Wall clock time and date at job start Tue Mar 31 2020 21:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47290 * 2 1 4 4 C 1.50705 * 109.47577 * 239.99829 * 2 1 3 5 5 N 1.31066 * 126.66029 * 60.02230 * 4 2 1 6 6 N 1.28834 * 107.99558 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.39479 * 0.02562 * 6 5 4 8 8 N 1.29021 * 108.80689 * 359.74491 * 7 6 5 9 9 C 1.46502 * 126.43622 * 180.24997 * 8 7 6 10 10 C 1.50702 * 109.46959 * 270.17654 * 9 8 7 11 11 O 1.21280 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00175 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00346 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.49790 * 325.00284 * 13 12 10 15 15 C 1.53042 * 109.49496 * 85.06593 * 13 12 10 16 16 C 1.53043 * 109.53939 * 58.58934 * 15 13 12 17 17 C 1.53190 * 109.31131 * 61.36427 * 16 15 13 18 18 N 1.46926 * 108.77626 * 305.36550 * 17 16 15 19 19 C 1.36940 * 120.63244 * 233.63456 * 18 17 16 20 20 H 1.08001 * 120.00625 * 150.18938 * 19 18 17 21 21 C 1.38811 * 119.99733 * 330.18900 * 19 18 17 22 22 N 1.31618 * 120.00315 * 344.47137 * 21 19 18 23 23 Si 1.86808 * 119.99853 * 164.46862 * 21 19 18 24 24 H 1.48498 * 109.47050 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46675 * 120.00255 * 23 21 19 26 26 H 1.48505 * 109.46825 * 239.99720 * 23 21 19 27 27 C 1.46996 * 118.75508 * 53.60672 * 18 17 16 28 28 H 1.09005 * 109.57769 * 66.17567 * 27 18 17 29 29 C 1.53002 * 109.62952 * 186.61745 * 27 18 17 30 30 H 1.09009 * 109.47265 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47590 * 300.00356 * 1 2 3 32 32 H 1.09003 * 109.47398 * 60.00556 * 1 2 3 33 33 H 1.09004 * 109.47539 * 119.99980 * 2 1 3 34 34 H 1.09005 * 109.46812 * 299.99641 * 3 2 1 35 35 H 1.08994 * 109.46936 * 59.99843 * 3 2 1 36 36 H 1.08996 * 109.47144 * 180.02562 * 3 2 1 37 37 H 1.08997 * 109.47844 * 30.17738 * 9 8 7 38 38 H 1.09000 * 109.47003 * 150.18349 * 9 8 7 39 39 H 0.97010 * 119.99744 * 0.02562 * 12 10 9 40 40 H 1.09007 * 109.45813 * 178.60873 * 15 13 12 41 41 H 1.08996 * 109.46377 * 298.56323 * 15 13 12 42 42 H 1.08998 * 109.49642 * 181.31077 * 16 15 13 43 43 H 1.08997 * 109.49425 * 301.41197 * 16 15 13 44 44 H 1.08997 * 109.59212 * 65.15390 * 17 16 15 45 45 H 1.09004 * 109.58708 * 185.43813 * 17 16 15 46 46 H 0.96997 * 120.00532 * 180.02562 * 22 21 19 47 47 H 1.09007 * 109.47227 * 179.27110 * 29 27 18 48 48 H 1.08997 * 109.47790 * 299.27424 * 29 27 18 49 49 H 1.09001 * 109.46891 * 59.27383 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7980 -0.3782 -2.4765 6 7 2.3996 -1.2283 -3.2349 7 7 3.0113 -2.0945 -2.5051 8 7 2.8131 -1.8063 -1.2632 9 6 3.3369 -2.5365 -0.1061 10 6 2.3596 -3.6117 0.2937 11 8 1.3275 -3.7545 -0.3270 12 7 2.6326 -4.4149 1.3411 13 6 1.6824 -5.4598 1.7302 14 1 0.6648 -5.1072 1.5618 15 6 1.9330 -6.7157 0.8923 16 6 3.3721 -7.1923 1.1021 17 6 3.5783 -7.5467 2.5781 18 7 3.2002 -6.3889 3.3998 19 6 4.0717 -5.8730 4.3215 20 1 4.0397 -4.8214 4.5657 21 6 4.9963 -6.7017 4.9422 22 7 4.8490 -8.0085 4.8886 23 14 6.4497 -5.9622 5.8534 24 1 6.3872 -4.4811 5.7658 25 1 6.4032 -6.3767 7.2786 26 1 7.7143 -6.4410 5.2396 27 6 1.8689 -5.7940 3.2134 28 1 1.1042 -6.5047 3.5269 29 6 1.7564 -4.5150 4.0456 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 3.1299 1.4425 -0.0005 37 1 4.2922 -2.9922 -0.3660 38 1 3.4779 -1.8462 0.7256 39 1 3.4580 -4.3005 1.8379 40 1 1.2420 -7.5009 1.1993 41 1 1.7764 -6.4863 -0.1617 42 1 3.5569 -8.0731 0.4872 43 1 4.0631 -6.3985 0.8186 44 1 2.9530 -8.4002 2.8398 45 1 4.6256 -7.7942 2.7517 46 1 5.4948 -8.5877 5.3226 47 1 0.7731 -4.0692 3.8955 48 1 1.8894 -4.7548 5.1005 49 1 2.5266 -3.8096 3.7335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993961784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:32 Heat of formation + Delta-G solvation = 74.703068 kcal Electronic energy + Delta-G solvation = -30894.337199 eV Core-core repulsion = 26893.822768 eV Total energy + Delta-G solvation = -4000.514431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.27677 -41.30362 -39.33299 -37.13730 -36.42534 -35.64822 -34.09849 -33.43520 -32.53745 -31.46171 -29.79884 -28.09203 -27.79761 -26.80075 -25.45569 -24.74760 -23.67776 -22.46687 -22.13566 -21.47192 -20.37827 -19.09513 -18.75106 -18.17532 -17.46524 -17.00195 -16.87109 -16.54400 -16.18990 -15.72909 -15.57418 -15.26807 -15.17782 -14.84109 -14.52311 -14.39499 -14.24352 -14.17562 -13.72782 -13.55766 -13.20093 -13.07248 -12.93698 -12.88675 -12.71577 -12.67714 -12.45396 -12.39970 -12.28148 -12.28084 -12.26063 -12.16139 -11.87642 -11.86088 -11.67707 -11.38742 -11.18170 -11.02648 -10.90437 -10.47999 -10.04343 -8.59042 -7.78460 -5.25746 0.12388 0.84930 1.14887 1.39694 1.52892 1.57018 1.64468 2.12279 2.57385 2.90039 3.17515 3.39318 3.49587 3.60282 3.62701 3.91813 3.99678 4.04128 4.05543 4.07906 4.18936 4.21747 4.38920 4.40123 4.60091 4.66208 4.68831 4.75479 4.79921 4.86001 4.92131 4.95992 4.97229 5.00574 5.01706 5.12154 5.15916 5.23747 5.30538 5.36574 5.36878 5.49161 5.55453 5.59097 5.78248 5.82256 6.46794 6.48955 7.09225 7.22523 7.50409 7.92340 8.46208 9.28694 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003296 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.460564 B = 8492.375981 C = 8996.316519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.012 4.012 3 C -0.139 4.139 4 C 0.209 3.791 5 N -0.328 5.328 6 N -0.108 5.108 7 N -0.106 5.106 8 N -0.288 5.288 9 C 0.086 3.914 10 C 0.503 3.497 11 O -0.574 6.574 12 N -0.682 5.682 13 C 0.149 3.851 14 H 0.081 0.919 15 C -0.118 4.118 16 C -0.125 4.125 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.243 4.243 20 H 0.091 0.909 21 C -0.050 4.050 22 N -0.939 5.939 23 Si 0.956 3.044 24 H -0.253 1.253 25 H -0.306 1.306 26 H -0.301 1.301 27 C 0.156 3.844 28 H 0.026 0.974 29 C -0.128 4.128 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.166 0.834 38 H 0.188 0.812 39 H 0.417 0.583 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.060 0.940 44 H -0.011 1.011 45 H 0.055 0.945 46 H 0.244 0.756 47 H 0.065 0.935 48 H 0.045 0.955 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 16.030 -3.784 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 C -0.197 4.197 4 C -0.069 4.069 5 N -0.177 5.177 6 N -0.101 5.101 7 N -0.092 5.092 8 N -0.089 5.089 9 C -0.038 4.038 10 C 0.287 3.713 11 O -0.454 6.454 12 N -0.333 5.333 13 C 0.042 3.958 14 H 0.099 0.901 15 C -0.156 4.156 16 C -0.164 4.164 17 C 0.054 3.946 18 N -0.319 5.319 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.245 4.245 22 N -0.585 5.585 23 Si 0.786 3.214 24 H -0.177 1.177 25 H -0.234 1.234 26 H -0.228 1.228 27 C 0.050 3.950 28 H 0.044 0.956 29 C -0.185 4.185 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.183 0.817 38 H 0.205 0.795 39 H 0.255 0.745 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.007 0.993 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.321 15.646 -5.560 17.158 hybrid contribution 1.138 -0.983 1.487 2.115 sum -3.183 14.663 -4.073 15.548 Atomic orbital electron populations 1.21805 0.91976 1.01952 1.04124 1.20123 0.97592 0.96964 0.88696 1.21849 1.01561 0.92108 1.04199 1.26786 0.93258 0.88522 0.98313 1.74839 1.20721 1.22438 0.99688 1.78543 1.08206 0.99739 1.23637 1.78798 1.20845 1.20871 0.88662 1.48064 1.34076 1.20108 1.06664 1.22465 0.98770 0.96044 0.86531 1.20617 0.87035 0.83007 0.80655 1.90785 1.28278 1.72337 1.53999 1.45756 1.24420 1.32424 1.30737 1.21308 0.92441 0.86657 0.95347 0.90081 1.21729 0.97523 0.97450 0.98923 1.21944 0.96243 1.00326 0.97893 1.20538 0.98884 0.87808 0.87365 1.44389 1.11522 1.34538 1.41456 1.19595 1.09791 0.92994 1.14954 0.89187 1.25806 1.03435 0.95495 0.99795 1.70189 1.36652 1.03473 1.48219 0.85373 0.79765 0.79122 0.77139 1.17654 1.23427 1.22839 1.20862 0.87691 0.94919 0.91564 0.95636 1.21714 1.01391 0.96016 0.99411 0.94158 0.88060 0.92368 0.86309 0.92452 0.88197 0.91833 0.81692 0.79499 0.74450 0.91916 0.93150 0.92591 0.92122 0.99275 0.92688 0.94669 0.91613 0.93568 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.17 71.98 0.66 -1.43 16 2 C -0.01 -0.17 3.26 -11.54 -0.04 -0.20 16 3 C -0.14 -1.39 9.18 71.98 0.66 -0.73 16 4 C 0.21 4.77 6.64 138.14 0.92 5.68 16 5 N -0.33 -9.70 12.36 -50.45 -0.62 -10.32 16 6 N -0.11 -3.59 13.43 37.01 0.50 -3.10 16 7 N -0.11 -3.23 13.29 37.02 0.49 -2.74 16 8 N -0.29 -6.73 2.83 -341.98 -0.97 -7.70 16 9 C 0.09 1.30 6.57 85.63 0.56 1.86 16 10 C 0.50 11.53 7.87 87.66 0.69 12.22 16 11 O -0.57 -18.54 16.09 -3.03 -0.05 -18.59 16 12 N -0.68 -15.83 3.47 -442.18 -1.53 -17.37 16 13 C 0.15 4.25 2.32 45.07 0.10 4.36 16 14 H 0.08 2.35 7.58 -2.39 -0.02 2.33 16 15 C -0.12 -3.65 5.58 30.62 0.17 -3.48 16 16 C -0.12 -4.19 5.93 30.67 0.18 -4.01 16 17 C 0.18 7.64 5.28 86.36 0.46 8.10 16 18 N -0.60 -24.10 2.64 -675.06 -1.78 -25.88 16 19 C -0.24 -10.70 8.58 84.03 0.72 -9.98 16 20 H 0.09 3.59 6.23 -2.91 -0.02 3.57 16 21 C -0.05 -2.44 4.94 84.86 0.42 -2.02 16 22 N -0.94 -50.99 11.23 21.65 0.24 -50.75 16 23 Si 0.96 39.50 29.58 68.60 2.03 41.53 16 24 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 25 H -0.31 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.30 -12.87 7.11 99.48 0.71 -12.17 16 27 C 0.16 5.15 3.20 44.96 0.14 5.29 16 28 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 29 C -0.13 -3.51 7.73 71.98 0.56 -2.95 16 30 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.12 0.99 6.85 -2.39 -0.02 0.97 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.19 0.95 7.13 -2.39 -0.02 0.93 16 39 H 0.42 9.09 7.77 -92.70 -0.72 8.37 16 40 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 1.94 7.53 -2.39 -0.02 1.92 16 44 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.05 2.70 6.15 -2.38 -0.01 2.68 16 46 H 0.24 13.17 8.31 -92.71 -0.77 12.40 16 47 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.05 1.46 7.67 -2.39 -0.02 1.44 16 49 H 0.07 1.66 6.37 -2.39 -0.02 1.65 16 Total: -1.00 -70.69 389.93 4.75 -65.94 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.24 Total: 16.27 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 6.21 Total: 12.70 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -3.68 Total: -117.85 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -70.69 4.75 -65.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.646 kcal (2) G-P(sol) polarization free energy of solvation -70.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds