Wall clock time and date at job start Tue Mar 31 2020 21:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47367 * 2 1 4 4 C 1.50706 * 109.47139 * 239.99991 * 2 1 3 5 5 N 1.31063 * 126.65580 * 59.69105 * 4 2 1 6 6 N 1.28843 * 107.98843 * 179.89815 * 5 4 2 7 7 N 1.28734 * 109.39688 * 0.36825 * 6 5 4 8 8 N 1.29017 * 108.80811 * 359.77291 * 7 6 5 9 9 C 1.46500 * 126.43857 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47249 * 269.97416 * 9 8 7 11 11 O 1.21282 * 120.00129 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00230 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00210 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.49626 * 34.93779 * 13 12 10 15 15 C 1.53041 * 109.49944 * 274.84261 * 13 12 10 16 16 C 1.53042 * 109.53385 * 301.41043 * 15 13 12 17 17 C 1.53191 * 109.31689 * 298.63582 * 16 15 13 18 18 N 1.46930 * 108.77264 * 54.63269 * 17 16 15 19 19 C 1.36939 * 120.62626 * 126.41398 * 18 17 16 20 20 H 1.08004 * 119.99901 * 221.16818 * 19 18 17 21 21 C 1.38812 * 120.00026 * 41.17550 * 19 18 17 22 22 N 1.31617 * 120.00103 * 214.89128 * 21 19 18 23 23 Si 1.86800 * 120.00243 * 34.89504 * 21 19 18 24 24 H 1.48499 * 109.47106 * 84.62202 * 23 21 19 25 25 H 1.48497 * 109.47301 * 204.62981 * 23 21 19 26 26 H 1.48504 * 109.46749 * 324.62504 * 23 21 19 27 27 C 1.46917 * 118.74183 * 306.39433 * 18 17 16 28 28 H 1.08997 * 109.58916 * 293.82112 * 27 18 17 29 29 C 1.53004 * 109.70630 * 173.46388 * 27 18 17 30 30 H 1.08997 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46968 * 300.00044 * 1 2 3 32 32 H 1.09005 * 109.46950 * 59.99914 * 1 2 3 33 33 H 1.09005 * 109.46950 * 120.00085 * 2 1 3 34 34 H 1.09000 * 109.47112 * 60.00044 * 3 2 1 35 35 H 1.08999 * 109.46961 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47224 * 299.99945 * 3 2 1 37 37 H 1.08999 * 109.47285 * 29.97497 * 9 8 7 38 38 H 1.09004 * 109.47491 * 149.97922 * 9 8 7 39 39 H 0.97001 * 119.99554 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46213 * 61.43029 * 15 13 12 41 41 H 1.08993 * 109.46091 * 181.39664 * 15 13 12 42 42 H 1.08995 * 109.49721 * 178.68358 * 16 15 13 43 43 H 1.09007 * 109.49578 * 58.58808 * 16 15 13 44 44 H 1.08994 * 109.58540 * 294.85361 * 17 16 15 45 45 H 1.08998 * 109.70679 * 174.49216 * 17 16 15 46 46 H 0.97004 * 120.00042 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47259 * 300.64518 * 29 27 18 48 48 H 1.09001 * 109.46803 * 60.63873 * 29 27 18 49 49 H 1.08998 * 109.47026 * 180.63548 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7929 -0.3816 -2.4764 6 7 2.3977 -1.2294 -3.2350 7 7 3.0104 -2.0950 -2.5052 8 7 2.8092 -1.8090 -1.2633 9 6 3.3291 -2.5420 -0.1063 10 6 2.3474 -3.6138 0.2919 11 8 1.3153 -3.7522 -0.3298 12 7 2.6168 -4.4194 1.3384 13 6 1.6622 -5.4609 1.7259 14 1 1.1815 -5.8637 0.8343 15 6 0.6015 -4.8625 2.6527 16 6 1.2793 -4.2674 3.8891 17 6 2.0139 -5.3771 4.6478 18 7 2.9331 -6.0538 3.7227 19 6 4.2604 -6.1881 4.0318 20 1 5.0102 -6.0394 3.2688 21 6 4.6421 -6.5155 5.3256 22 7 5.7497 -6.0157 5.8313 23 14 3.5838 -7.6653 6.3490 24 1 3.9343 -9.0733 6.0330 25 1 3.8242 -7.4070 7.7914 26 1 2.1514 -7.4295 6.0360 27 6 2.4011 -6.5842 2.4601 28 1 1.7099 -7.4006 2.6690 29 6 3.5511 -7.0957 1.5901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 4.2829 -3.0012 -0.3657 38 1 3.4720 -1.8529 0.7261 39 1 3.4424 -4.3089 1.8354 40 1 0.0576 -4.0795 2.1244 41 1 -0.0940 -5.6433 2.9604 42 1 0.5256 -3.8207 4.5375 43 1 1.9931 -3.5036 3.5804 44 1 1.2911 -6.0951 5.0351 45 1 2.5789 -4.9455 5.4740 46 1 6.0162 -6.2442 6.7356 47 1 4.2438 -6.2791 1.3865 48 1 4.0755 -7.8947 2.1142 49 1 3.1533 -7.4778 0.6500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993961785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:38 Heat of formation + Delta-G solvation = 96.707146 kcal Electronic energy + Delta-G solvation = -30968.340550 eV Core-core repulsion = 26968.780287 eV Total energy + Delta-G solvation = -3999.560263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.24253 -40.18593 -38.11860 -36.36572 -35.42641 -34.23574 -32.83938 -31.99422 -31.55635 -30.56254 -28.86628 -27.50130 -26.53650 -25.04509 -24.53496 -23.64865 -22.45227 -21.42963 -20.89760 -20.48132 -19.16235 -18.07215 -17.77647 -16.69357 -16.39485 -16.00724 -15.55790 -15.35141 -15.19948 -14.82282 -14.30129 -14.09664 -13.97884 -13.62956 -13.53662 -13.37747 -13.24321 -12.85079 -12.66176 -12.49285 -12.36199 -12.21541 -11.96412 -11.89134 -11.63365 -11.53757 -11.45070 -11.37909 -11.36773 -11.04602 -10.93661 -10.82260 -10.68554 -10.45642 -10.15210 -10.11447 -9.87868 -9.83145 -9.64601 -8.92302 -8.51798 -6.91913 -6.26703 -3.59303 1.13216 1.72676 2.22127 2.37925 3.11630 3.28159 3.39613 3.44511 3.70103 4.00166 4.28506 4.41405 4.48131 4.58822 4.67637 4.73637 4.79799 4.97035 5.02986 5.23355 5.28622 5.31743 5.33813 5.37275 5.46040 5.53782 5.59119 5.59967 5.65669 5.83450 5.88598 5.93944 5.96529 5.97354 6.02425 6.15572 6.20161 6.24781 6.31229 6.41500 6.58068 6.66442 6.73261 6.83752 6.90439 7.52030 7.84309 8.10446 8.19805 8.57861 8.80036 9.52888 10.00590 10.88025 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.003203 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.562934 B = 8740.721407 C = 8999.933439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.202 3.798 5 N -0.303 5.303 6 N -0.078 5.078 7 N -0.085 5.085 8 N -0.290 5.290 9 C 0.089 3.911 10 C 0.498 3.502 11 O -0.533 6.533 12 N -0.689 5.689 13 C 0.136 3.864 14 H 0.080 0.920 15 C -0.122 4.122 16 C -0.133 4.133 17 C 0.142 3.858 18 N -0.595 5.595 19 C -0.285 4.285 20 H 0.078 0.922 21 C 0.056 3.944 22 N -0.876 5.876 23 Si 0.844 3.156 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.260 1.260 27 C 0.155 3.845 28 H 0.043 0.957 29 C -0.134 4.134 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.414 0.586 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.068 0.932 46 H 0.265 0.735 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 10.154 -5.866 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.076 4.076 5 N -0.152 5.152 6 N -0.071 5.071 7 N -0.071 5.071 8 N -0.090 5.090 9 C -0.037 4.037 10 C 0.280 3.720 11 O -0.410 6.410 12 N -0.341 5.341 13 C 0.030 3.970 14 H 0.098 0.902 15 C -0.161 4.161 16 C -0.173 4.173 17 C 0.017 3.983 18 N -0.320 5.320 19 C -0.412 4.412 20 H 0.095 0.905 21 C -0.148 4.148 22 N -0.514 5.514 23 Si 0.671 3.329 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.185 1.185 27 C 0.048 3.952 28 H 0.061 0.939 29 C -0.191 4.191 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.252 0.748 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.061 9.870 -7.595 14.317 hybrid contribution -0.021 -0.972 2.047 2.266 sum -7.083 8.898 -5.549 12.654 Atomic orbital electron populations 1.21813 0.91801 1.03232 1.03242 1.19791 0.97827 0.96003 0.89675 1.21849 1.01280 0.93435 1.03602 1.26044 0.94649 0.88968 0.97918 1.74918 1.19866 1.22012 0.98366 1.78579 1.07019 0.99033 1.22499 1.78879 1.20250 1.20643 0.87299 1.47855 1.34456 1.19837 1.06856 1.22063 0.99522 0.95976 0.86143 1.20178 0.87227 0.83039 0.81566 1.90781 1.26301 1.70550 1.53416 1.45897 1.24503 1.33317 1.30401 1.21585 0.89637 0.88423 0.97312 0.90157 1.21785 0.97306 1.00353 0.96641 1.21996 0.99072 0.99515 0.96677 1.21312 0.92347 0.92017 0.92649 1.44443 1.06373 1.63506 1.17641 1.18520 0.81148 1.45701 0.95880 0.90453 1.25570 0.94980 0.97110 0.97122 1.70050 1.25838 1.39959 1.15520 0.87396 0.82710 0.83888 0.78946 1.21497 1.22414 1.18521 1.20865 0.94677 0.91828 0.87814 0.93938 1.21747 0.98271 1.01702 0.97409 0.91887 0.90933 0.91179 0.89018 0.90764 0.92334 0.91033 0.83923 0.84344 0.74818 0.92694 0.91605 0.92960 0.92174 0.95740 0.91384 0.92546 0.92530 0.91434 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 2 C -0.01 -0.10 3.26 -91.77 -0.30 -0.40 16 3 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 4 C 0.20 2.53 6.64 -155.44 -1.03 1.50 16 5 N -0.30 -4.58 12.36 32.70 0.40 -4.17 16 6 N -0.08 -1.29 13.43 60.35 0.81 -0.48 16 7 N -0.09 -1.33 13.29 60.35 0.80 -0.53 16 8 N -0.29 -3.72 2.83 -59.44 -0.17 -3.89 16 9 C 0.09 0.86 6.57 -5.19 -0.03 0.82 16 10 C 0.50 6.39 7.87 -10.98 -0.09 6.31 16 11 O -0.53 -8.96 16.09 5.56 0.09 -8.87 16 12 N -0.69 -8.90 3.46 -53.69 -0.19 -9.08 16 13 C 0.14 1.98 2.32 -67.81 -0.16 1.82 16 14 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 15 C -0.12 -1.72 5.58 -26.69 -0.15 -1.87 16 16 C -0.13 -1.95 5.93 -26.61 -0.16 -2.11 16 17 C 0.14 2.60 4.60 -3.71 -0.02 2.58 16 18 N -0.59 -11.48 2.12 -164.78 -0.35 -11.83 16 19 C -0.29 -6.56 8.44 -15.06 -0.13 -6.68 16 20 H 0.08 1.88 6.82 -52.48 -0.36 1.53 16 21 C 0.06 1.41 4.82 -17.43 -0.08 1.32 16 22 N -0.88 -23.61 13.97 55.49 0.78 -22.84 16 23 Si 0.84 19.51 27.39 -169.99 -4.66 14.86 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.26 -5.77 5.25 56.52 0.30 -5.47 16 27 C 0.15 2.56 3.19 -67.60 -0.22 2.34 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 C -0.13 -2.13 7.85 37.16 0.29 -1.83 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.67 6.85 -51.93 -0.36 0.31 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.14 0.84 7.13 -51.93 -0.37 0.47 16 39 H 0.41 5.36 7.78 -40.82 -0.32 5.04 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.87 7.53 -51.92 -0.39 0.48 16 44 H 0.02 0.47 6.71 -51.93 -0.35 0.12 16 45 H 0.07 1.37 7.01 -51.93 -0.36 1.01 16 46 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.06 0.89 6.37 -51.93 -0.33 0.56 16 48 H 0.07 1.19 7.72 -51.93 -0.40 0.79 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -30.92 387.34 -5.97 -36.89 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.94 Total: 1.91 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.39 Total: 2.20 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 2.09 Total: -52.83 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.66 Total: 14.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.92 -5.97 -36.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.597 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds