Wall clock time and date at job start Tue Mar 31 2020 19:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47189 * 2 1 4 4 C 1.52996 * 109.47066 * 239.99804 * 2 1 3 5 5 N 1.46500 * 109.46956 * 120.00176 * 2 1 3 6 6 N 1.28785 * 125.44211 * 239.99993 * 5 2 1 7 7 N 1.29010 * 108.72083 * 179.72415 * 6 5 2 8 8 C 1.33317 * 107.35391 * 0.43241 * 7 6 5 9 9 C 1.50692 * 126.54913 * 179.83591 * 8 7 6 10 10 C 1.50698 * 109.47368 * 269.68837 * 9 8 7 11 11 O 1.21291 * 119.99601 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00281 * 179.97438 * 10 9 8 13 13 C 1.46919 * 120.63234 * 0.02562 * 12 10 9 14 14 C 1.53195 * 108.77845 * 233.62780 * 13 12 10 15 15 C 1.53039 * 109.31257 * 305.36660 * 14 13 12 16 16 C 1.53046 * 109.52798 * 61.36716 * 15 14 13 17 17 H 1.08998 * 109.49692 * 58.57850 * 16 15 14 18 18 N 1.46493 * 109.49651 * 178.67721 * 16 15 14 19 19 C 1.36937 * 120.00289 * 204.99988 * 18 16 15 20 20 H 1.08002 * 119.99791 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00357 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99753 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99776 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47227 * 90.00401 * 23 21 19 25 25 H 1.48507 * 109.46947 * 210.00279 * 23 21 19 26 26 H 1.48498 * 109.47305 * 329.99925 * 23 21 19 27 27 C 1.46931 * 120.63154 * 180.02562 * 12 10 9 28 28 N 1.28877 * 125.45283 * 59.99558 * 5 2 1 29 29 H 1.08993 * 109.47163 * 300.00048 * 1 2 3 30 30 H 1.09005 * 109.46692 * 60.00226 * 1 2 3 31 31 H 1.09005 * 109.47267 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47123 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47119 * 299.99512 * 3 2 1 34 34 H 1.08993 * 109.47107 * 59.99917 * 3 2 1 35 35 H 1.09004 * 109.47672 * 299.99969 * 4 2 1 36 36 H 1.08994 * 109.47705 * 60.00122 * 4 2 1 37 37 H 1.09005 * 109.47437 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.47321 * 149.68487 * 9 8 7 39 39 H 1.08995 * 109.47347 * 29.68746 * 9 8 7 40 40 H 1.08997 * 109.59005 * 113.84256 * 13 12 10 41 41 H 1.09000 * 109.58835 * 353.41592 * 13 12 10 42 42 H 1.08997 * 109.50026 * 185.40903 * 14 13 12 43 43 H 1.09006 * 109.51801 * 65.33221 * 14 13 12 44 44 H 1.09002 * 109.46050 * 181.38302 * 15 14 13 45 45 H 1.09004 * 109.46034 * 301.35518 * 15 14 13 46 46 H 0.97001 * 120.00113 * 24.99839 * 18 16 15 47 47 H 0.97000 * 119.99768 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58959 * 246.15740 * 27 12 10 49 49 H 1.09003 * 109.58181 * 6.44223 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 2.7618 -0.1684 2.1088 7 7 2.9939 -1.0585 3.0134 8 6 2.3751 -2.1780 2.6377 9 6 2.3652 -3.4899 3.3790 10 6 3.5219 -4.3375 2.9158 11 8 4.2796 -3.9176 2.0668 12 7 3.7146 -5.5619 3.4448 13 6 2.8050 -6.0845 4.4735 14 6 3.6318 -6.5213 5.6870 15 6 4.7071 -7.5127 5.2365 16 6 5.6425 -6.8324 4.2341 17 1 6.0980 -5.9573 4.6976 18 7 6.6900 -7.7721 3.8273 19 6 7.8934 -7.3017 3.3736 20 1 8.0702 -6.2379 3.3160 21 6 8.8862 -8.1922 2.9886 22 7 8.6708 -9.4887 3.0592 23 14 10.5274 -7.5504 2.3689 24 1 11.4603 -7.3907 3.5131 25 1 11.0996 -8.5138 1.3943 26 1 10.3269 -6.2365 1.7066 27 6 4.8382 -6.3997 3.0038 28 7 1.7725 -1.9179 1.5035 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2076 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.4294 -4.0125 3.1803 39 1 2.4570 -3.3034 4.4489 40 1 2.2579 -6.9399 4.0772 41 1 2.1033 -5.3052 4.7709 42 1 2.9801 -6.9990 6.4185 43 1 4.1065 -5.6494 6.1372 44 1 5.2812 -7.8439 6.1018 45 1 4.2329 -8.3731 4.7643 46 1 6.5313 -8.7277 3.8794 47 1 9.3647 -10.1110 2.7906 48 1 4.4566 -7.2808 2.4878 49 1 5.4766 -5.8291 2.3294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999233305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:22 Heat of formation + Delta-G solvation = 99.226716 kcal Electronic energy + Delta-G solvation = -29516.256643 eV Core-core repulsion = 25516.805637 eV Total energy + Delta-G solvation = -3999.451006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.37963 -39.94805 -37.97525 -37.27706 -34.49597 -33.61173 -33.25597 -32.28734 -31.18316 -29.83895 -28.16501 -28.01895 -27.77417 -25.11491 -24.63766 -23.97151 -22.53516 -21.87879 -20.82906 -20.19375 -18.80755 -17.55489 -17.27409 -17.07116 -16.76842 -15.82562 -15.42237 -14.91514 -14.65998 -14.59951 -14.30758 -14.16201 -13.91305 -13.76148 -13.52754 -13.32765 -13.27550 -12.96869 -12.89790 -12.79540 -12.48132 -12.36627 -12.32167 -12.10752 -11.95096 -11.92980 -11.49295 -11.34262 -11.02502 -10.93833 -10.85913 -10.82568 -10.65504 -10.56786 -10.29040 -10.18221 -9.80764 -9.73401 -9.50223 -9.05435 -8.34035 -6.98089 -5.76989 -3.06528 1.22545 1.72304 2.11391 2.78037 3.20444 3.46658 3.51926 3.55006 3.66853 3.96250 4.07100 4.17624 4.43549 4.56630 4.60984 4.88747 4.91516 4.94220 5.01761 5.04339 5.08338 5.10301 5.17982 5.18922 5.26237 5.33443 5.46159 5.48909 5.51912 5.56828 5.61475 5.65904 5.70704 5.80976 5.85948 5.94107 6.05303 6.17381 6.18578 6.22860 6.36881 6.50896 6.73993 6.85229 7.02810 7.63308 7.74390 8.35667 8.37539 8.41832 9.53295 10.07199 10.42450 11.45297 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.002614 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.618257 B =10710.245576 C =12097.423806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 C -0.153 4.153 4 C -0.160 4.160 5 N -0.131 5.131 6 N -0.063 5.063 7 N -0.276 5.276 8 C 0.188 3.812 9 C -0.043 4.043 10 C 0.517 3.483 11 O -0.533 6.533 12 N -0.604 5.604 13 C 0.105 3.895 14 C -0.131 4.131 15 C -0.126 4.126 16 C 0.168 3.832 17 H 0.051 0.949 18 N -0.718 5.718 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.011 4.011 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.094 3.906 28 N -0.296 5.296 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.061 0.939 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.189 16.918 -2.270 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.098 3.902 3 C -0.211 4.211 4 C -0.218 4.218 5 N -0.045 5.045 6 N -0.056 5.056 7 N -0.147 5.147 8 C -0.095 4.095 9 C -0.086 4.086 10 C 0.303 3.697 11 O -0.409 6.409 12 N -0.338 5.338 13 C -0.018 4.018 14 C -0.170 4.170 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.069 0.931 18 N -0.359 5.359 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.030 4.030 28 N -0.146 5.146 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.462 17.877 -2.944 28.858 hybrid contribution 0.801 -0.665 -0.263 1.074 sum -21.661 17.212 -3.207 27.852 Atomic orbital electron populations 1.22219 0.90978 1.04460 1.03872 1.21356 0.95977 0.93008 0.79843 1.22083 1.03347 0.91543 1.04096 1.22238 1.02780 1.01940 0.94855 1.50394 1.30409 1.05596 1.18080 1.78889 1.08712 1.22494 0.95496 1.75811 1.19807 0.98887 1.20148 1.24628 0.96367 0.96947 0.91578 1.19928 1.00322 0.87754 1.00637 1.20067 0.85762 0.81683 0.82215 1.90744 1.46701 1.71352 1.32152 1.48227 1.29764 1.15922 1.39919 1.21789 0.91999 0.99381 0.88648 1.21893 0.98107 1.00199 0.96766 1.21827 0.96696 0.97975 0.99967 1.20505 0.88696 0.93620 0.91501 0.93053 1.42374 1.11325 1.04671 1.77492 1.19278 0.90394 0.92190 1.35372 0.91060 1.24739 0.98601 0.95273 1.02092 1.69660 1.33919 1.00357 1.54147 0.86196 0.84035 0.77774 0.78299 1.21650 1.21742 1.20610 1.22801 0.86681 0.93416 1.00128 1.74517 1.24612 0.99323 1.16171 0.91488 0.89250 0.90436 0.90518 0.89342 0.90654 0.90369 0.89302 0.91198 0.86247 0.85797 0.91136 0.90244 0.90899 0.91412 0.91375 0.92022 0.78072 0.93491 0.92027 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 8.66 37.16 0.32 -0.56 16 2 C 0.18 1.43 1.30 -131.82 -0.17 1.26 16 3 C -0.15 -0.94 7.91 37.16 0.29 -0.65 16 4 C -0.16 -1.19 8.66 37.16 0.32 -0.87 16 5 N -0.13 -1.64 3.73 0.48 0.00 -1.64 16 6 N -0.06 -0.93 12.24 60.35 0.74 -0.19 16 7 N -0.28 -4.44 12.50 32.44 0.41 -4.04 16 8 C 0.19 2.75 6.86 -156.62 -1.07 1.67 16 9 C -0.04 -0.51 4.67 -29.04 -0.14 -0.64 16 10 C 0.52 8.38 7.69 -10.99 -0.08 8.29 16 11 O -0.53 -11.34 15.45 5.55 0.09 -11.25 16 12 N -0.60 -9.13 2.97 -172.75 -0.51 -9.64 16 13 C 0.10 1.10 6.34 -3.71 -0.02 1.08 16 14 C -0.13 -1.47 6.08 -26.61 -0.16 -1.64 16 15 C -0.13 -1.94 5.35 -26.69 -0.14 -2.08 16 16 C 0.17 3.35 2.92 -67.80 -0.20 3.15 16 17 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 18 N -0.72 -17.99 5.12 -53.29 -0.27 -18.26 16 19 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 20 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 23 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 27 C 0.09 1.80 6.02 -3.69 -0.02 1.77 16 28 N -0.30 -4.12 11.83 32.46 0.38 -3.73 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.12 1.01 7.94 -51.93 -0.41 0.59 16 39 H 0.12 1.13 7.69 -51.93 -0.40 0.73 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.39 10.10 7.80 -40.82 -0.32 9.78 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.09 2.05 7.00 -51.93 -0.36 1.69 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -36.91 398.39 -6.90 -43.81 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.11 Total: 5.08 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.32 Total: 3.38 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: 1.47 Total: -65.04 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.91 -6.90 -43.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999233305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.034 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds