Wall clock time and date at job start Tue Mar 31 2020 19:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46969 * 2 1 4 4 C 1.52998 * 109.47604 * 239.99727 * 2 1 3 5 5 N 1.46505 * 109.46914 * 119.99577 * 2 1 3 6 6 N 1.28723 * 125.32068 * 0.02562 * 5 2 1 7 7 N 1.28976 * 108.98602 * 179.97438 * 6 5 2 8 8 C 1.34189 * 107.25833 * 0.02562 * 7 6 5 9 9 C 1.47999 * 126.70145 * 179.97438 * 8 7 6 10 10 O 1.21540 * 119.99932 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00015 * 0.02617 * 9 8 7 12 12 C 1.47026 * 125.65100 * 0.02562 * 11 9 8 13 13 C 1.54316 * 107.27365 * 180.79395 * 12 11 9 14 14 H 1.09002 * 110.72355 * 263.82891 * 13 12 11 15 15 N 1.46502 * 110.72235 * 140.55686 * 13 12 11 16 16 C 1.36930 * 120.00089 * 86.45199 * 15 13 12 17 17 H 1.08003 * 120.00345 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00051 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99647 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46840 * 90.00438 * 20 18 16 22 22 H 1.48493 * 109.47289 * 210.00231 * 20 18 16 23 23 H 1.48505 * 109.47140 * 330.00405 * 20 18 16 24 24 C 1.55160 * 102.94268 * 22.19228 * 13 12 11 25 25 C 1.52996 * 111.00660 * 82.57515 * 24 13 12 26 26 C 1.53004 * 111.00303 * 206.39072 * 24 13 12 27 27 C 1.47425 * 125.64767 * 179.71551 * 11 9 8 28 28 N 1.28869 * 125.31764 * 180.34334 * 5 2 1 29 29 H 1.08999 * 109.47454 * 300.00328 * 1 2 3 30 30 H 1.09008 * 109.47005 * 60.00702 * 1 2 3 31 31 H 1.09005 * 109.46910 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47185 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47190 * 299.99685 * 3 2 1 34 34 H 1.08999 * 109.47300 * 59.99577 * 3 2 1 35 35 H 1.08996 * 109.47097 * 300.00206 * 4 2 1 36 36 H 1.08999 * 109.46882 * 60.00116 * 4 2 1 37 37 H 1.08999 * 109.47006 * 180.02562 * 4 2 1 38 38 H 1.09004 * 109.87531 * 300.21113 * 12 11 9 39 39 H 1.09000 * 109.87938 * 61.37366 * 12 11 9 40 40 H 0.96997 * 119.99518 * 266.45032 * 15 13 12 41 41 H 0.97002 * 119.99594 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.47132 * 59.99715 * 25 24 13 43 43 H 1.08996 * 109.47319 * 179.97438 * 25 24 13 44 44 H 1.09006 * 109.46990 * 300.00137 * 25 24 13 45 45 H 1.08997 * 109.47466 * 59.99827 * 26 24 13 46 46 H 1.08999 * 109.47096 * 180.02562 * 26 24 13 47 47 H 1.09006 * 109.46602 * 299.99799 * 26 24 13 48 48 H 1.09001 * 110.36478 * 274.97629 * 27 11 9 49 49 H 1.08998 * 110.36859 * 37.30006 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1963 6 7 1.2761 -1.2168 2.1069 7 7 2.0306 -1.7400 3.0126 8 6 3.3028 -1.5260 2.6434 9 6 4.5188 -1.9473 3.3743 10 8 5.6181 -1.6871 2.9259 11 7 4.4071 -2.6196 4.5370 12 6 3.1455 -2.9988 5.1899 13 6 3.5089 -3.7312 6.4987 14 1 3.5017 -4.8111 6.3511 15 7 2.5953 -3.3481 7.5779 16 6 1.4095 -4.0133 7.7396 17 1 1.1478 -4.8208 7.0718 18 6 0.5440 -3.6507 8.7626 19 7 0.8632 -2.6670 9.5768 20 14 -1.0740 -4.5578 8.9828 21 1 -0.8744 -5.7113 9.8965 22 1 -2.0834 -3.6359 9.5627 23 1 -1.5504 -5.0474 7.6642 24 6 4.9467 -3.2267 6.7915 25 6 4.9187 -1.8672 7.4928 26 6 5.7295 -4.2501 7.6166 27 6 5.5298 -3.1021 5.3617 28 7 3.2579 -0.8610 1.5042 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2491 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7216 -1.2488 38 1 2.5615 -2.1062 5.4144 39 1 2.5764 -3.6627 4.5392 40 1 2.8305 -2.6232 8.1780 41 1 0.2582 -2.4134 10.2914 42 1 4.3806 -1.9562 8.4365 43 1 5.9393 -1.5373 7.6866 44 1 4.4162 -1.1398 6.8552 45 1 5.7938 -5.1884 7.0656 46 1 6.7335 -3.8712 7.8079 47 1 5.2188 -4.4197 8.5645 48 1 5.8719 -4.0738 5.0055 49 1 6.3481 -2.3822 5.3472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995849002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:37 Heat of formation + Delta-G solvation = 91.460434 kcal Electronic energy + Delta-G solvation = -30363.213781 eV Core-core repulsion = 26363.426003 eV Total energy + Delta-G solvation = -3999.787777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.61204 -41.43371 -39.44831 -38.62463 -35.93598 -34.88926 -34.57291 -33.45793 -32.63229 -29.28646 -28.76826 -28.55651 -28.32086 -28.10264 -25.92220 -25.66834 -25.44420 -23.01353 -21.87636 -21.01133 -20.15980 -19.12839 -18.61537 -18.46327 -17.73144 -17.35213 -17.07708 -16.39613 -15.74337 -15.60904 -15.27874 -15.24592 -15.21192 -14.96046 -14.67330 -14.25321 -14.05761 -13.89034 -13.58060 -13.49756 -13.43053 -13.28740 -13.24416 -12.97273 -12.87720 -12.82120 -12.78312 -12.66748 -12.54182 -12.28985 -12.15040 -12.12004 -12.09912 -12.07599 -11.85539 -11.61660 -11.51527 -11.45588 -11.26374 -10.88764 -9.81195 -9.00876 -7.90618 -5.18815 -0.20432 0.25039 0.63484 1.50128 1.51720 1.55228 1.59945 1.82090 2.57497 2.67909 2.90344 3.38612 3.44415 3.46588 3.56405 3.62266 3.79603 3.82806 3.94852 4.17356 4.25866 4.32207 4.39450 4.42865 4.47222 4.50426 4.56194 4.58028 4.64588 4.69661 4.70253 4.81171 4.86332 4.97075 4.99157 5.03464 5.08693 5.09667 5.12288 5.16697 5.19242 5.24470 5.27211 5.46058 5.54753 5.58929 6.15088 6.31425 6.65340 7.04378 7.39626 8.11832 8.36535 9.32557 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.003618 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.671143 B = 7737.605794 C = 9765.788206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.157 3.843 3 C -0.157 4.157 4 C -0.155 4.155 5 N -0.108 5.108 6 N -0.066 5.066 7 N -0.267 5.267 8 C 0.111 3.889 9 C 0.626 3.374 10 O -0.545 6.545 11 N -0.585 5.585 12 C 0.097 3.903 13 C 0.173 3.827 14 H 0.072 0.928 15 N -0.719 5.719 16 C -0.238 4.238 17 H 0.077 0.923 18 C -0.068 4.068 19 N -0.967 5.967 20 Si 0.966 3.034 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.272 1.272 24 C -0.077 4.077 25 C -0.128 4.128 26 C -0.123 4.123 27 C 0.122 3.878 28 N -0.253 5.253 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.132 0.868 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.381 0.619 41 H 0.250 0.750 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.048 0.952 48 H 0.096 0.904 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 5.055 -21.358 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.079 3.921 3 C -0.215 4.215 4 C -0.213 4.213 5 N -0.025 5.025 6 N -0.058 5.058 7 N -0.140 5.140 8 C -0.172 4.172 9 C 0.409 3.591 10 O -0.421 6.421 11 N -0.316 5.316 12 C -0.029 4.029 13 C 0.062 3.938 14 H 0.090 0.910 15 N -0.360 5.360 16 C -0.370 4.370 17 H 0.095 0.905 18 C -0.261 4.261 19 N -0.617 5.617 20 Si 0.795 3.205 21 H -0.213 1.213 22 H -0.226 1.226 23 H -0.197 1.197 24 C -0.078 4.078 25 C -0.185 4.185 26 C -0.180 4.180 27 C 0.000 4.000 28 N -0.107 5.107 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.217 0.783 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.114 0.886 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.713 5.182 -21.786 22.885 hybrid contribution -0.766 -0.060 0.871 1.161 sum 3.947 5.123 -20.916 21.892 Atomic orbital electron populations 1.22182 0.88239 1.04672 1.05781 1.22267 0.97973 0.93560 0.78333 1.22310 1.02627 0.90928 1.05616 1.22299 1.02615 1.01059 0.95338 1.51407 1.00111 1.32703 1.18306 1.78884 1.21811 1.09312 0.95809 1.76390 1.00311 1.17861 1.19479 1.25174 0.94541 1.03355 0.94120 1.15755 0.84556 0.78614 0.80179 1.90782 1.26057 1.57465 1.67781 1.48185 1.10932 1.52709 1.19818 1.23089 0.84316 0.99777 0.95714 1.21444 0.89241 0.96883 0.86182 0.90989 1.42626 1.19062 1.41002 1.33328 1.19618 0.95529 1.11664 1.10171 0.90537 1.25435 1.02037 0.99947 0.98660 1.69801 1.38532 1.32553 1.20852 0.85255 0.79966 0.77453 0.77795 1.21331 1.22626 1.19705 1.21960 0.94890 0.97063 0.93918 1.21600 1.02027 0.95114 0.99767 1.21612 0.99597 0.97607 0.99215 1.22606 0.88338 1.00839 0.88174 1.74889 1.03949 1.17119 1.14783 0.91677 0.85113 0.91350 0.91560 0.84945 0.92406 0.92072 0.84992 0.91560 0.92680 0.91974 0.78299 0.94137 0.93150 0.90349 0.94697 0.91086 0.90370 0.93301 0.88603 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 7.90 71.98 0.57 -1.13 16 2 C 0.16 2.37 1.30 3.60 0.00 2.37 16 3 C -0.16 -1.83 8.65 71.98 0.62 -1.21 16 4 C -0.15 -1.68 8.67 71.98 0.62 -1.06 16 5 N -0.11 -2.87 3.72 -152.26 -0.57 -3.44 16 6 N -0.07 -2.11 12.21 37.02 0.45 -1.66 16 7 N -0.27 -9.90 10.09 -52.36 -0.53 -10.43 16 8 C 0.11 4.02 7.97 137.15 1.09 5.11 16 9 C 0.63 23.02 7.87 86.83 0.68 23.71 16 10 O -0.54 -21.46 17.36 -3.84 -0.07 -21.53 16 11 N -0.58 -20.04 3.31 -815.02 -2.70 -22.74 16 12 C 0.10 3.69 4.97 86.73 0.43 4.12 16 13 C 0.17 6.61 2.85 46.18 0.13 6.74 16 14 H 0.07 2.69 8.02 -2.39 -0.02 2.67 16 15 N -0.72 -34.75 5.08 -317.33 -1.61 -36.36 16 16 C -0.24 -12.84 9.98 84.04 0.84 -12.00 16 17 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 19 N -0.97 -58.26 13.06 21.65 0.28 -57.97 16 20 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.08 -2.35 0.87 -50.79 -0.04 -2.40 16 25 C -0.13 -4.17 7.93 71.98 0.57 -3.60 16 26 C -0.12 -3.16 8.68 71.98 0.62 -2.53 16 27 C 0.12 3.45 5.84 86.86 0.51 3.96 16 28 N -0.25 -8.03 11.85 -52.31 -0.62 -8.65 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 2.43 7.56 -2.38 -0.02 2.42 16 39 H 0.06 2.41 7.76 -2.39 -0.02 2.40 16 40 H 0.38 19.69 5.26 -92.71 -0.49 19.20 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.05 1.90 6.34 -2.39 -0.02 1.88 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.03 1.25 7.91 -2.38 -0.02 1.23 16 45 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.10 2.33 7.99 -2.39 -0.02 2.31 16 49 H 0.09 2.40 7.95 -2.39 -0.02 2.39 16 Total: -1.00 -73.02 397.21 4.25 -68.77 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.46 Total: 27.35 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 7.12 Total: 18.69 kcal Atomic # 7 Polarization: -135.97 SS G_CDS: -5.29 Total: -141.26 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.53 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.02 4.25 -68.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995849002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.230 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds