Wall clock time and date at job start Tue Mar 31 2020 19:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47236 * 2 1 4 4 C 1.50703 * 109.47294 * 120.00042 * 2 1 3 5 5 N 1.31077 * 126.65806 * 300.04613 * 4 2 1 6 6 N 1.28839 * 107.99202 * 179.97438 * 5 4 2 7 7 N 1.28744 * 109.39615 * 359.72768 * 6 5 4 8 8 N 1.29024 * 108.80750 * 0.44331 * 7 6 5 9 9 C 1.46500 * 126.43776 * 179.83183 * 8 7 6 10 10 C 1.50690 * 109.47225 * 269.68999 * 9 8 7 11 11 O 1.21286 * 119.99969 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.48415 * 127.82623 * 0.02562 * 12 10 9 14 14 C 1.54385 * 104.48688 * 219.60689 * 13 12 10 15 15 H 1.09002 * 110.34590 * 95.02774 * 14 13 12 16 16 N 1.46501 * 110.34265 * 217.17988 * 14 13 12 17 17 C 1.36932 * 120.00202 * 272.12526 * 16 14 13 18 18 H 1.08004 * 120.00142 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00464 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99375 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00370 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46940 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47184 * 119.99708 * 21 19 17 24 24 H 1.48490 * 109.47331 * 239.99736 * 21 19 17 25 25 C 1.54281 * 105.05132 * 336.10309 * 14 13 12 26 26 C 1.53002 * 110.34627 * 118.92618 * 25 14 13 27 27 C 1.53001 * 110.34241 * 241.18419 * 25 14 13 28 28 C 1.48150 * 127.83567 * 179.97438 * 12 10 9 29 29 H 1.08997 * 109.47110 * 300.00003 * 1 2 3 30 30 H 1.08998 * 109.47136 * 60.00075 * 1 2 3 31 31 H 1.09003 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47185 * 239.99453 * 2 1 3 33 33 H 1.09000 * 109.46811 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46997 * 300.00011 * 3 2 1 35 35 H 1.09000 * 109.46781 * 59.99540 * 3 2 1 36 36 H 1.09002 * 109.46903 * 149.68539 * 9 8 7 37 37 H 1.09003 * 109.47008 * 29.69019 * 9 8 7 38 38 H 1.08997 * 110.44874 * 100.86930 * 13 12 10 39 39 H 1.09004 * 110.48780 * 338.35458 * 13 12 10 40 40 H 0.97004 * 119.99809 * 92.11640 * 16 14 13 41 41 H 0.96999 * 119.99854 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.46945 * 59.99812 * 26 25 14 43 43 H 1.09000 * 109.47393 * 180.02562 * 26 25 14 44 44 H 1.08997 * 109.46826 * 300.00147 * 26 25 14 45 45 H 1.09001 * 109.47416 * 60.00373 * 27 25 14 46 46 H 1.09004 * 109.47417 * 179.97438 * 27 25 14 47 47 H 1.08998 * 109.47229 * 299.99650 * 27 25 14 48 48 H 1.08999 * 110.41112 * 21.60272 * 28 12 10 49 49 H 1.09001 * 110.50499 * 259.22308 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7969 -0.3788 2.4765 6 7 2.3980 -1.2292 3.2351 7 7 3.0061 -2.0981 2.5052 8 7 2.8094 -1.8089 1.2633 9 6 3.3289 -2.5422 0.1063 10 6 4.6669 -1.9732 -0.2896 11 8 5.1398 -1.0460 0.3331 12 7 5.3376 -2.4938 -1.3363 13 6 4.9252 -3.6177 -2.2135 14 6 6.2259 -4.4115 -2.4614 15 1 6.3083 -5.2351 -1.7521 16 7 6.2589 -4.9188 -3.8354 17 6 5.6960 -6.1315 -4.1313 18 1 5.2280 -6.7143 -3.3516 19 6 5.7278 -6.6125 -5.4331 20 7 6.2985 -5.9025 -6.3831 21 14 4.9605 -8.2671 -5.8365 22 1 4.3876 -8.8612 -4.6020 23 1 3.8833 -8.0813 -6.8417 24 1 5.9999 -9.1737 -6.3866 25 6 7.3646 -3.3949 -2.2375 26 6 8.2654 -3.8498 -1.0875 27 6 8.1825 -3.2217 -3.5189 28 6 6.6530 -2.0734 -1.8727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.6325 -2.4468 -0.7269 37 1 3.4439 -3.5948 0.3650 38 1 4.5254 -3.2396 -3.1544 39 1 4.1880 -4.2436 -1.7105 40 1 6.6795 -4.3955 -4.5356 41 1 6.3204 -6.2383 -7.2928 42 1 8.6981 -4.8210 -1.3273 43 1 9.0636 -3.1221 -0.9415 44 1 7.6759 -3.9302 -0.1743 45 1 7.5348 -2.8597 -4.3173 46 1 8.9817 -2.5011 -3.3452 47 1 8.6136 -4.1804 -3.8071 48 1 7.2187 -1.5342 -1.1128 49 1 6.5232 -1.4537 -2.7599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996388084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:39 Heat of formation + Delta-G solvation = 99.158897 kcal Electronic energy + Delta-G solvation = -30291.971085 eV Core-core repulsion = 26292.517138 eV Total energy + Delta-G solvation = -3999.453947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.29144 -40.32631 -38.42473 -36.41138 -35.47322 -34.39425 -33.39374 -31.60846 -30.98590 -29.61686 -27.84711 -27.54131 -27.04450 -26.13795 -24.57586 -24.07621 -23.33892 -21.94711 -20.98523 -19.75949 -18.73392 -18.06509 -17.43659 -17.34446 -16.46350 -16.21039 -15.81523 -15.21598 -15.03641 -14.80141 -14.34588 -14.17487 -13.98065 -13.62806 -13.56335 -13.46475 -13.01928 -12.84324 -12.70500 -12.53094 -12.28215 -12.19475 -11.96163 -11.86966 -11.77485 -11.67608 -11.49828 -11.44139 -11.38710 -11.10176 -11.09079 -11.05559 -10.72611 -10.64198 -10.30691 -10.20690 -10.04660 -9.97913 -9.79079 -9.19765 -8.75189 -7.21969 -5.98432 -3.29261 1.06806 1.65235 2.17380 2.25234 2.79641 3.29537 3.36180 3.38357 3.64778 3.93961 4.04542 4.22775 4.41253 4.50924 4.63030 4.75051 4.76633 4.87968 4.91380 5.03194 5.26963 5.29936 5.31113 5.42090 5.42555 5.46796 5.49480 5.54602 5.59896 5.61641 5.67245 5.79557 5.84576 5.85340 5.91134 5.93722 5.98405 6.05507 6.06683 6.18601 6.24656 6.33299 6.44004 6.67058 6.76779 7.39095 7.51298 7.81922 8.19738 8.52954 9.32302 9.85231 10.19888 11.23408 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.002997 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.447799 B = 9340.409181 C =10150.377842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 C -0.143 4.143 4 C 0.203 3.797 5 N -0.302 5.302 6 N -0.076 5.076 7 N -0.085 5.085 8 N -0.292 5.292 9 C 0.096 3.904 10 C 0.520 3.480 11 O -0.534 6.534 12 N -0.609 5.609 13 C 0.067 3.933 14 C 0.176 3.824 15 H 0.065 0.935 16 N -0.714 5.714 17 C -0.252 4.252 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C -0.087 4.087 26 C -0.132 4.132 27 C -0.131 4.131 28 C 0.119 3.881 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.392 0.608 41 H 0.257 0.743 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 9.987 7.479 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.201 4.201 4 C -0.076 4.076 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.070 5.070 8 N -0.092 5.092 9 C -0.030 4.030 10 C 0.305 3.695 11 O -0.411 6.411 12 N -0.343 5.343 13 C -0.058 4.058 14 C 0.063 3.937 15 H 0.083 0.917 16 N -0.357 5.357 17 C -0.383 4.383 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.089 4.089 26 C -0.189 4.189 27 C -0.189 4.189 28 C -0.003 4.003 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.935 10.154 9.296 14.991 hybrid contribution -0.232 -1.009 -1.604 1.909 sum -6.166 9.145 7.692 13.447 Atomic orbital electron populations 1.21849 0.91893 1.02766 1.03659 1.19802 0.97358 0.96582 0.89623 1.21821 1.01942 0.93032 1.03328 1.26065 0.94792 0.88739 0.97961 1.74927 1.20738 1.21076 0.98320 1.78583 1.07004 0.98914 1.22458 1.78893 1.19102 1.21810 0.87245 1.47883 1.33681 1.20788 1.06880 1.21980 0.96235 0.98698 0.86089 1.19719 0.85888 0.83648 0.80249 1.90795 1.68648 1.28835 1.52864 1.48996 1.21290 1.35079 1.28918 1.23976 1.01500 0.86898 0.93408 1.21098 0.89613 0.93259 0.89702 0.91672 1.42738 1.68460 1.21315 1.03221 1.19284 1.30247 0.95326 0.93415 0.91013 1.24752 1.00924 0.98689 0.95909 1.69655 1.48537 1.38248 1.01042 0.86143 0.78534 0.83585 0.78015 1.20478 1.21768 1.21743 1.21772 0.96131 0.94448 0.96527 1.21799 0.98701 1.01441 0.96957 1.21692 0.98898 1.02583 0.95715 1.22535 0.82517 0.96804 0.98446 0.90971 0.90723 0.92313 0.89090 0.91914 0.90879 0.91098 0.84335 0.83897 0.89688 0.91072 0.77033 0.93304 0.91939 0.92941 0.93096 0.91893 0.93503 0.90701 0.90309 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.18 37.16 0.34 -0.65 16 2 C -0.01 -0.10 3.26 -91.77 -0.30 -0.40 16 3 C -0.14 -1.23 9.18 37.16 0.34 -0.89 16 4 C 0.20 2.52 6.64 -155.43 -1.03 1.49 16 5 N -0.30 -4.52 12.36 32.70 0.40 -4.11 16 6 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 7 N -0.09 -1.33 13.29 60.35 0.80 -0.53 16 8 N -0.29 -3.78 2.83 -59.44 -0.17 -3.95 16 9 C 0.10 0.96 5.55 -5.20 -0.03 0.93 16 10 C 0.52 6.84 7.98 -10.99 -0.09 6.75 16 11 O -0.53 -9.09 16.70 5.55 0.09 -9.00 16 12 N -0.61 -7.76 3.32 -169.05 -0.56 -8.32 16 13 C 0.07 0.90 6.65 -2.26 -0.02 0.88 16 14 C 0.18 2.82 3.33 -66.53 -0.22 2.60 16 15 H 0.07 1.09 7.67 -51.93 -0.40 0.70 16 16 N -0.71 -14.83 4.61 -52.07 -0.24 -15.07 16 17 C -0.25 -6.04 9.96 -15.06 -0.15 -6.19 16 18 H 0.07 1.67 7.83 -52.48 -0.41 1.26 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 20 N -0.93 -25.17 13.06 55.49 0.72 -24.45 16 21 Si 0.91 20.34 29.55 -169.99 -5.02 15.32 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.09 -1.21 1.03 -153.07 -0.16 -1.36 16 26 C -0.13 -1.70 8.24 37.16 0.31 -1.39 16 27 C -0.13 -1.89 7.11 37.16 0.26 -1.63 16 28 C 0.12 1.56 6.15 -2.37 -0.01 1.54 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.65 6.85 -51.93 -0.36 0.29 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 0.90 7.13 -51.93 -0.37 0.53 16 37 H 0.14 1.18 7.96 -51.93 -0.41 0.77 16 38 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 39 H 0.07 0.81 7.32 -51.93 -0.38 0.43 16 40 H 0.39 8.64 5.05 -40.82 -0.21 8.43 16 41 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.97 6.95 -51.93 -0.36 0.60 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 1.25 7.74 -51.93 -0.40 0.85 16 48 H 0.08 1.06 7.60 -51.93 -0.39 0.67 16 49 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -31.50 397.93 -5.89 -37.40 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.88 Total: 5.72 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.85 Total: 1.44 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 1.77 Total: -56.87 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.50 -5.89 -37.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996388084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.556 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds