Wall clock time and date at job start Tue Mar 31 2020 21:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47367 * 2 1 4 4 C 1.50706 * 109.47139 * 239.99991 * 2 1 3 5 5 N 1.31063 * 126.65580 * 59.69105 * 4 2 1 6 6 N 1.28843 * 107.98843 * 179.89815 * 5 4 2 7 7 N 1.28734 * 109.39688 * 0.36825 * 6 5 4 8 8 N 1.29017 * 108.80811 * 359.77291 * 7 6 5 9 9 C 1.46500 * 126.43857 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47249 * 269.97416 * 9 8 7 11 11 O 1.21282 * 120.00129 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00230 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00210 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.49626 * 34.93779 * 13 12 10 15 15 C 1.53041 * 109.49944 * 274.84261 * 13 12 10 16 16 C 1.53042 * 109.53385 * 301.41043 * 15 13 12 17 17 C 1.53191 * 109.31689 * 298.63582 * 16 15 13 18 18 N 1.46930 * 108.77264 * 54.63269 * 17 16 15 19 19 C 1.36939 * 120.62626 * 126.41398 * 18 17 16 20 20 H 1.08004 * 119.99901 * 221.16818 * 19 18 17 21 21 C 1.38812 * 120.00026 * 41.17550 * 19 18 17 22 22 N 1.31617 * 120.00103 * 214.89128 * 21 19 18 23 23 Si 1.86800 * 120.00243 * 34.89504 * 21 19 18 24 24 H 1.48499 * 109.47106 * 84.62202 * 23 21 19 25 25 H 1.48497 * 109.47301 * 204.62981 * 23 21 19 26 26 H 1.48504 * 109.46749 * 324.62504 * 23 21 19 27 27 C 1.46917 * 118.74183 * 306.39433 * 18 17 16 28 28 H 1.08997 * 109.58916 * 293.82112 * 27 18 17 29 29 C 1.53004 * 109.70630 * 173.46388 * 27 18 17 30 30 H 1.08997 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46968 * 300.00044 * 1 2 3 32 32 H 1.09005 * 109.46950 * 59.99914 * 1 2 3 33 33 H 1.09005 * 109.46950 * 120.00085 * 2 1 3 34 34 H 1.09000 * 109.47112 * 60.00044 * 3 2 1 35 35 H 1.08999 * 109.46961 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47224 * 299.99945 * 3 2 1 37 37 H 1.08999 * 109.47285 * 29.97497 * 9 8 7 38 38 H 1.09004 * 109.47491 * 149.97922 * 9 8 7 39 39 H 0.97001 * 119.99554 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46213 * 61.43029 * 15 13 12 41 41 H 1.08993 * 109.46091 * 181.39664 * 15 13 12 42 42 H 1.08995 * 109.49721 * 178.68358 * 16 15 13 43 43 H 1.09007 * 109.49578 * 58.58808 * 16 15 13 44 44 H 1.08994 * 109.58540 * 294.85361 * 17 16 15 45 45 H 1.08998 * 109.70679 * 174.49216 * 17 16 15 46 46 H 0.97004 * 120.00042 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47259 * 300.64518 * 29 27 18 48 48 H 1.09001 * 109.46803 * 60.63873 * 29 27 18 49 49 H 1.08998 * 109.47026 * 180.63548 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7929 -0.3816 -2.4764 6 7 2.3977 -1.2294 -3.2350 7 7 3.0104 -2.0950 -2.5052 8 7 2.8092 -1.8090 -1.2633 9 6 3.3291 -2.5420 -0.1063 10 6 2.3474 -3.6138 0.2919 11 8 1.3153 -3.7522 -0.3298 12 7 2.6168 -4.4194 1.3384 13 6 1.6622 -5.4609 1.7259 14 1 1.1815 -5.8637 0.8343 15 6 0.6015 -4.8625 2.6527 16 6 1.2793 -4.2674 3.8891 17 6 2.0139 -5.3771 4.6478 18 7 2.9331 -6.0538 3.7227 19 6 4.2604 -6.1881 4.0318 20 1 5.0102 -6.0394 3.2688 21 6 4.6421 -6.5155 5.3256 22 7 5.7497 -6.0157 5.8313 23 14 3.5838 -7.6653 6.3490 24 1 3.9343 -9.0733 6.0330 25 1 3.8242 -7.4070 7.7914 26 1 2.1514 -7.4295 6.0360 27 6 2.4011 -6.5842 2.4601 28 1 1.7099 -7.4006 2.6690 29 6 3.5511 -7.0957 1.5901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 4.2829 -3.0012 -0.3657 38 1 3.4720 -1.8529 0.7261 39 1 3.4424 -4.3089 1.8354 40 1 0.0576 -4.0795 2.1244 41 1 -0.0940 -5.6433 2.9604 42 1 0.5256 -3.8207 4.5375 43 1 1.9931 -3.5036 3.5804 44 1 1.2911 -6.0951 5.0351 45 1 2.5789 -4.9455 5.4740 46 1 6.0162 -6.2442 6.7356 47 1 4.2438 -6.2791 1.3865 48 1 4.0755 -7.8947 2.1142 49 1 3.1533 -7.4778 0.6500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993961785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:37 Heat of formation + Delta-G solvation = 76.997546 kcal Electronic energy + Delta-G solvation = -30969.195222 eV Core-core repulsion = 26968.780287 eV Total energy + Delta-G solvation = -4000.414935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -45.28246 -41.32810 -39.40970 -37.14747 -36.43469 -35.63151 -34.23665 -33.49154 -32.58915 -31.92014 -29.89786 -28.10514 -27.86927 -26.62783 -25.46399 -24.77001 -23.81660 -22.54352 -22.07126 -21.48284 -20.45367 -19.12043 -18.77350 -18.27290 -17.49059 -17.00938 -16.85505 -16.60156 -16.40061 -15.76824 -15.61063 -15.29678 -15.17477 -15.02415 -14.49613 -14.39107 -14.30146 -14.18887 -13.89319 -13.76796 -13.46670 -13.19507 -13.08336 -12.85344 -12.76152 -12.68657 -12.63931 -12.45348 -12.32162 -12.29523 -12.27044 -12.15932 -11.90194 -11.88448 -11.54774 -11.45727 -11.18589 -11.10543 -10.91747 -10.41808 -10.05036 -8.58444 -8.19444 -5.44829 0.11901 0.83638 1.14272 1.38751 1.40661 1.51849 1.56006 2.11762 2.52512 2.88986 3.03908 3.16547 3.39824 3.48762 3.61441 3.91280 3.95909 4.02883 4.03843 4.06784 4.16290 4.20785 4.34536 4.39077 4.54318 4.63914 4.65367 4.69606 4.78707 4.84625 4.90746 4.92430 4.93724 4.95936 4.98490 5.12099 5.14617 5.18423 5.28428 5.29705 5.32173 5.35349 5.44198 5.50221 5.61692 6.00192 6.33953 6.46882 7.05479 7.09433 7.49858 7.72002 8.22410 8.99262 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.003203 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.562934 B = 8740.721407 C = 8999.933439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 C -0.139 4.139 4 C 0.209 3.791 5 N -0.327 5.327 6 N -0.107 5.107 7 N -0.104 5.104 8 N -0.288 5.288 9 C 0.085 3.915 10 C 0.504 3.496 11 O -0.573 6.573 12 N -0.684 5.684 13 C 0.145 3.855 14 H 0.077 0.923 15 C -0.116 4.116 16 C -0.120 4.120 17 C 0.140 3.860 18 N -0.601 5.601 19 C -0.249 4.249 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.920 5.920 23 Si 0.884 3.116 24 H -0.302 1.302 25 H -0.309 1.309 26 H -0.244 1.244 27 C 0.154 3.846 28 H 0.043 0.957 29 C -0.129 4.129 30 H 0.040 0.960 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.417 0.583 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.020 0.980 45 H 0.046 0.954 46 H 0.260 0.740 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 11.369 -5.496 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.197 4.197 4 C -0.069 4.069 5 N -0.176 5.176 6 N -0.101 5.101 7 N -0.090 5.090 8 N -0.089 5.089 9 C -0.039 4.039 10 C 0.288 3.712 11 O -0.453 6.453 12 N -0.335 5.335 13 C 0.038 3.962 14 H 0.095 0.905 15 C -0.155 4.155 16 C -0.159 4.159 17 C 0.015 3.985 18 N -0.326 5.326 19 C -0.378 4.378 20 H 0.082 0.918 21 C -0.190 4.190 22 N -0.562 5.562 23 Si 0.713 3.287 24 H -0.231 1.231 25 H -0.237 1.237 26 H -0.168 1.168 27 C 0.048 3.952 28 H 0.061 0.939 29 C -0.187 4.187 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.184 0.816 38 H 0.200 0.800 39 H 0.255 0.745 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.159 11.079 -7.233 15.544 hybrid contribution 0.259 -1.370 1.878 2.339 sum -7.900 9.709 -5.354 13.614 Atomic orbital electron populations 1.21798 0.91878 1.01956 1.04121 1.20104 0.97660 0.96952 0.88674 1.21847 1.01530 0.92135 1.04223 1.26751 0.93342 0.88508 0.98283 1.74845 1.20629 1.22501 0.99628 1.78540 1.08051 0.99866 1.23597 1.78788 1.20776 1.20903 0.88578 1.48051 1.34233 1.19931 1.06677 1.22443 0.98966 0.96040 0.86434 1.20547 0.87007 0.83038 0.80564 1.90782 1.28242 1.71705 1.54530 1.45800 1.24215 1.32994 1.30527 1.21351 0.89688 0.88177 0.96945 0.90480 1.21733 0.97048 1.00576 0.96106 1.21851 0.99298 0.98117 0.96678 1.21303 0.91890 0.92934 0.92403 1.44536 1.05421 1.64087 1.18569 1.18511 0.82605 1.41971 0.94750 0.91814 1.25958 0.95694 0.98903 0.98473 1.70117 1.27886 1.42428 1.15791 0.86733 0.82617 0.81967 0.77421 1.23052 1.23712 1.16843 1.20964 0.94945 0.92696 0.86609 0.93904 1.21692 0.97980 1.01042 0.97956 0.94123 0.88165 0.92253 0.86641 0.88273 0.91922 0.92301 0.81635 0.80036 0.74536 0.92100 0.91201 0.90919 0.91588 0.96200 0.93493 0.93120 0.92386 0.93590 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.18 71.98 0.66 -1.50 16 2 C -0.01 -0.18 3.26 -11.54 -0.04 -0.22 16 3 C -0.14 -1.54 9.18 71.98 0.66 -0.88 16 4 C 0.21 4.88 6.64 138.14 0.92 5.80 16 5 N -0.33 -9.75 12.36 -50.45 -0.62 -10.37 16 6 N -0.11 -3.57 13.43 37.01 0.50 -3.07 16 7 N -0.10 -3.19 13.29 37.02 0.49 -2.70 16 8 N -0.29 -6.84 2.83 -341.98 -0.97 -7.81 16 9 C 0.09 1.36 6.57 85.63 0.56 1.92 16 10 C 0.50 11.52 7.87 87.66 0.69 12.21 16 11 O -0.57 -18.11 16.09 -3.04 -0.05 -18.16 16 12 N -0.68 -15.62 3.46 -442.15 -1.53 -17.16 16 13 C 0.14 3.80 2.32 45.07 0.10 3.91 16 14 H 0.08 2.16 7.58 -2.38 -0.02 2.14 16 15 C -0.12 -2.88 5.58 30.62 0.17 -2.71 16 16 C -0.12 -3.11 5.93 30.67 0.18 -2.93 16 17 C 0.14 4.79 4.60 86.36 0.40 5.18 16 18 N -0.60 -22.09 2.12 -675.24 -1.43 -23.53 16 19 C -0.25 -11.24 8.44 84.03 0.71 -10.54 16 20 H 0.06 3.06 6.82 -2.91 -0.02 3.04 16 21 C 0.01 0.46 4.82 84.86 0.41 0.87 16 22 N -0.92 -50.27 13.97 21.65 0.30 -49.97 16 23 Si 0.88 40.28 27.39 68.60 1.88 42.16 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 25 H -0.31 -14.64 7.11 99.48 0.71 -13.94 16 26 H -0.24 -10.32 5.25 99.48 0.52 -9.80 16 27 C 0.15 4.75 3.19 44.98 0.14 4.89 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 C -0.13 -3.88 7.85 71.98 0.57 -3.32 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.12 1.15 6.85 -2.38 -0.02 1.14 16 34 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.17 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.18 1.31 7.13 -2.39 -0.02 1.29 16 39 H 0.42 9.45 7.78 -92.71 -0.72 8.73 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 1.65 7.53 -2.38 -0.02 1.63 16 44 H 0.02 0.71 6.71 -2.39 -0.02 0.69 16 45 H 0.05 1.82 7.01 -2.39 -0.02 1.80 16 46 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 47 H 0.06 1.71 6.37 -2.39 -0.02 1.69 16 48 H 0.04 1.57 7.72 -2.39 -0.02 1.55 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -68.82 387.34 4.75 -64.07 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.05 Total: 13.84 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.13 Total: 12.70 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -3.27 Total: -114.61 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.88 Total: 42.16 kcal Total: -68.82 4.75 -64.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.065 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds