Wall clock time and date at job start Tue Mar 31 2020 19:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47236 * 2 1 4 4 C 1.50703 * 109.47294 * 120.00042 * 2 1 3 5 5 N 1.31077 * 126.65806 * 300.04613 * 4 2 1 6 6 N 1.28839 * 107.99202 * 179.97438 * 5 4 2 7 7 N 1.28744 * 109.39615 * 359.72768 * 6 5 4 8 8 N 1.29024 * 108.80750 * 0.44331 * 7 6 5 9 9 C 1.46500 * 126.43776 * 179.83183 * 8 7 6 10 10 C 1.50690 * 109.47225 * 269.68999 * 9 8 7 11 11 O 1.21286 * 119.99969 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.48415 * 127.82623 * 0.02562 * 12 10 9 14 14 C 1.54385 * 104.48688 * 219.60689 * 13 12 10 15 15 H 1.09002 * 110.34590 * 95.02774 * 14 13 12 16 16 N 1.46501 * 110.34265 * 217.17988 * 14 13 12 17 17 C 1.36932 * 120.00202 * 272.12526 * 16 14 13 18 18 H 1.08004 * 120.00142 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00464 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99375 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00370 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46940 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47184 * 119.99708 * 21 19 17 24 24 H 1.48490 * 109.47331 * 239.99736 * 21 19 17 25 25 C 1.54281 * 105.05132 * 336.10309 * 14 13 12 26 26 C 1.53002 * 110.34627 * 118.92618 * 25 14 13 27 27 C 1.53001 * 110.34241 * 241.18419 * 25 14 13 28 28 C 1.48150 * 127.83567 * 179.97438 * 12 10 9 29 29 H 1.08997 * 109.47110 * 300.00003 * 1 2 3 30 30 H 1.08998 * 109.47136 * 60.00075 * 1 2 3 31 31 H 1.09003 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47185 * 239.99453 * 2 1 3 33 33 H 1.09000 * 109.46811 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46997 * 300.00011 * 3 2 1 35 35 H 1.09000 * 109.46781 * 59.99540 * 3 2 1 36 36 H 1.09002 * 109.46903 * 149.68539 * 9 8 7 37 37 H 1.09003 * 109.47008 * 29.69019 * 9 8 7 38 38 H 1.08997 * 110.44874 * 100.86930 * 13 12 10 39 39 H 1.09004 * 110.48780 * 338.35458 * 13 12 10 40 40 H 0.97004 * 119.99809 * 92.11640 * 16 14 13 41 41 H 0.96999 * 119.99854 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.46945 * 59.99812 * 26 25 14 43 43 H 1.09000 * 109.47393 * 180.02562 * 26 25 14 44 44 H 1.08997 * 109.46826 * 300.00147 * 26 25 14 45 45 H 1.09001 * 109.47416 * 60.00373 * 27 25 14 46 46 H 1.09004 * 109.47417 * 179.97438 * 27 25 14 47 47 H 1.08998 * 109.47229 * 299.99650 * 27 25 14 48 48 H 1.08999 * 110.41112 * 21.60272 * 28 12 10 49 49 H 1.09001 * 110.50499 * 259.22308 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7969 -0.3788 2.4765 6 7 2.3980 -1.2292 3.2351 7 7 3.0061 -2.0981 2.5052 8 7 2.8094 -1.8089 1.2633 9 6 3.3289 -2.5422 0.1063 10 6 4.6669 -1.9732 -0.2896 11 8 5.1398 -1.0460 0.3331 12 7 5.3376 -2.4938 -1.3363 13 6 4.9252 -3.6177 -2.2135 14 6 6.2259 -4.4115 -2.4614 15 1 6.3083 -5.2351 -1.7521 16 7 6.2589 -4.9188 -3.8354 17 6 5.6960 -6.1315 -4.1313 18 1 5.2280 -6.7143 -3.3516 19 6 5.7278 -6.6125 -5.4331 20 7 6.2985 -5.9025 -6.3831 21 14 4.9605 -8.2671 -5.8365 22 1 4.3876 -8.8612 -4.6020 23 1 3.8833 -8.0813 -6.8417 24 1 5.9999 -9.1737 -6.3866 25 6 7.3646 -3.3949 -2.2375 26 6 8.2654 -3.8498 -1.0875 27 6 8.1825 -3.2217 -3.5189 28 6 6.6530 -2.0734 -1.8727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.6325 -2.4468 -0.7269 37 1 3.4439 -3.5948 0.3650 38 1 4.5254 -3.2396 -3.1544 39 1 4.1880 -4.2436 -1.7105 40 1 6.6795 -4.3955 -4.5356 41 1 6.3204 -6.2383 -7.2928 42 1 8.6981 -4.8210 -1.3273 43 1 9.0636 -3.1221 -0.9415 44 1 7.6759 -3.9302 -0.1743 45 1 7.5348 -2.8597 -4.3173 46 1 8.9817 -2.5011 -3.3452 47 1 8.6136 -4.1804 -3.8071 48 1 7.2187 -1.5342 -1.1128 49 1 6.5232 -1.4537 -2.7599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996388084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:38 Heat of formation + Delta-G solvation = 79.023097 kcal Electronic energy + Delta-G solvation = -30292.844238 eV Core-core repulsion = 26292.517138 eV Total energy + Delta-G solvation = -4000.327101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.32876 -41.44816 -39.60445 -37.18346 -36.47225 -35.88008 -34.70812 -32.65026 -32.56249 -30.58701 -29.17736 -28.25228 -28.13131 -27.21623 -25.70054 -25.50366 -24.38879 -23.25204 -21.81253 -20.78635 -19.98088 -19.21728 -18.92705 -18.38429 -17.56025 -17.28120 -16.77238 -16.45337 -16.22534 -15.78563 -15.62435 -15.44883 -15.21700 -14.86335 -14.46053 -14.31493 -14.21772 -13.96171 -13.80540 -13.35632 -13.28017 -13.20445 -13.10593 -13.02037 -12.84056 -12.73477 -12.70366 -12.51591 -12.49401 -12.32511 -12.30705 -12.07249 -11.98802 -11.93226 -11.90169 -11.44936 -11.33103 -11.25555 -11.01712 -10.91198 -9.90335 -8.96078 -7.89264 -5.16771 0.05537 0.75626 1.09971 1.23931 1.52366 1.55535 1.62498 1.77438 2.60795 2.84252 3.04753 3.10362 3.43798 3.53414 3.63660 3.74141 3.82746 3.89686 3.99535 4.03115 4.10584 4.15591 4.33867 4.35399 4.40616 4.57265 4.58394 4.60477 4.73739 4.76362 4.80583 4.83724 4.86631 4.88373 4.89302 4.94372 5.02342 5.07857 5.12826 5.16300 5.26220 5.31786 5.33248 5.44641 5.52514 5.63205 6.32235 6.34127 6.77804 7.42239 7.45283 8.15555 8.38876 9.33727 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.002997 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.447799 B = 9340.409181 C =10150.377842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.014 4.014 3 C -0.140 4.140 4 C 0.210 3.790 5 N -0.326 5.326 6 N -0.104 5.104 7 N -0.104 5.104 8 N -0.291 5.291 9 C 0.092 3.908 10 C 0.523 3.477 11 O -0.575 6.575 12 N -0.602 5.602 13 C 0.080 3.920 14 C 0.167 3.833 15 H 0.061 0.939 16 N -0.725 5.725 17 C -0.235 4.235 18 H 0.080 0.920 19 C -0.067 4.067 20 N -0.965 5.965 21 Si 0.961 3.039 22 H -0.265 1.265 23 H -0.297 1.297 24 H -0.303 1.303 25 C -0.081 4.081 26 C -0.127 4.127 27 C -0.123 4.123 28 C 0.121 3.879 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.182 0.818 37 H 0.166 0.834 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.384 0.616 41 H 0.249 0.751 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.077 0.923 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 10.114 7.468 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.198 4.198 4 C -0.068 4.068 5 N -0.174 5.174 6 N -0.098 5.098 7 N -0.090 5.090 8 N -0.092 5.092 9 C -0.032 4.032 10 C 0.310 3.690 11 O -0.455 6.455 12 N -0.335 5.335 13 C -0.045 4.045 14 C 0.056 3.944 15 H 0.079 0.921 16 N -0.367 5.367 17 C -0.367 4.367 18 H 0.098 0.902 19 C -0.260 4.260 20 N -0.615 5.615 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.225 1.225 24 H -0.231 1.231 25 C -0.083 4.083 26 C -0.184 4.184 27 C -0.181 4.181 28 C -0.001 4.001 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.058 0.942 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.199 0.801 37 H 0.184 0.816 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.220 0.780 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.364 10.275 9.337 15.716 hybrid contribution 0.274 -0.984 -1.547 1.854 sum -7.090 9.291 7.790 14.045 Atomic orbital electron populations 1.21849 0.90278 1.03278 1.04309 1.20125 0.98574 0.96220 0.88602 1.21810 1.00396 0.93356 1.04265 1.26782 0.93537 0.88150 0.98354 1.74857 1.21540 1.21487 0.99550 1.78545 1.08005 0.99709 1.23533 1.78802 1.19531 1.22189 0.88480 1.48070 1.33411 1.21036 1.06698 1.22377 0.95232 0.99174 0.86456 1.20158 0.86604 0.82875 0.79319 1.90794 1.69902 1.30772 1.54008 1.48912 1.21057 1.34744 1.28769 1.23654 1.00114 0.86886 0.93799 1.21295 0.91944 0.93990 0.87129 0.92142 1.42858 1.68319 1.20595 1.04929 1.19652 1.27899 0.95941 0.93162 0.90165 1.25378 1.02761 1.01490 0.96365 1.69786 1.51093 1.39727 1.00923 0.85261 0.77191 0.80521 0.77878 1.18933 1.22493 1.23105 1.21700 0.95665 0.94353 0.96552 1.21751 0.98880 1.01416 0.96370 1.21580 0.99307 1.01619 0.95605 1.22486 0.82749 0.96172 0.98694 0.92203 0.88212 0.91883 0.86743 0.94201 0.88070 0.92097 0.80054 0.81648 0.90098 0.88266 0.77968 0.94230 0.92738 0.91539 0.93105 0.93049 0.91234 0.93369 0.90495 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.18 71.98 0.66 -0.84 16 2 C -0.01 -0.20 3.26 -11.54 -0.04 -0.24 16 3 C -0.14 -2.14 9.18 71.98 0.66 -1.48 16 4 C 0.21 4.87 6.64 138.13 0.92 5.79 16 5 N -0.33 -9.62 12.36 -50.45 -0.62 -10.24 16 6 N -0.10 -3.45 13.43 37.01 0.50 -2.95 16 7 N -0.10 -3.17 13.29 37.02 0.49 -2.67 16 8 N -0.29 -6.96 2.83 -341.98 -0.97 -7.93 16 9 C 0.09 1.51 5.55 85.63 0.48 1.98 16 10 C 0.52 12.35 7.98 87.65 0.70 13.05 16 11 O -0.57 -18.71 16.70 -3.05 -0.05 -18.76 16 12 N -0.60 -13.63 3.32 -807.12 -2.68 -16.31 16 13 C 0.08 1.88 6.65 86.48 0.57 2.45 16 14 C 0.17 5.04 3.33 45.90 0.15 5.20 16 15 H 0.06 1.90 7.67 -2.39 -0.02 1.89 16 16 N -0.72 -29.42 4.61 -318.66 -1.47 -30.88 16 17 C -0.23 -10.96 9.96 84.03 0.84 -10.13 16 18 H 0.08 3.55 7.83 -2.91 -0.02 3.53 16 19 C -0.07 -3.40 5.50 84.86 0.47 -2.94 16 20 N -0.96 -53.02 13.06 21.65 0.28 -52.73 16 21 Si 0.96 41.61 29.55 68.60 2.03 43.64 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.30 -13.06 7.11 99.48 0.71 -12.36 16 24 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 25 C -0.08 -2.12 1.03 -51.25 -0.05 -2.17 16 26 C -0.13 -3.07 8.24 71.98 0.59 -2.48 16 27 C -0.12 -3.47 7.11 71.98 0.51 -2.95 16 28 C 0.12 2.92 6.15 86.56 0.53 3.45 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 1.13 6.85 -2.39 -0.02 1.12 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.18 1.40 7.13 -2.39 -0.02 1.38 16 37 H 0.17 2.04 7.96 -2.39 -0.02 2.02 16 38 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 39 H 0.10 1.80 7.32 -2.39 -0.02 1.79 16 40 H 0.38 16.92 5.05 -92.71 -0.47 16.45 16 41 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.56 6.95 -2.39 -0.02 1.54 16 46 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.05 1.61 7.74 -2.39 -0.02 1.59 16 48 H 0.08 1.93 7.60 -2.39 -0.02 1.91 16 49 H 0.08 1.88 7.83 -2.39 -0.02 1.86 16 Total: -1.00 -70.19 397.93 4.99 -65.21 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.49 Total: 24.94 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.99 Total: 8.70 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -4.47 Total: -123.73 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.76 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -70.19 4.99 -65.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996388084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.228 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds