Wall clock time and date at job start Tue Mar 31 2020 19:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46969 * 2 1 4 4 C 1.52998 * 109.47604 * 239.99727 * 2 1 3 5 5 N 1.46505 * 109.46914 * 119.99577 * 2 1 3 6 6 N 1.28723 * 125.32068 * 0.02562 * 5 2 1 7 7 N 1.28976 * 108.98602 * 179.97438 * 6 5 2 8 8 C 1.34189 * 107.25833 * 0.02562 * 7 6 5 9 9 C 1.47999 * 126.70145 * 179.97438 * 8 7 6 10 10 O 1.21540 * 119.99932 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00015 * 0.02617 * 9 8 7 12 12 C 1.47026 * 125.65100 * 0.02562 * 11 9 8 13 13 C 1.54316 * 107.27365 * 180.79395 * 12 11 9 14 14 H 1.09002 * 110.72355 * 263.82891 * 13 12 11 15 15 N 1.46502 * 110.72235 * 140.55686 * 13 12 11 16 16 C 1.36930 * 120.00089 * 86.45199 * 15 13 12 17 17 H 1.08003 * 120.00345 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00051 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99647 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46840 * 90.00438 * 20 18 16 22 22 H 1.48493 * 109.47289 * 210.00231 * 20 18 16 23 23 H 1.48505 * 109.47140 * 330.00405 * 20 18 16 24 24 C 1.55160 * 102.94268 * 22.19228 * 13 12 11 25 25 C 1.52996 * 111.00660 * 82.57515 * 24 13 12 26 26 C 1.53004 * 111.00303 * 206.39072 * 24 13 12 27 27 C 1.47425 * 125.64767 * 179.71551 * 11 9 8 28 28 N 1.28869 * 125.31764 * 180.34334 * 5 2 1 29 29 H 1.08999 * 109.47454 * 300.00328 * 1 2 3 30 30 H 1.09008 * 109.47005 * 60.00702 * 1 2 3 31 31 H 1.09005 * 109.46910 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47185 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47190 * 299.99685 * 3 2 1 34 34 H 1.08999 * 109.47300 * 59.99577 * 3 2 1 35 35 H 1.08996 * 109.47097 * 300.00206 * 4 2 1 36 36 H 1.08999 * 109.46882 * 60.00116 * 4 2 1 37 37 H 1.08999 * 109.47006 * 180.02562 * 4 2 1 38 38 H 1.09004 * 109.87531 * 300.21113 * 12 11 9 39 39 H 1.09000 * 109.87938 * 61.37366 * 12 11 9 40 40 H 0.96997 * 119.99518 * 266.45032 * 15 13 12 41 41 H 0.97002 * 119.99594 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.47132 * 59.99715 * 25 24 13 43 43 H 1.08996 * 109.47319 * 179.97438 * 25 24 13 44 44 H 1.09006 * 109.46990 * 300.00137 * 25 24 13 45 45 H 1.08997 * 109.47466 * 59.99827 * 26 24 13 46 46 H 1.08999 * 109.47096 * 180.02562 * 26 24 13 47 47 H 1.09006 * 109.46602 * 299.99799 * 26 24 13 48 48 H 1.09001 * 110.36478 * 274.97629 * 27 11 9 49 49 H 1.08998 * 110.36859 * 37.30006 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1963 6 7 1.2761 -1.2168 2.1069 7 7 2.0306 -1.7400 3.0126 8 6 3.3028 -1.5260 2.6434 9 6 4.5188 -1.9473 3.3743 10 8 5.6181 -1.6871 2.9259 11 7 4.4071 -2.6196 4.5370 12 6 3.1455 -2.9988 5.1899 13 6 3.5089 -3.7312 6.4987 14 1 3.5017 -4.8111 6.3511 15 7 2.5953 -3.3481 7.5779 16 6 1.4095 -4.0133 7.7396 17 1 1.1478 -4.8208 7.0718 18 6 0.5440 -3.6507 8.7626 19 7 0.8632 -2.6670 9.5768 20 14 -1.0740 -4.5578 8.9828 21 1 -0.8744 -5.7113 9.8965 22 1 -2.0834 -3.6359 9.5627 23 1 -1.5504 -5.0474 7.6642 24 6 4.9467 -3.2267 6.7915 25 6 4.9187 -1.8672 7.4928 26 6 5.7295 -4.2501 7.6166 27 6 5.5298 -3.1021 5.3617 28 7 3.2579 -0.8610 1.5042 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2491 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7216 -1.2488 38 1 2.5615 -2.1062 5.4144 39 1 2.5764 -3.6627 4.5392 40 1 2.8305 -2.6232 8.1780 41 1 0.2582 -2.4134 10.2914 42 1 4.3806 -1.9562 8.4365 43 1 5.9393 -1.5373 7.6866 44 1 4.4162 -1.1398 6.8552 45 1 5.7938 -5.1884 7.0656 46 1 6.7335 -3.8712 7.8079 47 1 5.2188 -4.4197 8.5645 48 1 5.8719 -4.0738 5.0055 49 1 6.3481 -2.3822 5.3472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995849002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:38 Heat of formation + Delta-G solvation = 113.156462 kcal Electronic energy + Delta-G solvation = -30362.272970 eV Core-core repulsion = 26363.426003 eV Total energy + Delta-G solvation = -3998.846967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.39772 -40.00306 -38.10384 -37.71182 -34.20663 -33.53773 -33.18486 -32.28416 -30.76204 -28.10485 -28.02125 -27.57897 -27.02210 -26.92650 -24.57053 -24.38975 -23.76064 -21.47026 -20.82918 -19.71498 -18.70016 -17.43212 -17.37939 -17.17759 -16.61265 -15.93942 -15.59322 -14.73287 -14.64527 -14.46219 -14.13892 -13.99067 -13.83861 -13.62590 -13.31056 -13.08750 -12.96307 -12.80559 -12.65681 -12.49085 -12.30297 -12.20881 -12.12067 -12.02817 -11.93184 -11.56981 -11.49490 -11.22715 -11.00651 -10.97233 -10.93911 -10.85512 -10.56103 -10.43288 -10.35039 -10.19043 -10.15734 -9.80330 -9.59839 -8.92955 -8.36736 -7.01724 -5.78661 -3.08105 1.03098 1.58125 1.59973 2.84598 3.23474 3.44499 3.50528 3.51890 3.79183 4.04651 4.07130 4.17631 4.51776 4.59991 4.84280 4.96207 4.97345 4.99352 5.10438 5.14066 5.18070 5.20525 5.21655 5.28041 5.49619 5.54805 5.58849 5.61869 5.63609 5.77630 5.81207 5.82900 5.86569 5.99904 6.06882 6.07182 6.18128 6.30044 6.39791 6.41825 6.53964 6.63275 6.69906 6.78518 6.98780 7.61131 7.72028 8.04879 8.32447 8.39787 9.52061 10.05831 10.41024 11.43675 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.003618 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.671143 B = 7737.605794 C = 9765.788206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.177 3.823 3 C -0.160 4.160 4 C -0.159 4.159 5 N -0.130 5.130 6 N -0.058 5.058 7 N -0.238 5.238 8 C 0.131 3.869 9 C 0.625 3.375 10 O -0.527 6.527 11 N -0.588 5.588 12 C 0.077 3.923 13 C 0.180 3.820 14 H 0.067 0.933 15 N -0.710 5.710 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.087 4.087 25 C -0.133 4.133 26 C -0.128 4.128 27 C 0.121 3.879 28 N -0.251 5.251 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.390 0.610 41 H 0.256 0.744 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 5.240 -19.052 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.218 4.218 5 N -0.044 5.044 6 N -0.050 5.050 7 N -0.112 5.112 8 C -0.152 4.152 9 C 0.408 3.592 10 O -0.402 6.402 11 N -0.320 5.320 12 C -0.048 4.048 13 C 0.068 3.932 14 H 0.085 0.915 15 N -0.352 5.352 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.088 4.088 25 C -0.191 4.191 26 C -0.186 4.186 27 C -0.001 4.001 28 N -0.105 5.105 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.227 0.773 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.224 5.397 -19.450 20.622 hybrid contribution -0.623 -0.203 0.334 0.736 sum 3.601 5.194 -19.116 20.134 Atomic orbital electron populations 1.22108 0.89812 1.04832 1.04416 1.21466 0.96639 0.92800 0.79451 1.22255 1.03441 0.92001 1.04158 1.22248 1.03422 1.01142 0.94969 1.50745 1.01009 1.34530 1.18128 1.78972 1.21797 1.08839 0.95434 1.76437 0.99968 1.16576 1.18221 1.25219 0.94677 1.02081 0.93263 1.15686 0.84541 0.78899 0.80117 1.90805 1.25447 1.56633 1.67267 1.48207 1.10908 1.52984 1.19927 1.23538 0.83985 1.01337 0.95958 1.21251 0.87956 0.96627 0.87410 0.91547 1.42514 1.19011 1.41381 1.32260 1.19259 0.94819 1.12271 1.11056 0.90992 1.24720 0.98864 0.98679 0.98189 1.69654 1.37558 1.30677 1.20022 0.86207 0.83616 0.78742 0.77735 1.21748 1.21828 1.20627 1.22006 0.96889 0.97013 0.92902 1.21663 1.00948 0.95040 1.01412 1.21645 0.98935 0.97437 1.00582 1.22429 0.88939 0.99358 0.89397 1.74928 1.02753 1.17385 1.15389 0.90361 0.89211 0.90428 0.90286 0.89074 0.91221 0.91290 0.89071 0.90301 0.89846 0.91487 0.77316 0.93461 0.90760 0.93213 0.92769 0.92732 0.93041 0.91197 0.91001 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.90 37.16 0.29 -0.73 16 2 C 0.18 1.49 1.30 -131.82 -0.17 1.32 16 3 C -0.16 -1.10 8.65 37.16 0.32 -0.78 16 4 C -0.16 -1.05 8.67 37.16 0.32 -0.73 16 5 N -0.13 -1.74 3.72 0.52 0.00 -1.73 16 6 N -0.06 -0.91 12.21 60.35 0.74 -0.17 16 7 N -0.24 -4.28 10.09 32.10 0.32 -3.96 16 8 C 0.13 2.33 7.97 -156.24 -1.24 1.08 16 9 C 0.63 11.47 7.87 -12.26 -0.10 11.38 16 10 O -0.53 -10.50 17.36 5.33 0.09 -10.40 16 11 N -0.59 -10.16 3.31 -171.57 -0.57 -10.73 16 12 C 0.08 1.45 4.97 -3.07 -0.02 1.43 16 13 C 0.18 3.43 2.85 -66.10 -0.19 3.25 16 14 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 15 N -0.71 -16.80 5.08 -51.65 -0.26 -17.06 16 16 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 C -0.09 -1.37 0.87 -152.36 -0.13 -1.51 16 25 C -0.13 -2.19 7.93 37.16 0.29 -1.90 16 26 C -0.13 -1.79 8.68 37.16 0.32 -1.47 16 27 C 0.12 1.83 5.84 -2.53 -0.01 1.82 16 28 N -0.25 -3.97 11.85 32.11 0.38 -3.59 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.77 7.56 -51.93 -0.39 1.38 16 39 H 0.07 1.28 7.76 -51.93 -0.40 0.87 16 40 H 0.39 9.72 5.26 -40.82 -0.21 9.51 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.07 1.37 6.34 -51.93 -0.33 1.04 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.96 7.91 -51.93 -0.41 0.54 16 45 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 49 H 0.08 1.15 7.95 -51.93 -0.41 0.74 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -32.58 397.21 -6.20 -38.78 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.03 Total: 6.24 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.56 Total: 6.20 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 1.34 Total: -63.83 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.58 -6.20 -38.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995849002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.935 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds