3.03 44.97 0.14 5.67 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 C -0.13 -3.77 7.84 71.98 0.56 -3.21 16 30 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.12 0.77 6.84 -2.39 -0.02 0.75 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.18 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.19 -0.20 7.12 -2.39 -0.02 -0.22 16 39 H 0.42 4.00 8.60 -92.71 -0.80 3.21 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.05 2.68 6.15 -2.38 -0.01 2.66 16 46 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 47 H 0.09 1.66 7.79 -2.39 -0.02 1.64 16 48 H 0.05 1.58 7.67 -2.39 -0.02 1.56 16 49 H 0.04 1.27 7.40 -2.39 -0.02 1.25 16 Total: -1.00 -80.67 393.12 3.93 -76.74 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.16 Total: 7.31 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.19 Total: 8.65 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -4.40 Total: -119.09 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -80.67 3.93 -76.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.702 kcal (2) G-P(sol) polarization free energy of solvation -80.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds