Wall clock time and date at job start Tue Mar 31 2020 19:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 C 1.53004 * 109.46974 * 240.00025 * 2 1 3 5 5 N 1.46494 * 109.47073 * 119.99997 * 2 1 3 6 6 N 1.28725 * 125.32270 * 240.03956 * 5 2 1 7 7 N 1.28986 * 108.98949 * 179.72306 * 6 5 2 8 8 C 1.34181 * 107.25247 * 0.37910 * 7 6 5 9 9 C 1.48000 * 126.70069 * 179.88965 * 8 7 6 10 10 O 1.21536 * 120.00633 * 179.68683 * 9 8 7 11 11 N 1.34786 * 119.99650 * 359.68827 * 9 8 7 12 12 C 1.48377 * 127.17223 * 359.79508 * 11 9 8 13 13 C 1.54941 * 103.37625 * 219.23552 * 12 11 9 14 14 H 1.09001 * 110.89458 * 81.13577 * 13 12 11 15 15 N 1.46500 * 110.74150 * 204.38905 * 13 12 11 16 16 C 1.36936 * 119.99987 * 268.41964 * 15 13 12 17 17 H 1.08004 * 119.99840 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00225 * 179.97438 * 16 15 13 19 19 N 1.31616 * 119.99743 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47242 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47066 * 119.99912 * 20 18 16 23 23 H 1.48500 * 109.47330 * 240.00296 * 20 18 16 24 24 C 1.54616 * 102.83624 * 322.72418 * 13 12 11 25 25 C 1.52999 * 110.32768 * 262.95516 * 24 13 12 26 26 C 1.53007 * 110.41407 * 140.78434 * 24 13 12 27 27 C 1.47485 * 127.03052 * 179.97438 * 11 9 8 28 28 N 1.28875 * 125.32041 * 59.99969 * 5 2 1 29 29 H 1.08999 * 109.46996 * 299.99744 * 1 2 3 30 30 H 1.09001 * 109.47069 * 60.00225 * 1 2 3 31 31 H 1.09002 * 109.46741 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46985 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46986 * 299.99826 * 3 2 1 34 34 H 1.08998 * 109.47167 * 59.99736 * 3 2 1 35 35 H 1.08994 * 109.47105 * 299.99626 * 4 2 1 36 36 H 1.08991 * 109.47051 * 60.00321 * 4 2 1 37 37 H 1.09005 * 109.46478 * 179.97438 * 4 2 1 38 38 H 1.09005 * 110.51886 * 100.79006 * 12 11 9 39 39 H 1.09006 * 110.83140 * 337.82723 * 12 11 9 40 40 H 0.96994 * 120.00094 * 88.41638 * 15 13 12 41 41 H 0.97003 * 119.99764 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.46892 * 177.07163 * 25 24 13 43 43 H 1.09000 * 109.47199 * 297.07499 * 25 24 13 44 44 H 1.09000 * 109.46597 * 57.07746 * 25 24 13 45 45 H 1.08999 * 109.46663 * 302.87496 * 26 24 13 46 46 H 1.09003 * 109.46588 * 62.87067 * 26 24 13 47 47 H 1.08997 * 109.47108 * 182.87293 * 26 24 13 48 48 H 1.09002 * 109.91598 * 35.15729 * 27 11 9 49 49 H 1.08999 * 109.91369 * 274.06810 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 2.7609 -0.1660 2.1074 7 7 2.9979 -1.0501 3.0161 8 6 2.3772 -2.1799 2.6437 9 6 2.3687 -3.4668 3.3747 10 8 1.7578 -4.4167 2.9259 11 7 3.0385 -3.5851 4.5384 12 6 3.8345 -2.5381 5.2251 13 6 5.0576 -3.3176 5.7703 14 1 5.8050 -3.4630 4.9903 15 7 5.6412 -2.6269 6.9230 16 6 6.6486 -1.7180 6.7385 17 1 7.0132 -1.5105 5.7432 18 6 7.2013 -1.0632 7.8306 19 7 6.7566 -1.3156 9.0434 20 14 8.5760 0.1762 7.5790 21 1 8.8911 0.2789 6.1314 22 1 8.1448 1.5035 8.0865 23 1 9.7845 -0.2679 8.3188 24 6 4.4409 -4.6697 6.1968 25 6 4.1407 -4.6673 7.6971 26 6 5.3855 -5.8213 5.8467 27 6 3.1338 -4.7853 5.3902 28 7 1.7710 -1.9181 1.5009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 3.2630 -2.0984 6.0426 39 1 4.1514 -1.7682 4.5215 40 1 5.3140 -2.8135 7.8168 41 1 7.1431 -0.8583 9.8066 42 1 3.6594 -5.6056 7.9728 43 1 5.0715 -4.5590 8.2537 44 1 3.4771 -3.8355 7.9334 45 1 5.5998 -5.8032 4.7781 46 1 6.3149 -5.7115 6.4056 47 1 4.9148 -6.7693 6.1069 48 1 3.1590 -5.6806 4.7689 49 1 2.2815 -4.8281 6.0682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995849021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:42 Heat of formation + Delta-G solvation = 117.873363 kcal Electronic energy + Delta-G solvation = -30287.432535 eV Core-core repulsion = 26288.790109 eV Total energy + Delta-G solvation = -3998.642427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.44210 -39.94772 -38.13758 -37.74606 -34.23600 -33.57863 -33.20840 -32.33192 -30.75922 -28.12802 -28.04254 -27.56091 -27.02206 -26.89389 -24.62789 -24.30678 -23.75664 -21.62932 -20.88792 -19.82347 -18.51149 -17.46039 -17.40211 -17.27263 -16.61785 -15.87714 -15.59261 -14.71536 -14.67170 -14.41571 -14.21870 -13.95786 -13.77261 -13.69227 -13.33903 -13.22171 -12.97360 -12.85772 -12.76709 -12.67869 -12.32570 -12.28253 -11.97328 -11.93932 -11.80059 -11.58271 -11.48729 -11.16567 -11.03125 -10.99761 -10.91352 -10.87029 -10.53365 -10.41593 -10.39216 -10.16068 -10.08286 -9.79238 -9.61770 -8.97979 -8.44964 -6.99593 -5.79179 -3.08209 0.99794 1.52662 1.56106 2.79442 3.21294 3.44010 3.50698 3.52281 3.76278 4.01120 4.04615 4.15150 4.48233 4.60096 4.88546 4.94271 4.96119 4.97312 5.12068 5.14578 5.15508 5.18480 5.19262 5.23408 5.46298 5.52718 5.55599 5.59608 5.67997 5.74532 5.81330 5.83440 5.87137 6.02738 6.03971 6.11557 6.22550 6.29771 6.34765 6.37887 6.54571 6.66089 6.71585 6.80952 6.97492 7.62010 7.72632 8.01756 8.29350 8.39566 9.51895 10.05724 10.41267 11.43237 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003545 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.941679 B = 7895.957538 C = 9947.125811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 C -0.154 4.154 4 C -0.160 4.160 5 N -0.129 5.129 6 N -0.057 5.057 7 N -0.242 5.242 8 C 0.135 3.865 9 C 0.629 3.371 10 O -0.527 6.527 11 N -0.594 5.594 12 C 0.064 3.936 13 C 0.180 3.820 14 H 0.066 0.934 15 N -0.711 5.711 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.089 4.089 25 C -0.135 4.135 26 C -0.131 4.131 27 C 0.122 3.878 28 N -0.251 5.251 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.391 0.609 41 H 0.255 0.745 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 0.142 -17.645 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.096 3.904 3 C -0.212 4.212 4 C -0.218 4.218 5 N -0.043 5.043 6 N -0.049 5.049 7 N -0.117 5.117 8 C -0.149 4.149 9 C 0.411 3.589 10 O -0.401 6.401 11 N -0.326 5.326 12 C -0.061 4.061 13 C 0.067 3.933 14 H 0.084 0.916 15 N -0.353 5.353 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.091 4.091 25 C -0.193 4.193 26 C -0.188 4.188 27 C -0.001 4.001 28 N -0.104 5.104 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.228 0.772 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.060 0.370 -18.129 21.777 hybrid contribution 0.490 0.390 0.338 0.712 sum -11.570 0.760 -17.792 21.236 Atomic orbital electron populations 1.22255 0.90720 1.04708 1.04136 1.21481 0.96279 0.93148 0.79467 1.22109 1.03399 0.91278 1.04389 1.22255 1.02604 1.02052 0.94931 1.50740 1.29982 1.05433 1.18166 1.78969 1.08234 1.22314 0.95419 1.76329 1.18810 0.98036 1.18485 1.25212 0.99513 0.97108 0.93088 1.15615 0.80093 0.83356 0.79809 1.90808 1.44108 1.37821 1.67388 1.48533 1.48462 1.15996 1.19626 1.24204 0.93242 0.91498 0.97180 1.21272 0.91999 0.88656 0.91383 0.91638 1.42576 1.41365 1.47636 1.03742 1.19325 1.09976 1.14743 0.93236 0.90990 1.24716 1.00104 1.00449 0.95260 1.69661 1.44844 1.45885 0.97549 0.86136 0.81754 0.81108 0.77315 1.20489 1.21849 1.21931 1.21771 0.93801 0.97598 0.95928 1.21756 1.02760 1.00774 0.93999 1.21796 0.99493 0.96408 1.01128 1.22271 0.97994 0.87411 0.92386 1.74942 1.21147 0.98977 1.15312 0.91261 0.89051 0.90279 0.90372 0.89182 0.90410 0.90268 0.89059 0.91222 0.90692 0.87916 0.77168 0.93508 0.93315 0.90512 0.92311 0.92990 0.91605 0.93075 0.90538 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 8.66 37.16 0.32 -0.70 16 2 C 0.18 1.42 1.30 -131.82 -0.17 1.25 16 3 C -0.15 -0.96 7.90 37.16 0.29 -0.67 16 4 C -0.16 -1.03 8.66 37.16 0.32 -0.71 16 5 N -0.13 -1.67 3.72 0.52 0.00 -1.67 16 6 N -0.06 -0.87 12.21 60.35 0.74 -0.13 16 7 N -0.24 -4.24 9.58 32.10 0.31 -3.93 16 8 C 0.13 2.33 7.99 -156.24 -1.25 1.08 16 9 C 0.63 11.43 7.91 -12.25 -0.10 11.33 16 10 O -0.53 -10.44 17.44 5.33 0.09 -10.35 16 11 N -0.59 -10.25 3.30 -170.58 -0.56 -10.81 16 12 C 0.06 1.19 6.39 -1.98 -0.01 1.18 16 13 C 0.18 3.49 3.16 -66.06 -0.21 3.28 16 14 H 0.07 1.33 7.81 -51.93 -0.41 0.93 16 15 N -0.71 -16.83 4.97 -51.61 -0.26 -17.09 16 16 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 19 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 20 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.09 -1.43 0.95 -153.12 -0.15 -1.58 16 25 C -0.14 -2.16 7.02 37.16 0.26 -1.89 16 26 C -0.13 -1.90 8.23 37.16 0.31 -1.60 16 27 C 0.12 1.88 6.28 -2.97 -0.02 1.86 16 28 N -0.25 -3.87 11.85 32.11 0.38 -3.49 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.10 2.02 5.50 -51.93 -0.29 1.74 16 40 H 0.39 9.61 5.13 -40.82 -0.21 9.40 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 44 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 1.13 7.59 -51.93 -0.39 0.74 16 49 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -32.41 395.68 -6.21 -38.62 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.93 Total: 6.39 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.64 Total: 5.87 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 1.33 Total: -63.55 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.41 -6.21 -38.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995849021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.498 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds