Wall clock time and date at job start Tue Mar 31 2020 19:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 C 1.53004 * 109.46974 * 240.00025 * 2 1 3 5 5 N 1.46494 * 109.47073 * 119.99997 * 2 1 3 6 6 N 1.28725 * 125.32270 * 240.03956 * 5 2 1 7 7 N 1.28986 * 108.98949 * 179.72306 * 6 5 2 8 8 C 1.34181 * 107.25247 * 0.37910 * 7 6 5 9 9 C 1.48000 * 126.70069 * 179.88965 * 8 7 6 10 10 O 1.21536 * 120.00633 * 179.68683 * 9 8 7 11 11 N 1.34786 * 119.99650 * 359.68827 * 9 8 7 12 12 C 1.48377 * 127.17223 * 359.79508 * 11 9 8 13 13 C 1.54941 * 103.37625 * 219.23552 * 12 11 9 14 14 H 1.09001 * 110.89458 * 81.13577 * 13 12 11 15 15 N 1.46500 * 110.74150 * 204.38905 * 13 12 11 16 16 C 1.36936 * 119.99987 * 268.41964 * 15 13 12 17 17 H 1.08004 * 119.99840 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00225 * 179.97438 * 16 15 13 19 19 N 1.31616 * 119.99743 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47242 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47066 * 119.99912 * 20 18 16 23 23 H 1.48500 * 109.47330 * 240.00296 * 20 18 16 24 24 C 1.54616 * 102.83624 * 322.72418 * 13 12 11 25 25 C 1.52999 * 110.32768 * 262.95516 * 24 13 12 26 26 C 1.53007 * 110.41407 * 140.78434 * 24 13 12 27 27 C 1.47485 * 127.03052 * 179.97438 * 11 9 8 28 28 N 1.28875 * 125.32041 * 59.99969 * 5 2 1 29 29 H 1.08999 * 109.46996 * 299.99744 * 1 2 3 30 30 H 1.09001 * 109.47069 * 60.00225 * 1 2 3 31 31 H 1.09002 * 109.46741 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46985 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46986 * 299.99826 * 3 2 1 34 34 H 1.08998 * 109.47167 * 59.99736 * 3 2 1 35 35 H 1.08994 * 109.47105 * 299.99626 * 4 2 1 36 36 H 1.08991 * 109.47051 * 60.00321 * 4 2 1 37 37 H 1.09005 * 109.46478 * 179.97438 * 4 2 1 38 38 H 1.09005 * 110.51886 * 100.79006 * 12 11 9 39 39 H 1.09006 * 110.83140 * 337.82723 * 12 11 9 40 40 H 0.96994 * 120.00094 * 88.41638 * 15 13 12 41 41 H 0.97003 * 119.99764 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.46892 * 177.07163 * 25 24 13 43 43 H 1.09000 * 109.47199 * 297.07499 * 25 24 13 44 44 H 1.09000 * 109.46597 * 57.07746 * 25 24 13 45 45 H 1.08999 * 109.46663 * 302.87496 * 26 24 13 46 46 H 1.09003 * 109.46588 * 62.87067 * 26 24 13 47 47 H 1.08997 * 109.47108 * 182.87293 * 26 24 13 48 48 H 1.09002 * 109.91598 * 35.15729 * 27 11 9 49 49 H 1.08999 * 109.91369 * 274.06810 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 2.7609 -0.1660 2.1074 7 7 2.9979 -1.0501 3.0161 8 6 2.3772 -2.1799 2.6437 9 6 2.3687 -3.4668 3.3747 10 8 1.7578 -4.4167 2.9259 11 7 3.0385 -3.5851 4.5384 12 6 3.8345 -2.5381 5.2251 13 6 5.0576 -3.3176 5.7703 14 1 5.8050 -3.4630 4.9903 15 7 5.6412 -2.6269 6.9230 16 6 6.6486 -1.7180 6.7385 17 1 7.0132 -1.5105 5.7432 18 6 7.2013 -1.0632 7.8306 19 7 6.7566 -1.3156 9.0434 20 14 8.5760 0.1762 7.5790 21 1 8.8911 0.2789 6.1314 22 1 8.1448 1.5035 8.0865 23 1 9.7845 -0.2679 8.3188 24 6 4.4409 -4.6697 6.1968 25 6 4.1407 -4.6673 7.6971 26 6 5.3855 -5.8213 5.8467 27 6 3.1338 -4.7853 5.3902 28 7 1.7710 -1.9181 1.5009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 3.2630 -2.0984 6.0426 39 1 4.1514 -1.7682 4.5215 40 1 5.3140 -2.8135 7.8168 41 1 7.1431 -0.8583 9.8066 42 1 3.6594 -5.6056 7.9728 43 1 5.0715 -4.5590 8.2537 44 1 3.4771 -3.8355 7.9334 45 1 5.5998 -5.8032 4.7781 46 1 6.3149 -5.7115 6.4056 47 1 4.9148 -6.7693 6.1069 48 1 3.1590 -5.6806 4.7689 49 1 2.2815 -4.8281 6.0682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995849021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:41 Heat of formation + Delta-G solvation = 96.702101 kcal Electronic energy + Delta-G solvation = -30288.350590 eV Core-core repulsion = 26288.790109 eV Total energy + Delta-G solvation = -3999.560482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.62108 -41.37811 -39.48293 -38.62540 -35.95302 -34.92359 -34.58224 -33.47978 -32.63740 -29.26588 -28.75142 -28.54765 -28.26022 -28.14188 -25.87966 -25.63644 -25.42816 -23.19684 -21.90950 -21.08230 -19.99804 -19.20986 -18.59660 -18.45665 -17.74056 -17.30441 -17.09287 -16.32772 -15.72493 -15.55292 -15.37459 -15.23983 -15.14421 -15.02574 -14.57046 -14.48987 -14.16398 -14.06272 -13.50007 -13.42220 -13.29865 -13.25790 -13.20579 -13.00072 -12.86850 -12.86311 -12.68516 -12.66190 -12.51278 -12.26247 -12.13923 -12.12336 -12.08074 -12.00085 -11.87277 -11.57193 -11.51506 -11.46891 -11.28431 -10.90120 -9.92688 -8.97214 -7.91410 -5.19178 -0.20414 0.22975 0.62292 1.48532 1.50665 1.51972 1.60189 1.81783 2.56061 2.66838 2.89638 3.39603 3.44635 3.47277 3.58438 3.64239 3.76895 3.87814 3.93055 4.13400 4.23877 4.34953 4.39939 4.46448 4.48715 4.51293 4.56099 4.58993 4.65075 4.70648 4.71174 4.78661 4.87161 4.89357 5.00294 5.04921 5.06463 5.09616 5.14431 5.17209 5.20311 5.24254 5.32398 5.44391 5.53078 5.59325 6.16836 6.31135 6.64133 7.03891 7.39593 8.11044 8.37799 9.31662 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003545 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.941679 B = 7895.957538 C = 9947.125811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 C -0.151 4.151 4 C -0.156 4.156 5 N -0.108 5.108 6 N -0.064 5.064 7 N -0.269 5.269 8 C 0.115 3.885 9 C 0.631 3.369 10 O -0.545 6.545 11 N -0.591 5.591 12 C 0.079 3.921 13 C 0.174 3.826 14 H 0.056 0.944 15 N -0.719 5.719 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.066 4.066 19 N -0.964 5.964 20 Si 0.964 3.036 21 H -0.270 1.270 22 H -0.295 1.295 23 H -0.293 1.293 24 C -0.080 4.080 25 C -0.129 4.129 26 C -0.126 4.126 27 C 0.122 3.878 28 N -0.252 5.252 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.385 0.615 41 H 0.251 0.749 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 0.207 -19.882 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.079 3.921 3 C -0.209 4.209 4 C -0.215 4.215 5 N -0.025 5.025 6 N -0.056 5.056 7 N -0.143 5.143 8 C -0.168 4.168 9 C 0.414 3.586 10 O -0.421 6.421 11 N -0.322 5.322 12 C -0.047 4.047 13 C 0.063 3.937 14 H 0.074 0.926 15 N -0.361 5.361 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.258 4.258 19 N -0.614 5.614 20 Si 0.794 3.206 21 H -0.195 1.195 22 H -0.222 1.222 23 H -0.221 1.221 24 C -0.082 4.082 25 C -0.186 4.186 26 C -0.184 4.184 27 C 0.001 3.999 28 N -0.107 5.107 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.222 0.778 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.060 0.426 -20.401 24.227 hybrid contribution 0.706 0.405 0.856 1.182 sum -12.354 0.831 -19.544 23.137 Atomic orbital electron populations 1.22308 0.89055 1.04352 1.05696 1.22272 0.97622 0.93962 0.78258 1.22184 1.02727 0.90102 1.05874 1.22309 1.02000 1.01675 0.95471 1.51397 1.28041 1.04656 1.18364 1.78886 1.08892 1.22020 0.95760 1.76279 1.19820 0.98437 1.19737 1.25106 1.00744 0.97029 0.93954 1.15688 0.79715 0.83496 0.79720 1.90786 1.44958 1.38536 1.67821 1.48489 1.48021 1.16137 1.19593 1.23813 0.92842 0.91413 0.96592 1.21384 0.91937 0.90448 0.89949 0.92623 1.42653 1.41124 1.47599 1.04691 1.19613 1.09963 1.14457 0.93055 0.91069 1.25399 1.02617 1.02641 0.95191 1.69791 1.46328 1.47242 0.98059 0.85206 0.79137 0.78728 0.77503 1.19471 1.22243 1.22062 1.21704 0.94255 0.96043 0.96199 1.21679 1.01473 1.02075 0.93390 1.21766 0.98585 0.96970 1.01061 1.22399 0.97954 0.87122 0.92459 1.74904 1.20956 1.00116 1.14681 0.92151 0.85019 0.91566 0.91481 0.85164 0.91422 0.91555 0.85021 0.92202 0.91681 0.88986 0.77807 0.94021 0.90008 0.93031 0.93423 0.92739 0.93109 0.90177 0.89177 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.66 71.98 0.62 -0.99 16 2 C 0.16 2.22 1.30 3.61 0.00 2.23 16 3 C -0.15 -1.55 7.90 71.98 0.57 -0.98 16 4 C -0.16 -1.65 8.66 71.98 0.62 -1.03 16 5 N -0.11 -2.73 3.72 -152.25 -0.57 -3.30 16 6 N -0.06 -1.95 12.21 37.02 0.45 -1.50 16 7 N -0.27 -9.60 9.58 -52.37 -0.50 -10.10 16 8 C 0.11 4.02 7.99 137.15 1.10 5.12 16 9 C 0.63 22.86 7.91 86.83 0.69 23.55 16 10 O -0.55 -21.31 17.44 -3.83 -0.07 -21.37 16 11 N -0.59 -20.22 3.30 -811.87 -2.68 -22.90 16 12 C 0.08 2.99 6.39 86.68 0.55 3.55 16 13 C 0.17 6.84 3.16 46.21 0.15 6.99 16 14 H 0.06 2.30 7.81 -2.39 -0.02 2.28 16 15 N -0.72 -34.75 4.97 -317.20 -1.58 -36.33 16 16 C -0.24 -12.99 9.96 84.03 0.84 -12.15 16 17 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 19 N -0.96 -57.38 13.06 21.65 0.28 -57.10 16 20 Si 0.96 45.96 29.55 68.60 2.03 47.99 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 C -0.08 -2.51 0.95 -51.28 -0.05 -2.56 16 25 C -0.13 -4.00 7.02 71.98 0.51 -3.49 16 26 C -0.13 -3.48 8.23 71.98 0.59 -2.88 16 27 C 0.12 3.57 6.28 86.54 0.54 4.12 16 28 N -0.25 -7.75 11.85 -52.32 -0.62 -8.37 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 39 H 0.09 3.73 5.50 -2.38 -0.01 3.72 16 40 H 0.39 19.47 5.13 -92.71 -0.48 18.99 16 41 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 1.88 7.00 -2.39 -0.02 1.86 16 44 H 0.05 1.57 7.95 -2.39 -0.02 1.55 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.09 2.45 7.59 -2.39 -0.02 2.43 16 49 H 0.09 2.27 7.68 -2.39 -0.02 2.25 16 Total: -1.00 -71.75 395.68 4.42 -67.33 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.48 Total: 27.44 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 7.20 Total: 18.21 kcal Atomic # 7 Polarization: -134.38 SS G_CDS: -5.21 Total: -139.59 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -71.75 4.42 -67.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995849021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.031 kcal (2) G-P(sol) polarization free energy of solvation -71.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds