Wall clock time and date at job start Tue Mar 31 2020 19:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.52998 * 109.47295 * 240.00355 * 2 1 3 5 5 N 1.46503 * 109.47605 * 119.99893 * 2 1 3 6 6 N 1.28778 * 125.44648 * 240.00360 * 5 2 1 7 7 N 1.29002 * 108.71970 * 179.72272 * 6 5 2 8 8 C 1.33312 * 107.35466 * 0.43285 * 7 6 5 9 9 C 1.50700 * 126.54693 * 179.83826 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.68246 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46931 * 120.63086 * 0.02562 * 12 10 9 14 14 C 1.52760 * 109.00543 * 233.58109 * 13 12 10 15 15 C 1.53039 * 109.38459 * 305.58756 * 14 13 12 16 16 N 1.46503 * 109.44783 * 181.25546 * 15 14 13 17 17 C 1.36940 * 119.99918 * 84.94173 * 16 15 14 18 18 H 1.07999 * 120.00101 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99809 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99625 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47173 * 60.00353 * 21 19 17 23 23 H 1.48505 * 109.46531 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47275 * 299.99606 * 21 19 17 25 25 C 1.53042 * 109.54031 * 61.24177 * 15 14 13 26 26 C 1.46925 * 120.62933 * 180.27723 * 12 10 9 27 27 N 1.28878 * 125.44741 * 59.99844 * 5 2 1 28 28 H 1.09002 * 109.46739 * 299.99845 * 1 2 3 29 29 H 1.08992 * 109.46922 * 60.00068 * 1 2 3 30 30 H 1.09003 * 109.46525 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47197 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46977 * 300.00153 * 3 2 1 33 33 H 1.09001 * 109.47223 * 59.99643 * 3 2 1 34 34 H 1.09009 * 109.47082 * 299.99619 * 4 2 1 35 35 H 1.08993 * 109.47449 * 59.99132 * 4 2 1 36 36 H 1.08994 * 109.47597 * 179.97438 * 4 2 1 37 37 H 1.09004 * 109.47210 * 149.68539 * 9 8 7 38 38 H 1.08994 * 109.47551 * 29.68191 * 9 8 7 39 39 H 1.08997 * 109.58191 * 353.41302 * 13 12 10 40 40 H 1.09000 * 109.58404 * 113.84014 * 13 12 10 41 41 H 1.09004 * 109.56227 * 185.55021 * 14 13 12 42 42 H 1.09000 * 109.38786 * 65.51167 * 14 13 12 43 43 H 1.09005 * 109.46040 * 301.21818 * 15 14 13 44 44 H 0.96999 * 119.99989 * 264.93458 * 16 15 14 45 45 H 0.97000 * 119.99847 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.49700 * 178.68705 * 25 15 14 47 47 H 1.08997 * 109.52427 * 58.60198 * 25 15 14 48 48 H 1.09005 * 109.58470 * 246.15337 * 26 12 10 49 49 H 1.08995 * 109.58817 * 6.44095 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0185 -0.6906 1.1962 6 7 2.7620 -0.1683 2.1088 7 7 2.9941 -1.0584 3.0133 8 6 2.3754 -2.1779 2.6375 9 6 2.3655 -3.4899 3.3789 10 6 3.5223 -4.3373 2.9155 11 8 4.2804 -3.9171 2.0672 12 7 3.7180 -5.5598 3.4482 13 6 2.8117 -6.0801 4.4811 14 6 3.6349 -6.5132 5.6929 15 6 4.7140 -7.5025 5.2466 16 7 5.4851 -7.9418 6.4122 17 6 5.0329 -8.9815 7.1801 18 1 4.1076 -9.4775 6.9267 19 6 5.7639 -9.3981 8.2843 20 7 6.8918 -8.7940 8.5928 21 14 5.1466 -10.8160 9.3321 22 1 5.0336 -12.0374 8.4952 23 1 6.1018 -11.0636 10.4419 24 1 3.8144 -10.4744 9.8920 25 6 5.6487 -6.8224 4.2437 26 6 4.8448 -6.3952 3.0111 27 7 1.7728 -1.9178 1.5034 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.4298 -4.0125 3.1802 38 1 2.4574 -3.3034 4.4488 39 1 2.1098 -5.3007 4.7775 40 1 2.2648 -6.9376 4.0890 41 1 2.9835 -6.9910 6.4247 42 1 4.1062 -5.6387 6.1414 43 1 4.2431 -8.3658 4.7764 44 1 6.3160 -7.4962 6.6400 45 1 7.4024 -9.0848 9.3646 46 1 6.4306 -7.5202 3.9441 47 1 6.1015 -5.9448 4.7050 48 1 4.4666 -7.2789 2.4970 49 1 5.4824 -5.8246 2.3360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996636817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:08 Heat of formation + Delta-G solvation = 73.994685 kcal Electronic energy + Delta-G solvation = -29191.845495 eV Core-core repulsion = 25191.300346 eV Total energy + Delta-G solvation = -4000.545149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.39292 -41.25019 -38.88019 -38.49985 -36.13743 -34.72276 -34.26604 -33.76478 -32.26783 -31.14505 -30.18716 -28.51526 -28.41638 -26.56584 -25.62423 -24.56775 -24.29779 -23.29417 -21.75971 -21.48957 -20.11071 -19.05027 -18.63800 -18.03048 -17.88040 -16.98482 -16.69690 -16.55446 -15.74767 -15.47460 -15.36789 -15.21494 -15.19525 -14.95573 -14.78046 -14.71793 -14.34793 -14.04736 -13.79806 -13.43531 -13.30773 -13.22200 -13.18906 -13.11054 -12.85372 -12.84290 -12.77702 -12.61460 -12.55928 -12.20420 -12.15907 -12.13548 -11.97617 -11.94430 -11.86064 -11.67315 -11.35304 -11.28237 -10.92006 -10.72798 -9.69770 -8.97813 -7.90271 -5.18977 0.21434 0.92292 1.04403 1.49949 1.52059 1.52792 1.58652 2.01161 2.59387 2.77880 3.15801 3.42507 3.47452 3.52982 3.59548 3.67276 3.84171 3.95341 4.09478 4.17197 4.22479 4.37414 4.38861 4.44589 4.46394 4.51018 4.53216 4.60958 4.62914 4.69025 4.72108 4.73303 4.76719 4.83673 4.86684 4.89899 5.02264 5.05897 5.11374 5.11934 5.22104 5.32933 5.36159 5.52783 5.57155 5.66033 6.30862 6.36184 7.06212 7.33289 7.36901 8.13550 8.36007 9.33287 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032590 B = 0.001960 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.953261 B =14281.413865 C =14392.169571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.118 5.118 6 N -0.079 5.079 7 N -0.312 5.312 8 C 0.175 3.825 9 C -0.041 4.041 10 C 0.522 3.478 11 O -0.587 6.587 12 N -0.601 5.601 13 C 0.111 3.889 14 C -0.144 4.144 15 C 0.172 3.828 16 N -0.740 5.740 17 C -0.233 4.233 18 H 0.082 0.918 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.972 3.028 22 H -0.278 1.278 23 H -0.302 1.302 24 H -0.275 1.275 25 C -0.128 4.128 26 C 0.125 3.875 27 N -0.302 5.302 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.127 0.873 36 H 0.049 0.951 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.369 0.631 45 H 0.248 0.752 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.089 0.911 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.651 18.018 -21.467 33.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.082 3.918 3 C -0.208 4.208 4 C -0.213 4.213 5 N -0.034 5.034 6 N -0.071 5.071 7 N -0.182 5.182 8 C -0.108 4.108 9 C -0.083 4.083 10 C 0.310 3.690 11 O -0.467 6.467 12 N -0.333 5.333 13 C -0.011 4.011 14 C -0.185 4.185 15 C 0.064 3.936 16 N -0.379 5.379 17 C -0.365 4.365 18 H 0.100 0.900 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.801 3.199 22 H -0.204 1.204 23 H -0.228 1.228 24 H -0.201 1.201 25 C -0.167 4.167 26 C 0.002 3.998 27 N -0.153 5.153 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.068 0.932 37 H 0.177 0.823 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.200 0.800 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.234 18.738 -21.997 34.168 hybrid contribution 0.862 -1.219 1.366 2.023 sum -17.372 17.519 -20.632 32.161 Atomic orbital electron populations 1.22245 0.88908 1.04373 1.05425 1.22023 0.97611 0.93628 0.78546 1.22138 1.02282 0.90647 1.05683 1.22256 1.01394 1.01668 0.95987 1.50976 1.28897 1.05258 1.18303 1.78812 1.09597 1.22635 0.96077 1.75775 1.21280 0.99844 1.21337 1.25077 0.96279 0.97479 0.91950 1.20095 1.00300 0.86354 1.01521 1.20576 0.85984 0.81366 0.81056 1.90689 1.48851 1.72336 1.34849 1.48164 1.29340 1.15801 1.40030 1.21963 0.91392 1.01352 0.86382 1.22398 0.98812 0.99471 0.97772 1.20448 0.91588 0.94736 0.86852 1.42688 1.26154 1.38764 1.30259 1.19619 1.04456 1.07513 1.04892 0.90019 1.25581 0.97848 1.02885 1.01010 1.69827 1.17165 1.45507 1.29944 0.85226 0.77091 0.79512 0.78031 1.20423 1.22841 1.20137 1.22066 0.98629 0.99955 0.96077 1.21504 0.87937 0.94709 0.95688 1.74479 1.24734 1.00043 1.16052 0.91960 0.85690 0.91307 0.92164 0.85610 0.91241 0.91687 0.85452 0.93221 0.82269 0.83582 0.86622 0.88713 0.91033 0.93642 0.92892 0.80006 0.94290 0.91161 0.93528 0.89326 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.66 71.98 0.62 -0.52 16 2 C 0.16 2.03 1.30 3.60 0.00 2.04 16 3 C -0.15 -1.36 7.91 71.98 0.57 -0.79 16 4 C -0.15 -1.67 8.66 71.98 0.62 -1.04 16 5 N -0.12 -2.69 3.73 -152.39 -0.57 -3.26 16 6 N -0.08 -2.21 12.24 37.02 0.45 -1.76 16 7 N -0.31 -9.74 12.50 -51.27 -0.64 -10.38 16 8 C 0.18 4.73 6.86 138.55 0.95 5.68 16 9 C -0.04 -0.83 4.68 29.10 0.14 -0.69 16 10 C 0.52 14.39 7.69 87.66 0.67 15.06 16 11 O -0.59 -21.55 15.45 -3.04 -0.05 -21.60 16 12 N -0.60 -15.06 2.98 -819.64 -2.44 -17.50 16 13 C 0.11 2.25 6.32 86.22 0.54 2.79 16 14 C -0.14 -4.33 5.64 30.53 0.17 -4.16 16 15 C 0.17 6.27 2.73 45.02 0.12 6.39 16 16 N -0.74 -36.23 5.12 -322.79 -1.65 -37.88 16 17 C -0.23 -12.46 9.93 84.03 0.83 -11.62 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 20 N -0.97 -59.75 13.06 21.65 0.28 -59.46 16 21 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 C -0.13 -4.22 5.55 30.69 0.17 -4.05 16 26 C 0.12 3.42 6.44 86.38 0.56 3.97 16 27 N -0.30 -7.60 11.83 -51.21 -0.61 -8.21 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.13 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.16 1.97 7.95 -2.38 -0.02 1.95 16 38 H 0.15 2.40 7.68 -2.39 -0.02 2.39 16 39 H 0.12 1.54 5.93 -2.39 -0.01 1.53 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.90 8.08 -2.38 -0.02 1.88 16 44 H 0.37 20.02 7.80 -92.71 -0.72 19.30 16 45 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 49 H 0.08 2.33 7.00 -2.39 -0.02 2.31 16 Total: -1.00 -80.54 398.35 3.48 -77.06 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.23 Total: 26.62 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.45 Total: 8.92 kcal Atomic # 7 Polarization: -133.27 SS G_CDS: -5.17 Total: -138.45 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -80.54 3.48 -77.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996636817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.056 kcal (2) G-P(sol) polarization free energy of solvation -80.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds