Wall clock time and date at job start Tue Mar 31 2020 19:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.52998 * 109.47295 * 240.00355 * 2 1 3 5 5 N 1.46503 * 109.47605 * 119.99893 * 2 1 3 6 6 N 1.28778 * 125.44648 * 240.00360 * 5 2 1 7 7 N 1.29002 * 108.71970 * 179.72272 * 6 5 2 8 8 C 1.33312 * 107.35466 * 0.43285 * 7 6 5 9 9 C 1.50700 * 126.54693 * 179.83826 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.68246 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46931 * 120.63086 * 0.02562 * 12 10 9 14 14 C 1.52760 * 109.00543 * 233.58109 * 13 12 10 15 15 C 1.53039 * 109.38459 * 305.58756 * 14 13 12 16 16 N 1.46503 * 109.44783 * 181.25546 * 15 14 13 17 17 C 1.36940 * 119.99918 * 84.94173 * 16 15 14 18 18 H 1.07999 * 120.00101 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99809 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99625 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47173 * 60.00353 * 21 19 17 23 23 H 1.48505 * 109.46531 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47275 * 299.99606 * 21 19 17 25 25 C 1.53042 * 109.54031 * 61.24177 * 15 14 13 26 26 C 1.46925 * 120.62933 * 180.27723 * 12 10 9 27 27 N 1.28878 * 125.44741 * 59.99844 * 5 2 1 28 28 H 1.09002 * 109.46739 * 299.99845 * 1 2 3 29 29 H 1.08992 * 109.46922 * 60.00068 * 1 2 3 30 30 H 1.09003 * 109.46525 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47197 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46977 * 300.00153 * 3 2 1 33 33 H 1.09001 * 109.47223 * 59.99643 * 3 2 1 34 34 H 1.09009 * 109.47082 * 299.99619 * 4 2 1 35 35 H 1.08993 * 109.47449 * 59.99132 * 4 2 1 36 36 H 1.08994 * 109.47597 * 179.97438 * 4 2 1 37 37 H 1.09004 * 109.47210 * 149.68539 * 9 8 7 38 38 H 1.08994 * 109.47551 * 29.68191 * 9 8 7 39 39 H 1.08997 * 109.58191 * 353.41302 * 13 12 10 40 40 H 1.09000 * 109.58404 * 113.84014 * 13 12 10 41 41 H 1.09004 * 109.56227 * 185.55021 * 14 13 12 42 42 H 1.09000 * 109.38786 * 65.51167 * 14 13 12 43 43 H 1.09005 * 109.46040 * 301.21818 * 15 14 13 44 44 H 0.96999 * 119.99989 * 264.93458 * 16 15 14 45 45 H 0.97000 * 119.99847 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.49700 * 178.68705 * 25 15 14 47 47 H 1.08997 * 109.52427 * 58.60198 * 25 15 14 48 48 H 1.09005 * 109.58470 * 246.15337 * 26 12 10 49 49 H 1.08995 * 109.58817 * 6.44095 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0185 -0.6906 1.1962 6 7 2.7620 -0.1683 2.1088 7 7 2.9941 -1.0584 3.0133 8 6 2.3754 -2.1779 2.6375 9 6 2.3655 -3.4899 3.3789 10 6 3.5223 -4.3373 2.9155 11 8 4.2804 -3.9171 2.0672 12 7 3.7180 -5.5598 3.4482 13 6 2.8117 -6.0801 4.4811 14 6 3.6349 -6.5132 5.6929 15 6 4.7140 -7.5025 5.2466 16 7 5.4851 -7.9418 6.4122 17 6 5.0329 -8.9815 7.1801 18 1 4.1076 -9.4775 6.9267 19 6 5.7639 -9.3981 8.2843 20 7 6.8918 -8.7940 8.5928 21 14 5.1466 -10.8160 9.3321 22 1 5.0336 -12.0374 8.4952 23 1 6.1018 -11.0636 10.4419 24 1 3.8144 -10.4744 9.8920 25 6 5.6487 -6.8224 4.2437 26 6 4.8448 -6.3952 3.0111 27 7 1.7728 -1.9178 1.5034 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.4298 -4.0125 3.1802 38 1 2.4574 -3.3034 4.4488 39 1 2.1098 -5.3007 4.7775 40 1 2.2648 -6.9376 4.0890 41 1 2.9835 -6.9910 6.4247 42 1 4.1062 -5.6387 6.1414 43 1 4.2431 -8.3658 4.7764 44 1 6.3160 -7.4962 6.6400 45 1 7.4024 -9.0848 9.3646 46 1 6.4306 -7.5202 3.9441 47 1 6.1015 -5.9448 4.7050 48 1 4.4666 -7.2789 2.4970 49 1 5.4824 -5.8246 2.3360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996636817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:09 Heat of formation + Delta-G solvation = 98.815500 kcal Electronic energy + Delta-G solvation = -29190.769183 eV Core-core repulsion = 25191.300346 eV Total energy + Delta-G solvation = -3999.468838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.44567 -40.08673 -38.03604 -37.37362 -34.49951 -33.72426 -33.35454 -32.08732 -31.03842 -29.73352 -28.92831 -28.08608 -27.92088 -24.97963 -24.69656 -23.20029 -22.96813 -22.08966 -20.88266 -20.27614 -18.88593 -17.65810 -17.33765 -17.07542 -16.85294 -15.92567 -15.46114 -14.92766 -14.81168 -14.64611 -14.50942 -13.88086 -13.85110 -13.75460 -13.64149 -13.40445 -13.31093 -13.13647 -12.99412 -12.86880 -12.53976 -12.38532 -12.16546 -12.09395 -11.99180 -11.89025 -11.58398 -11.54867 -10.99551 -10.96041 -10.92742 -10.87159 -10.82328 -10.48225 -10.37192 -10.26695 -9.83761 -9.71526 -9.64552 -8.91270 -8.52491 -6.98654 -5.77861 -3.07295 1.16217 1.65948 2.04738 2.62211 3.07053 3.42506 3.47017 3.48355 3.60319 3.90290 4.01033 4.11299 4.38026 4.48847 4.57088 4.85197 4.88632 4.94919 5.01504 5.03639 5.05521 5.10912 5.12698 5.26509 5.32298 5.35535 5.40277 5.41147 5.49092 5.53279 5.55472 5.61513 5.65791 5.71872 5.80001 5.94177 6.00056 6.11394 6.22447 6.36584 6.38889 6.50716 6.61224 6.88499 7.03762 7.45486 7.67055 8.17259 8.31553 8.40276 9.51358 10.09106 10.43641 11.44539 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032590 B = 0.001960 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.953261 B =14281.413865 C =14392.169571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 C -0.153 4.153 4 C -0.159 4.159 5 N -0.131 5.131 6 N -0.063 5.063 7 N -0.275 5.275 8 C 0.188 3.812 9 C -0.044 4.044 10 C 0.523 3.477 11 O -0.542 6.542 12 N -0.603 5.603 13 C 0.105 3.895 14 C -0.153 4.153 15 C 0.179 3.821 16 N -0.724 5.724 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.139 4.139 26 C 0.118 3.882 27 N -0.297 5.297 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.360 17.797 -19.802 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.098 3.902 3 C -0.211 4.211 4 C -0.217 4.217 5 N -0.045 5.045 6 N -0.056 5.056 7 N -0.146 5.146 8 C -0.095 4.095 9 C -0.087 4.087 10 C 0.310 3.690 11 O -0.419 6.419 12 N -0.336 5.336 13 C -0.018 4.018 14 C -0.194 4.194 15 C 0.069 3.931 16 N -0.364 5.364 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.178 4.178 26 C -0.005 4.005 27 N -0.147 5.147 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.882 18.511 -20.305 31.248 hybrid contribution -0.140 -1.217 1.009 1.587 sum -15.022 17.293 -19.297 29.951 Atomic orbital electron populations 1.22223 0.90936 1.04489 1.03938 1.21361 0.96031 0.93014 0.79795 1.22087 1.03284 0.91541 1.04165 1.22229 1.02647 1.01926 0.94914 1.50402 1.30425 1.05589 1.18078 1.78898 1.08708 1.22468 0.95483 1.75827 1.19896 0.98849 1.20006 1.24622 0.96377 0.96958 0.91527 1.19921 1.00218 0.87655 1.00916 1.20049 0.85752 0.81410 0.81838 1.90704 1.47037 1.71479 1.32690 1.48106 1.29523 1.16033 1.39974 1.21846 0.92072 0.99138 0.88750 1.22618 0.99572 1.01146 0.96088 1.20163 0.90997 0.93735 0.88241 1.42432 1.26017 1.39070 1.28911 1.19181 1.04785 1.07821 1.05426 0.91206 1.24760 0.97252 0.99861 0.99065 1.69652 1.15520 1.43468 1.29335 0.86278 0.77665 0.82278 0.80003 1.21296 1.21734 1.21274 1.22217 0.98835 1.01094 0.95676 1.21631 0.87747 0.93956 0.97147 1.74513 1.24519 0.99383 1.16286 0.91434 0.89231 0.90427 0.90552 0.89326 0.90612 0.90409 0.89289 0.91286 0.86032 0.85480 0.90412 0.91142 0.90448 0.92013 0.93389 0.78232 0.93431 0.90539 0.91745 0.91479 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 8.66 37.16 0.32 -0.47 16 2 C 0.18 1.27 1.30 -131.82 -0.17 1.10 16 3 C -0.15 -0.82 7.91 37.16 0.29 -0.52 16 4 C -0.16 -0.98 8.66 37.16 0.32 -0.66 16 5 N -0.13 -1.52 3.73 0.48 0.00 -1.52 16 6 N -0.06 -0.87 12.24 60.35 0.74 -0.13 16 7 N -0.27 -4.26 12.50 32.44 0.41 -3.85 16 8 C 0.19 2.62 6.86 -156.64 -1.07 1.54 16 9 C -0.04 -0.50 4.68 -29.03 -0.14 -0.64 16 10 C 0.52 7.61 7.69 -10.98 -0.08 7.53 16 11 O -0.54 -9.97 15.45 5.55 0.09 -9.88 16 12 N -0.60 -8.20 2.98 -173.00 -0.52 -8.72 16 13 C 0.11 1.25 6.32 -3.93 -0.02 1.22 16 14 C -0.15 -2.44 5.64 -26.83 -0.15 -2.59 16 15 C 0.18 3.33 2.73 -67.89 -0.19 3.15 16 16 N -0.72 -17.57 5.12 -53.38 -0.27 -17.84 16 17 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.14 -2.29 5.55 -26.59 -0.15 -2.44 16 26 C 0.12 1.68 6.44 -3.69 -0.02 1.66 16 27 N -0.30 -3.86 11.83 32.46 0.38 -3.48 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.12 1.01 7.95 -51.93 -0.41 0.59 16 38 H 0.13 1.23 7.68 -51.93 -0.40 0.83 16 39 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 44 H 0.38 10.09 7.80 -40.82 -0.32 9.78 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -35.41 398.35 -6.88 -42.29 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.11 Total: 5.52 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.31 Total: 1.79 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 1.47 Total: -62.71 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.41 -6.88 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996636817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.110 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds