Wall clock time and date at job start Tue Mar 31 2020 19:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47188 * 2 1 4 4 C 1.52998 * 109.46570 * 240.00555 * 2 1 3 5 5 N 1.46494 * 109.47651 * 120.00565 * 2 1 3 6 6 N 1.28776 * 125.44857 * 240.00153 * 5 2 1 7 7 N 1.29000 * 108.72632 * 179.72280 * 6 5 2 8 8 C 1.33317 * 107.35559 * 0.42949 * 7 6 5 9 9 C 1.50689 * 126.55106 * 179.83713 * 8 7 6 10 10 C 1.50705 * 109.47010 * 269.68672 * 9 8 7 11 11 O 1.21275 * 119.99983 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99968 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63015 * 359.97438 * 12 10 9 14 14 C 1.53197 * 108.77500 * 126.41163 * 13 12 10 15 15 C 1.53036 * 109.31163 * 54.63555 * 14 13 12 16 16 C 1.53045 * 109.53904 * 298.63062 * 15 14 13 17 17 H 1.08997 * 109.52129 * 301.40465 * 16 15 14 18 18 N 1.46493 * 109.49861 * 181.31693 * 16 15 14 19 19 C 1.36945 * 119.99892 * 155.16163 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47151 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47196 * 120.00214 * 23 21 19 26 26 H 1.48500 * 109.46879 * 240.00070 * 23 21 19 27 27 C 1.46928 * 120.62939 * 180.02562 * 12 10 9 28 28 N 1.28883 * 125.44929 * 59.99082 * 5 2 1 29 29 H 1.09000 * 109.46708 * 299.99529 * 1 2 3 30 30 H 1.08997 * 109.47281 * 59.99444 * 1 2 3 31 31 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47146 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46951 * 300.00545 * 3 2 1 34 34 H 1.08997 * 109.46490 * 60.00327 * 3 2 1 35 35 H 1.09004 * 109.47473 * 299.99284 * 4 2 1 36 36 H 1.09003 * 109.47686 * 60.00212 * 4 2 1 37 37 H 1.09011 * 109.47051 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47014 * 149.69167 * 9 8 7 39 39 H 1.09000 * 109.47558 * 29.68341 * 9 8 7 40 40 H 1.09003 * 109.58630 * 246.19528 * 13 12 10 41 41 H 1.08996 * 109.59193 * 6.62362 * 13 12 10 42 42 H 1.08998 * 109.49332 * 174.58233 * 14 13 12 43 43 H 1.08995 * 109.49626 * 294.65043 * 14 13 12 44 44 H 1.09002 * 109.45549 * 178.61382 * 15 14 13 45 45 H 1.08992 * 109.46447 * 58.65358 * 15 14 13 46 46 H 0.97000 * 120.00738 * 334.89628 * 18 16 15 47 47 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58560 * 113.80345 * 27 12 10 49 49 H 1.08997 * 109.58754 * 353.37283 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 2.0184 -0.6907 1.1960 6 7 2.7620 -0.1686 2.1087 7 7 2.9941 -1.0587 3.0131 8 6 2.3753 -2.1782 2.6374 9 6 2.3655 -3.4901 3.3786 10 6 3.5223 -4.3376 2.9151 11 8 4.2803 -3.9174 2.0669 12 7 3.7150 -5.5622 3.4441 13 6 2.8062 -6.0844 4.4737 14 6 2.2850 -7.4528 4.0234 15 6 3.4710 -8.3676 3.7093 16 6 4.2942 -7.7650 2.5685 17 1 3.6624 -7.6420 1.6889 18 7 5.4112 -8.6569 2.2475 19 6 5.9714 -8.6302 0.9982 20 1 5.5868 -7.9548 0.2483 21 6 7.0335 -9.4713 0.6957 22 7 7.5017 -10.2947 1.6095 23 14 7.7981 -9.4343 -1.0083 24 1 7.0942 -8.4295 -1.8450 25 1 9.2335 -9.0701 -0.8989 26 1 7.6739 -10.7746 -1.6356 27 6 4.8385 -6.3999 3.0029 28 7 1.7726 -1.9180 1.5032 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6765 -0.2072 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 1.4297 -4.0127 3.1798 39 1 2.4575 -3.3037 4.4486 40 1 3.3438 -6.1902 5.4160 41 1 1.9686 -5.3991 4.6035 42 1 1.6862 -7.8941 4.8200 43 1 1.6713 -7.3325 3.1307 44 1 3.1031 -9.3498 3.4122 45 1 4.0973 -8.4675 4.5957 46 1 5.7565 -9.2636 2.9209 47 1 8.2437 -10.8826 1.3979 48 1 5.5414 -6.5313 3.8255 49 1 5.3419 -5.9227 2.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999233306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:25 Heat of formation + Delta-G solvation = 72.036633 kcal Electronic energy + Delta-G solvation = -29588.396307 eV Core-core repulsion = 25587.766251 eV Total energy + Delta-G solvation = -4000.630057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.39398 -41.22820 -38.86335 -38.49084 -36.23630 -34.69737 -34.26797 -33.82745 -32.71742 -31.06230 -29.60651 -28.54249 -28.42830 -26.36099 -25.88354 -25.60535 -23.66097 -23.21599 -21.75463 -21.53609 -20.05401 -19.14010 -18.63506 -18.03795 -17.86395 -17.01580 -16.89044 -16.43441 -15.64447 -15.62223 -15.38899 -15.28921 -15.21608 -15.17305 -14.73821 -14.64478 -14.24844 -13.96178 -13.90469 -13.64702 -13.45731 -13.24728 -13.19606 -13.10629 -12.94113 -12.87703 -12.85489 -12.58036 -12.49859 -12.20098 -12.17664 -12.00969 -11.95964 -11.87391 -11.85480 -11.66713 -11.35129 -11.31970 -11.12990 -10.76209 -9.75208 -9.02815 -8.01378 -5.30127 0.20962 0.91096 1.04184 1.40928 1.42492 1.52218 1.55739 2.02874 2.50863 2.78580 3.14306 3.31903 3.49713 3.51820 3.58891 3.66157 3.79367 4.02812 4.10074 4.16410 4.24730 4.36375 4.38004 4.41420 4.43926 4.49964 4.51290 4.58908 4.61333 4.69598 4.70184 4.71628 4.76516 4.80919 4.90849 4.95009 4.99986 5.08788 5.09712 5.19617 5.20699 5.34641 5.39612 5.43461 5.50848 5.58248 6.22134 6.43249 7.12204 7.28465 7.32575 8.01549 8.26345 9.21493 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.002755 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.862165 B =10161.488989 C =11676.537087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 C -0.148 4.148 4 C -0.157 4.157 5 N -0.120 5.120 6 N -0.079 5.079 7 N -0.308 5.308 8 C 0.173 3.827 9 C -0.033 4.033 10 C 0.512 3.488 11 O -0.596 6.596 12 N -0.600 5.600 13 C 0.096 3.904 14 C -0.122 4.122 15 C -0.119 4.119 16 C 0.168 3.832 17 H 0.031 0.969 18 N -0.730 5.730 19 C -0.243 4.243 20 H 0.062 0.938 21 C -0.068 4.068 22 N -0.963 5.963 23 Si 0.967 3.033 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.109 3.891 28 N -0.306 5.306 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.128 0.872 37 H 0.045 0.955 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.378 0.622 47 H 0.253 0.747 48 H 0.058 0.942 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.350 20.849 3.259 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.083 3.917 3 C -0.206 4.206 4 C -0.216 4.216 5 N -0.036 5.036 6 N -0.071 5.071 7 N -0.178 5.178 8 C -0.110 4.110 9 C -0.075 4.075 10 C 0.300 3.700 11 O -0.477 6.477 12 N -0.333 5.333 13 C -0.024 4.024 14 C -0.160 4.160 15 C -0.158 4.158 16 C 0.058 3.942 17 H 0.049 0.951 18 N -0.370 5.370 19 C -0.375 4.375 20 H 0.080 0.920 21 C -0.261 4.261 22 N -0.613 5.613 23 Si 0.796 3.204 24 H -0.200 1.200 25 H -0.219 1.219 26 H -0.212 1.212 27 C -0.017 4.017 28 N -0.157 5.157 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.065 0.935 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.132 0.868 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.210 0.790 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.802 21.759 2.493 30.904 hybrid contribution 1.515 -1.117 -0.774 2.035 sum -20.287 20.642 1.719 28.994 Atomic orbital electron populations 1.22235 0.88699 1.04338 1.05555 1.21998 0.97749 0.93618 0.78382 1.22131 1.02201 0.90489 1.05814 1.22274 1.01261 1.01619 0.96406 1.50942 1.29020 1.05255 1.18357 1.78780 1.09516 1.22704 0.96076 1.75733 1.20998 0.99733 1.21371 1.25161 0.96230 0.97632 0.91939 1.20106 0.99534 0.85850 1.02027 1.20901 0.86196 0.81940 0.81008 1.90717 1.49317 1.72838 1.34854 1.48255 1.29354 1.14967 1.40690 1.22269 0.93731 0.96463 0.89968 1.21891 0.96615 0.94330 1.03163 1.21754 0.97385 0.99342 0.97287 1.20682 0.88643 0.88580 0.96307 0.95113 1.42536 1.38051 1.44488 1.11926 1.19521 1.10994 1.16557 0.90455 0.91957 1.25469 0.99878 0.99273 1.01457 1.69793 1.29269 1.27610 1.34624 0.85181 0.77894 0.77276 0.80081 1.20003 1.21864 1.21208 1.22206 0.88687 0.92197 0.98645 1.74507 1.25045 1.00023 1.16088 0.91548 0.85743 0.91462 0.92327 0.85653 0.90848 0.92032 0.85395 0.93539 0.82330 0.82218 0.89297 0.85503 0.86784 0.91522 0.92118 0.91487 0.78973 0.93793 0.92358 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.66 71.98 0.62 -0.80 16 2 C 0.16 2.46 1.30 3.61 0.00 2.47 16 3 C -0.15 -1.63 7.91 71.98 0.57 -1.06 16 4 C -0.16 -2.35 8.66 71.98 0.62 -1.73 16 5 N -0.12 -3.00 3.73 -152.39 -0.57 -3.57 16 6 N -0.08 -2.31 12.24 37.02 0.45 -1.85 16 7 N -0.31 -9.80 12.50 -51.27 -0.64 -10.44 16 8 C 0.17 4.93 6.86 138.55 0.95 5.88 16 9 C -0.03 -0.69 4.67 29.10 0.14 -0.55 16 10 C 0.51 16.27 7.69 87.66 0.67 16.94 16 11 O -0.60 -26.47 15.45 -3.02 -0.05 -26.51 16 12 N -0.60 -17.41 2.97 -818.78 -2.43 -19.85 16 13 C 0.10 1.61 6.34 86.36 0.55 2.16 16 14 C -0.12 -2.22 6.08 30.67 0.19 -2.03 16 15 C -0.12 -3.47 5.35 30.62 0.16 -3.31 16 16 C 0.17 6.77 2.92 45.09 0.13 6.90 16 17 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 18 N -0.73 -37.68 5.12 -322.48 -1.65 -39.33 16 19 C -0.24 -14.19 9.93 84.03 0.83 -13.35 16 20 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 22 N -0.96 -59.61 13.06 21.65 0.28 -59.32 16 23 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 24 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 C 0.11 4.28 6.02 86.38 0.52 4.80 16 28 N -0.31 -8.51 11.83 -51.21 -0.61 -9.11 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.13 0.42 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.16 2.05 7.69 -2.39 -0.02 2.03 16 39 H 0.16 2.13 7.94 -2.39 -0.02 2.11 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 41 H 0.13 1.02 5.93 -2.39 -0.01 1.00 16 42 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 46 H 0.38 20.39 7.80 -92.71 -0.72 19.67 16 47 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.04 2.03 7.01 -2.39 -0.02 2.01 16 Total: -1.00 -87.51 398.40 3.48 -84.03 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.23 Total: 22.95 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.43 Total: 12.74 kcal Atomic # 7 Polarization: -138.31 SS G_CDS: -5.16 Total: -143.48 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -87.51 3.48 -84.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999233306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.067 kcal (2) G-P(sol) polarization free energy of solvation -87.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds