Wall clock time and date at job start Tue Mar 31 2020 21:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47290 * 2 1 4 4 C 1.50705 * 109.47577 * 239.99829 * 2 1 3 5 5 N 1.31066 * 126.66029 * 60.02230 * 4 2 1 6 6 N 1.28834 * 107.99558 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.39479 * 0.02562 * 6 5 4 8 8 N 1.29021 * 108.80689 * 359.74491 * 7 6 5 9 9 C 1.46502 * 126.43622 * 180.24997 * 8 7 6 10 10 C 1.50702 * 109.46959 * 270.17654 * 9 8 7 11 11 O 1.21280 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00175 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00346 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.49790 * 325.00284 * 13 12 10 15 15 C 1.53042 * 109.49496 * 85.06593 * 13 12 10 16 16 C 1.53043 * 109.53939 * 58.58934 * 15 13 12 17 17 C 1.53190 * 109.31131 * 61.36427 * 16 15 13 18 18 N 1.46926 * 108.77626 * 305.36550 * 17 16 15 19 19 C 1.36940 * 120.63244 * 233.63456 * 18 17 16 20 20 H 1.08001 * 120.00625 * 150.18938 * 19 18 17 21 21 C 1.38811 * 119.99733 * 330.18900 * 19 18 17 22 22 N 1.31618 * 120.00315 * 344.47137 * 21 19 18 23 23 Si 1.86808 * 119.99853 * 164.46862 * 21 19 18 24 24 H 1.48498 * 109.47050 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46675 * 120.00255 * 23 21 19 26 26 H 1.48505 * 109.46825 * 239.99720 * 23 21 19 27 27 C 1.46996 * 118.75508 * 53.60672 * 18 17 16 28 28 H 1.09005 * 109.57769 * 66.17567 * 27 18 17 29 29 C 1.53002 * 109.62952 * 186.61745 * 27 18 17 30 30 H 1.09009 * 109.47265 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47590 * 300.00356 * 1 2 3 32 32 H 1.09003 * 109.47398 * 60.00556 * 1 2 3 33 33 H 1.09004 * 109.47539 * 119.99980 * 2 1 3 34 34 H 1.09005 * 109.46812 * 299.99641 * 3 2 1 35 35 H 1.08994 * 109.46936 * 59.99843 * 3 2 1 36 36 H 1.08996 * 109.47144 * 180.02562 * 3 2 1 37 37 H 1.08997 * 109.47844 * 30.17738 * 9 8 7 38 38 H 1.09000 * 109.47003 * 150.18349 * 9 8 7 39 39 H 0.97010 * 119.99744 * 0.02562 * 12 10 9 40 40 H 1.09007 * 109.45813 * 178.60873 * 15 13 12 41 41 H 1.08996 * 109.46377 * 298.56323 * 15 13 12 42 42 H 1.08998 * 109.49642 * 181.31077 * 16 15 13 43 43 H 1.08997 * 109.49425 * 301.41197 * 16 15 13 44 44 H 1.08997 * 109.59212 * 65.15390 * 17 16 15 45 45 H 1.09004 * 109.58708 * 185.43813 * 17 16 15 46 46 H 0.96997 * 120.00532 * 180.02562 * 22 21 19 47 47 H 1.09007 * 109.47227 * 179.27110 * 29 27 18 48 48 H 1.08997 * 109.47790 * 299.27424 * 29 27 18 49 49 H 1.09001 * 109.46891 * 59.27383 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7980 -0.3782 -2.4765 6 7 2.3996 -1.2283 -3.2349 7 7 3.0113 -2.0945 -2.5051 8 7 2.8131 -1.8063 -1.2632 9 6 3.3369 -2.5365 -0.1061 10 6 2.3596 -3.6117 0.2937 11 8 1.3275 -3.7545 -0.3270 12 7 2.6326 -4.4149 1.3411 13 6 1.6824 -5.4598 1.7302 14 1 0.6648 -5.1072 1.5618 15 6 1.9330 -6.7157 0.8923 16 6 3.3721 -7.1923 1.1021 17 6 3.5783 -7.5467 2.5781 18 7 3.2002 -6.3889 3.3998 19 6 4.0717 -5.8730 4.3215 20 1 4.0397 -4.8214 4.5657 21 6 4.9963 -6.7017 4.9422 22 7 4.8490 -8.0085 4.8886 23 14 6.4497 -5.9622 5.8534 24 1 6.3872 -4.4811 5.7658 25 1 6.4032 -6.3767 7.2786 26 1 7.7143 -6.4410 5.2396 27 6 1.8689 -5.7940 3.2134 28 1 1.1042 -6.5047 3.5269 29 6 1.7564 -4.5150 4.0456 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 3.1299 1.4425 -0.0005 37 1 4.2922 -2.9922 -0.3660 38 1 3.4779 -1.8462 0.7256 39 1 3.4580 -4.3005 1.8379 40 1 1.2420 -7.5009 1.1993 41 1 1.7764 -6.4863 -0.1617 42 1 3.5569 -8.0731 0.4872 43 1 4.0631 -6.3985 0.8186 44 1 2.9530 -8.4002 2.8398 45 1 4.6256 -7.7942 2.7517 46 1 5.4948 -8.5877 5.3226 47 1 0.7731 -4.0692 3.8955 48 1 1.8894 -4.7548 5.1005 49 1 2.5266 -3.8096 3.7335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993961784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:34 Heat of formation + Delta-G solvation = 94.259041 kcal Electronic energy + Delta-G solvation = -30893.489189 eV Core-core repulsion = 26893.822768 eV Total energy + Delta-G solvation = -3999.666421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.24688 -40.12127 -37.96890 -36.37636 -35.42159 -34.20111 -32.65344 -31.96952 -31.53217 -30.04438 -28.70358 -27.51716 -26.38479 -25.16369 -24.54213 -23.63135 -22.25204 -21.25155 -20.90927 -20.49711 -19.00521 -18.04263 -17.76698 -16.58586 -16.35174 -15.99205 -15.59036 -15.34690 -14.92647 -14.81767 -14.16938 -14.04731 -13.91141 -13.55341 -13.47824 -13.26050 -13.16045 -12.85624 -12.69725 -12.50836 -12.22779 -12.01952 -11.92056 -11.64876 -11.47367 -11.44877 -11.41052 -11.37128 -11.12479 -11.05323 -10.85119 -10.80726 -10.66775 -10.26199 -10.16437 -10.12425 -9.88333 -9.81291 -9.46133 -8.84831 -8.62885 -6.83007 -5.95571 -3.42363 1.12916 1.72412 2.21708 2.40212 3.14222 3.23440 3.30361 3.33725 3.69017 3.99132 4.26534 4.31315 4.49928 4.58133 4.65980 4.78342 4.95679 5.13110 5.18110 5.30415 5.32328 5.38925 5.42125 5.44085 5.52657 5.56839 5.57721 5.65244 5.78723 5.86907 5.92839 5.95810 6.00748 6.04305 6.13377 6.22674 6.37045 6.43712 6.52199 6.61768 6.75205 6.77981 6.86384 7.22866 7.52290 7.55595 7.63640 8.13596 8.27123 8.57502 9.02914 9.65736 10.23006 11.12313 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003296 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.460564 B = 8492.375981 C = 8996.316519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.202 3.798 5 N -0.303 5.303 6 N -0.078 5.078 7 N -0.085 5.085 8 N -0.289 5.289 9 C 0.089 3.911 10 C 0.496 3.504 11 O -0.533 6.533 12 N -0.688 5.688 13 C 0.136 3.864 14 H 0.078 0.922 15 C -0.122 4.122 16 C -0.140 4.140 17 C 0.171 3.829 18 N -0.586 5.586 19 C -0.262 4.262 20 H 0.071 0.929 21 C 0.009 3.991 22 N -0.897 5.897 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.159 3.841 28 H 0.042 0.958 29 C -0.135 4.135 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.412 0.588 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.019 0.981 45 H 0.086 0.914 46 H 0.254 0.746 47 H 0.039 0.961 48 H 0.065 0.935 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 13.126 -4.603 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.152 5.152 6 N -0.071 5.071 7 N -0.070 5.070 8 N -0.090 5.090 9 C -0.037 4.037 10 C 0.278 3.722 11 O -0.410 6.410 12 N -0.340 5.340 13 C 0.030 3.970 14 H 0.096 0.904 15 C -0.161 4.161 16 C -0.179 4.179 17 C 0.046 3.954 18 N -0.310 5.310 19 C -0.391 4.391 20 H 0.089 0.911 21 C -0.191 4.191 22 N -0.540 5.540 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.051 3.949 28 H 0.059 0.941 29 C -0.193 4.193 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.249 0.751 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.519 12.698 -6.375 14.910 hybrid contribution 1.312 -0.065 1.722 2.166 sum -3.207 12.633 -4.652 13.839 Atomic orbital electron populations 1.21815 0.91768 1.03288 1.03254 1.19788 0.97867 0.95957 0.89666 1.21850 1.01232 0.93470 1.03616 1.26042 0.94658 0.89032 0.97925 1.74913 1.19951 1.21936 0.98360 1.78580 1.07158 0.98890 1.22492 1.78891 1.20252 1.20575 0.87296 1.47858 1.34261 1.20005 1.06864 1.22068 0.99557 0.96000 0.86099 1.20171 0.87245 0.82990 0.81760 1.90782 1.26202 1.71173 1.52841 1.45905 1.24735 1.32926 1.30422 1.21645 0.91688 0.86410 0.97238 0.90415 1.21781 0.98501 0.96953 0.98845 1.22140 0.95248 0.99729 1.00778 1.20794 1.01492 0.88238 0.84898 1.44201 1.10121 1.34891 1.41787 1.19153 1.10938 0.92337 1.16685 0.91120 1.25125 1.00734 0.95257 0.97958 1.70024 1.35799 1.02138 1.46017 0.86294 0.82829 0.78556 0.79416 1.20243 1.21702 1.21576 1.20741 0.90051 0.94368 0.89722 0.94056 1.21780 0.99268 0.96970 1.01252 0.91827 0.90928 0.91165 0.89035 0.91011 0.90776 0.92383 0.83994 0.84446 0.75085 0.91666 0.93102 0.93286 0.92923 0.96319 0.89571 0.93545 0.94159 0.91613 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.17 37.15 0.34 -0.90 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 4 C 0.20 2.51 6.64 -155.44 -1.03 1.48 16 5 N -0.30 -4.57 12.36 32.70 0.40 -4.17 16 6 N -0.08 -1.30 13.43 60.35 0.81 -0.49 16 7 N -0.08 -1.34 13.29 60.35 0.80 -0.54 16 8 N -0.29 -3.73 2.83 -59.44 -0.17 -3.90 16 9 C 0.09 0.86 6.57 -5.19 -0.03 0.82 16 10 C 0.50 6.52 7.87 -10.98 -0.09 6.43 16 11 O -0.53 -9.16 16.09 5.56 0.09 -9.07 16 12 N -0.69 -9.17 3.47 -53.69 -0.19 -9.35 16 13 C 0.14 2.09 2.32 -67.82 -0.16 1.94 16 14 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 15 C -0.12 -1.98 5.58 -26.69 -0.15 -2.12 16 16 C -0.14 -2.41 5.93 -26.61 -0.16 -2.57 16 17 C 0.17 3.60 5.28 -3.71 -0.02 3.58 16 18 N -0.59 -12.14 2.64 -164.72 -0.44 -12.57 16 19 C -0.26 -5.96 8.58 -15.06 -0.13 -6.09 16 20 H 0.07 1.53 6.23 -52.49 -0.33 1.21 16 21 C 0.01 0.22 4.94 -17.43 -0.09 0.14 16 22 N -0.90 -23.69 11.23 55.49 0.62 -23.07 16 23 Si 0.90 19.40 29.58 -169.99 -5.03 14.37 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.16 2.75 3.20 -67.56 -0.22 2.54 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 C -0.14 -2.08 7.73 37.16 0.29 -1.79 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.63 6.85 -51.93 -0.36 0.28 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.14 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.14 0.78 7.13 -51.93 -0.37 0.41 16 39 H 0.41 5.35 7.77 -40.82 -0.32 5.03 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.89 7.53 -51.93 -0.39 0.50 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.06 6.15 -51.93 -0.32 1.74 16 46 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 47 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 48 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 49 H 0.05 0.76 6.37 -51.93 -0.33 0.43 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -30.92 389.93 -6.45 -37.36 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.83 Total: 3.14 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.40 Total: 2.41 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 1.85 Total: -54.09 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.92 -6.45 -37.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.621 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds