Wall clock time and date at job start Tue Mar 31 2020 19:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47188 * 2 1 4 4 C 1.52998 * 109.46570 * 240.00555 * 2 1 3 5 5 N 1.46494 * 109.47651 * 120.00565 * 2 1 3 6 6 N 1.28776 * 125.44857 * 240.00153 * 5 2 1 7 7 N 1.29000 * 108.72632 * 179.72280 * 6 5 2 8 8 C 1.33317 * 107.35559 * 0.42949 * 7 6 5 9 9 C 1.50689 * 126.55106 * 179.83713 * 8 7 6 10 10 C 1.50705 * 109.47010 * 269.68672 * 9 8 7 11 11 O 1.21275 * 119.99983 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99968 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63015 * 359.97438 * 12 10 9 14 14 C 1.53197 * 108.77500 * 126.41163 * 13 12 10 15 15 C 1.53036 * 109.31163 * 54.63555 * 14 13 12 16 16 C 1.53045 * 109.53904 * 298.63062 * 15 14 13 17 17 H 1.08997 * 109.52129 * 301.40465 * 16 15 14 18 18 N 1.46493 * 109.49861 * 181.31693 * 16 15 14 19 19 C 1.36945 * 119.99892 * 155.16163 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47151 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47196 * 120.00214 * 23 21 19 26 26 H 1.48500 * 109.46879 * 240.00070 * 23 21 19 27 27 C 1.46928 * 120.62939 * 180.02562 * 12 10 9 28 28 N 1.28883 * 125.44929 * 59.99082 * 5 2 1 29 29 H 1.09000 * 109.46708 * 299.99529 * 1 2 3 30 30 H 1.08997 * 109.47281 * 59.99444 * 1 2 3 31 31 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47146 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46951 * 300.00545 * 3 2 1 34 34 H 1.08997 * 109.46490 * 60.00327 * 3 2 1 35 35 H 1.09004 * 109.47473 * 299.99284 * 4 2 1 36 36 H 1.09003 * 109.47686 * 60.00212 * 4 2 1 37 37 H 1.09011 * 109.47051 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47014 * 149.69167 * 9 8 7 39 39 H 1.09000 * 109.47558 * 29.68341 * 9 8 7 40 40 H 1.09003 * 109.58630 * 246.19528 * 13 12 10 41 41 H 1.08996 * 109.59193 * 6.62362 * 13 12 10 42 42 H 1.08998 * 109.49332 * 174.58233 * 14 13 12 43 43 H 1.08995 * 109.49626 * 294.65043 * 14 13 12 44 44 H 1.09002 * 109.45549 * 178.61382 * 15 14 13 45 45 H 1.08992 * 109.46447 * 58.65358 * 15 14 13 46 46 H 0.97000 * 120.00738 * 334.89628 * 18 16 15 47 47 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58560 * 113.80345 * 27 12 10 49 49 H 1.08997 * 109.58754 * 353.37283 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 2.0184 -0.6907 1.1960 6 7 2.7620 -0.1686 2.1087 7 7 2.9941 -1.0587 3.0131 8 6 2.3753 -2.1782 2.6374 9 6 2.3655 -3.4901 3.3786 10 6 3.5223 -4.3376 2.9151 11 8 4.2803 -3.9174 2.0669 12 7 3.7150 -5.5622 3.4441 13 6 2.8062 -6.0844 4.4737 14 6 2.2850 -7.4528 4.0234 15 6 3.4710 -8.3676 3.7093 16 6 4.2942 -7.7650 2.5685 17 1 3.6624 -7.6420 1.6889 18 7 5.4112 -8.6569 2.2475 19 6 5.9714 -8.6302 0.9982 20 1 5.5868 -7.9548 0.2483 21 6 7.0335 -9.4713 0.6957 22 7 7.5017 -10.2947 1.6095 23 14 7.7981 -9.4343 -1.0083 24 1 7.0942 -8.4295 -1.8450 25 1 9.2335 -9.0701 -0.8989 26 1 7.6739 -10.7746 -1.6356 27 6 4.8385 -6.3999 3.0029 28 7 1.7726 -1.9180 1.5032 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6765 -0.2072 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 1.4297 -4.0127 3.1798 39 1 2.4575 -3.3037 4.4486 40 1 3.3438 -6.1902 5.4160 41 1 1.9686 -5.3991 4.6035 42 1 1.6862 -7.8941 4.8200 43 1 1.6713 -7.3325 3.1307 44 1 3.1031 -9.3498 3.4122 45 1 4.0973 -8.4675 4.5957 46 1 5.7565 -9.2636 2.9209 47 1 8.2437 -10.8826 1.3979 48 1 5.5414 -6.5313 3.8255 49 1 5.3419 -5.9227 2.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999233306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:26 Heat of formation + Delta-G solvation = 98.958263 kcal Electronic energy + Delta-G solvation = -29587.228898 eV Core-core repulsion = 25587.766251 eV Total energy + Delta-G solvation = -3999.462647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.37931 -39.95004 -37.96505 -37.28195 -34.50436 -33.61062 -33.25325 -32.29544 -31.19272 -29.83849 -28.16499 -27.99646 -27.77017 -25.11698 -24.63340 -23.98384 -22.53584 -21.88898 -20.81334 -20.21317 -18.80577 -17.55446 -17.25570 -17.08321 -16.76478 -15.83977 -15.47009 -14.79324 -14.66610 -14.58743 -14.32466 -14.19274 -13.98466 -13.73770 -13.48137 -13.35308 -13.28736 -12.93652 -12.90344 -12.79045 -12.47954 -12.33491 -12.30429 -12.16989 -11.92677 -11.91626 -11.48395 -11.35325 -11.03843 -10.93655 -10.85786 -10.85080 -10.66582 -10.57953 -10.28815 -10.16837 -9.81389 -9.74827 -9.50718 -9.07011 -8.34341 -6.99156 -5.78363 -3.07912 1.23016 1.73018 2.11168 2.78210 3.20313 3.44748 3.51142 3.53494 3.67886 3.96223 4.08622 4.19274 4.44082 4.56290 4.59819 4.89321 4.92008 4.95901 5.03234 5.05106 5.07704 5.11434 5.19106 5.21127 5.25373 5.33762 5.47537 5.48091 5.51613 5.56620 5.62828 5.66920 5.71775 5.79795 5.86441 5.93436 6.04439 6.17089 6.18388 6.21717 6.36058 6.50069 6.73328 6.84144 7.01826 7.63225 7.72966 8.35532 8.37539 8.40592 9.51934 10.05973 10.41134 11.43995 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.002755 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.862165 B =10161.488989 C =11676.537087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 C -0.152 4.152 4 C -0.160 4.160 5 N -0.130 5.130 6 N -0.064 5.064 7 N -0.277 5.277 8 C 0.188 3.812 9 C -0.043 4.043 10 C 0.518 3.482 11 O -0.533 6.533 12 N -0.604 5.604 13 C 0.105 3.895 14 C -0.130 4.130 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.051 0.949 18 N -0.718 5.718 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.094 3.906 28 N -0.294 5.294 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.062 0.938 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.230 19.661 2.658 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.098 3.902 3 C -0.210 4.210 4 C -0.219 4.219 5 N -0.044 5.044 6 N -0.057 5.057 7 N -0.148 5.148 8 C -0.096 4.096 9 C -0.086 4.086 10 C 0.303 3.697 11 O -0.409 6.409 12 N -0.338 5.338 13 C -0.018 4.018 14 C -0.169 4.169 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.069 0.931 18 N -0.359 5.359 19 C -0.372 4.372 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.031 4.031 28 N -0.144 5.144 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.619 20.547 1.851 27.790 hybrid contribution 0.597 -0.813 -0.532 1.141 sum -18.022 19.734 1.319 26.757 Atomic orbital electron populations 1.22220 0.90959 1.04508 1.03857 1.21364 0.95997 0.92983 0.79851 1.22083 1.03313 0.91555 1.04086 1.22245 1.02774 1.02014 0.94821 1.50395 1.30369 1.05594 1.18066 1.78868 1.08773 1.22499 0.95519 1.75788 1.19938 0.98901 1.20208 1.24627 0.96404 0.96924 0.91603 1.19930 1.00437 0.87733 1.00541 1.20067 0.85766 0.81765 0.82122 1.90740 1.46811 1.71445 1.31946 1.48228 1.29953 1.15574 1.40085 1.21794 0.93050 0.95906 0.91095 1.21887 0.98417 0.94958 1.01648 1.21824 0.96315 0.98917 0.99425 1.20507 0.89937 0.88747 0.95072 0.93142 1.42390 1.36848 1.43546 1.13095 1.19313 1.11112 1.17468 0.89310 0.91045 1.24742 0.99011 0.98991 0.97974 1.69672 1.28663 1.26676 1.32991 0.86126 0.79065 0.77180 0.83926 1.20472 1.21775 1.21832 1.22813 0.87403 0.92379 1.00485 1.74540 1.24515 0.99262 1.16113 0.91508 0.89235 0.90393 0.90543 0.89335 0.90679 0.90296 0.89283 0.91204 0.86157 0.85890 0.91068 0.90247 0.90897 0.91516 0.91395 0.91976 0.78060 0.93519 0.91958 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.66 37.16 0.32 -0.60 16 2 C 0.18 1.47 1.30 -131.82 -0.17 1.30 16 3 C -0.15 -0.95 7.91 37.16 0.29 -0.66 16 4 C -0.16 -1.26 8.66 37.16 0.32 -0.94 16 5 N -0.13 -1.64 3.73 0.48 0.00 -1.64 16 6 N -0.06 -0.93 12.24 60.35 0.74 -0.19 16 7 N -0.28 -4.41 12.50 32.44 0.41 -4.00 16 8 C 0.19 2.74 6.86 -156.62 -1.07 1.67 16 9 C -0.04 -0.51 4.67 -29.04 -0.14 -0.64 16 10 C 0.52 8.38 7.69 -10.98 -0.08 8.29 16 11 O -0.53 -11.34 15.45 5.56 0.09 -11.25 16 12 N -0.60 -9.13 2.97 -172.73 -0.51 -9.64 16 13 C 0.10 1.10 6.34 -3.71 -0.02 1.07 16 14 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 15 C -0.13 -1.93 5.35 -26.69 -0.14 -2.07 16 16 C 0.17 3.33 2.92 -67.78 -0.20 3.13 16 17 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 18 N -0.72 -17.90 5.12 -53.28 -0.27 -18.17 16 19 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 23 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 C 0.09 1.79 6.02 -3.68 -0.02 1.76 16 28 N -0.29 -4.16 11.83 32.46 0.38 -3.77 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.12 1.05 7.69 -51.93 -0.40 0.65 16 39 H 0.12 1.09 7.94 -51.93 -0.41 0.67 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.39 10.07 7.80 -40.82 -0.32 9.75 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 49 H 0.09 2.04 7.01 -51.93 -0.36 1.68 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -36.74 398.40 -6.90 -43.63 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.11 Total: 5.25 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.32 Total: 3.35 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: 1.47 Total: -64.87 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.74 -6.90 -43.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999233306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.590 kcal (2) G-P(sol) polarization free energy of solvation -36.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds