Wall clock time and date at job start Tue Mar 31 2020 19:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99994 * 2 1 4 4 C 1.52995 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47330 * 180.02562 * 4 3 2 6 6 N 1.28442 * 125.18633 * 274.17774 * 5 4 3 7 7 C 1.30861 * 110.92754 * 180.16690 * 6 5 4 8 8 C 1.39676 * 107.86251 * 359.58780 * 7 6 5 9 9 C 1.36599 * 125.19495 * 93.88307 * 5 4 3 10 10 C 1.47167 * 126.87851 * 359.97438 * 9 5 4 11 11 O 1.21622 * 120.00217 * 354.67358 * 10 9 5 12 12 N 1.34775 * 119.99493 * 174.68255 * 10 9 5 13 13 C 1.46500 * 119.99891 * 184.70000 * 12 10 9 14 14 C 1.53000 * 109.47257 * 179.97438 * 13 12 10 15 15 C 1.53046 * 109.45772 * 295.02629 * 14 13 12 16 16 C 1.53195 * 109.30934 * 178.60052 * 15 14 13 17 17 N 1.46927 * 108.76324 * 54.65812 * 16 15 14 18 18 C 1.36942 * 120.62837 * 126.40839 * 17 16 15 19 19 H 1.07991 * 119.99945 * 328.56750 * 18 17 16 20 20 C 1.38816 * 119.99957 * 148.57422 * 18 17 16 21 21 N 1.31622 * 119.99798 * 349.35953 * 20 18 17 22 22 Si 1.86793 * 119.99903 * 169.35893 * 20 18 17 23 23 H 1.48504 * 109.47203 * 60.00143 * 22 20 18 24 24 H 1.48498 * 109.47202 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47589 * 300.00199 * 22 20 18 26 26 C 1.46923 * 118.74003 * 306.38006 * 17 16 15 27 27 C 1.53046 * 109.46047 * 174.97549 * 14 13 12 28 28 H 1.09004 * 109.47341 * 59.99182 * 1 2 3 29 29 H 1.08991 * 109.47302 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47185 * 300.00071 * 1 2 3 31 31 H 1.09003 * 109.47010 * 59.99857 * 3 2 1 32 32 H 1.08993 * 109.47117 * 300.00555 * 3 2 1 33 33 H 1.08998 * 109.46842 * 60.00314 * 4 3 2 34 34 H 1.09004 * 109.47237 * 300.00142 * 4 3 2 35 35 H 1.08001 * 126.07660 * 179.84901 * 7 6 5 36 36 H 1.07998 * 127.32864 * 180.26287 * 8 7 6 37 37 H 0.97001 * 120.00456 * 4.69561 * 12 10 9 38 38 H 1.08997 * 109.47273 * 299.99866 * 13 12 10 39 39 H 1.09004 * 109.46935 * 60.00074 * 13 12 10 40 40 H 1.08992 * 109.45957 * 55.00176 * 14 13 12 41 41 H 1.08994 * 109.50082 * 298.56450 * 15 14 13 42 42 H 1.08998 * 109.49532 * 58.66963 * 15 14 13 43 43 H 1.09002 * 109.59977 * 294.86908 * 16 15 14 44 44 H 1.08997 * 109.70019 * 174.50462 * 16 15 14 45 45 H 0.97000 * 119.99760 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.58984 * 293.82265 * 26 17 16 47 47 H 1.09006 * 109.70608 * 173.46972 * 26 17 16 48 48 H 1.08995 * 109.49499 * 301.33764 * 27 14 13 49 49 H 1.09004 * 109.49612 * 61.39752 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 7 4.3630 3.2306 -1.0454 7 6 4.9034 4.3782 -0.7237 8 6 5.0249 4.4196 0.6672 9 6 4.5201 3.2113 1.1153 10 6 4.4214 2.7587 2.5122 11 8 3.8655 1.7090 2.7736 12 7 4.9468 3.5077 3.5018 13 6 4.9403 3.0099 4.8796 14 6 5.5917 4.0449 5.7990 15 6 7.0691 4.1969 5.4297 16 6 7.7094 5.2591 6.3289 17 7 7.4729 4.8949 7.7325 18 6 8.5168 4.7985 8.6137 19 1 9.4900 4.4856 8.2656 20 6 8.3239 5.1028 9.9542 21 7 7.2073 5.6806 10.3438 22 14 9.6489 4.6922 11.2052 23 1 10.9018 5.4069 10.8518 24 1 9.2022 5.1160 12.5565 25 1 9.8965 3.2281 11.2018 26 6 6.0952 4.6368 8.1730 27 6 5.4729 3.5819 7.2529 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6437 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 5.1988 5.1570 -1.4111 36 1 5.4268 5.2236 1.2658 37 1 5.3294 4.3764 3.3019 38 1 3.9126 2.8360 5.1983 39 1 5.4996 2.0757 4.9310 40 1 5.0873 5.0039 5.6810 41 1 7.5794 3.2443 5.5714 42 1 7.1537 4.5040 4.3873 43 1 7.2610 6.2310 6.1230 44 1 8.7817 5.3036 6.1386 45 1 7.0726 5.8936 11.2805 46 1 5.5152 5.5580 8.1175 47 1 6.1002 4.2695 9.1993 48 1 4.4214 3.4512 7.5083 49 1 5.9979 2.6348 7.3771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001513462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:47 Heat of formation + Delta-G solvation = -8.310682 kcal Electronic energy + Delta-G solvation = -29020.062204 eV Core-core repulsion = 24983.655275 eV Total energy + Delta-G solvation = -4036.406929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.59942 -40.66926 -39.27615 -39.06502 -36.50839 -35.05356 -34.42524 -32.77129 -31.82940 -31.27539 -30.36306 -28.44409 -27.30713 -25.99615 -24.74146 -24.09759 -23.63778 -22.80525 -22.10121 -21.13571 -20.57794 -19.19923 -18.60752 -17.81683 -17.30385 -17.18117 -16.98930 -16.80818 -16.45911 -16.18606 -15.69915 -15.58553 -15.41103 -15.25883 -15.02065 -14.83623 -14.64399 -14.49586 -14.01076 -13.95667 -13.77130 -13.41419 -13.14727 -12.96404 -12.77597 -12.62998 -12.55705 -12.38255 -12.28304 -12.00433 -11.86530 -11.81974 -11.60302 -11.33743 -11.09308 -11.06028 -10.84258 -10.52044 -10.43049 -10.14084 -10.00023 -8.58360 -7.84387 -5.34617 0.15283 1.16686 1.47626 1.49293 1.55835 1.61555 2.03356 2.14974 2.52230 2.86107 3.30758 3.45983 3.52709 3.75064 3.75955 3.85343 3.94410 3.96604 4.08478 4.10931 4.14182 4.40124 4.41403 4.51444 4.53732 4.54772 4.57982 4.65657 4.71871 4.76163 4.77274 4.82811 4.87140 4.97675 5.05897 5.16493 5.29063 5.32314 5.35333 5.47016 5.50731 5.59349 5.65661 5.68593 5.84088 5.96649 6.38188 6.44815 6.97988 7.06846 7.19622 7.91009 8.42058 9.20750 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002089 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.270096 B =13402.644789 C =14266.304100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.066 3.934 4 C 0.120 3.880 5 N -0.267 5.267 6 N -0.298 5.298 7 C 0.002 3.998 8 C -0.171 4.171 9 C -0.057 4.057 10 C 0.586 3.414 11 O -0.573 6.573 12 N -0.695 5.695 13 C 0.139 3.861 14 C -0.078 4.078 15 C -0.115 4.115 16 C 0.139 3.861 17 N -0.613 5.613 18 C -0.261 4.261 19 H 0.063 0.937 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.279 1.279 26 C 0.178 3.822 27 C -0.123 4.123 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.221 0.779 36 H 0.194 0.806 37 H 0.417 0.583 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.050 0.950 45 H 0.249 0.751 46 H -0.001 1.001 47 H 0.050 0.950 48 H 0.069 0.931 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 -4.421 -23.808 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.012 4.012 4 C -0.001 4.001 5 N -0.056 5.056 6 N -0.129 5.129 7 C -0.174 4.174 8 C -0.200 4.200 9 C -0.184 4.184 10 C 0.372 3.628 11 O -0.453 6.453 12 N -0.346 5.346 13 C 0.015 3.985 14 C -0.097 4.097 15 C -0.154 4.154 16 C 0.014 3.986 17 N -0.337 5.337 18 C -0.392 4.392 19 H 0.081 0.919 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.205 1.205 26 C 0.052 3.948 27 C -0.162 4.162 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.238 0.762 36 H 0.211 0.789 37 H 0.255 0.745 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.038 0.962 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.017 0.983 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.819 -6.078 -24.349 27.329 hybrid contribution 0.788 0.984 1.815 2.210 sum -10.031 -5.093 -22.534 25.186 Atomic orbital electron populations 1.22994 0.78532 1.04453 1.00936 1.87770 1.22200 1.26729 1.95619 1.22495 0.92237 0.85611 1.00893 1.21802 0.92878 0.78463 1.06911 1.45553 1.43203 1.14575 1.02220 1.73226 1.18917 1.06847 1.13955 1.24261 1.01774 0.95625 0.95745 1.22758 1.04264 0.96896 0.96081 1.21526 1.11168 0.96511 0.89216 1.17118 0.78334 0.83574 0.83772 1.90795 1.44990 1.25000 1.84520 1.45590 1.60076 1.22077 1.06899 1.21366 1.00905 0.97033 0.79186 1.21151 0.96247 0.98436 0.93817 1.21945 0.94720 0.99429 0.99310 1.21087 0.98308 0.95112 0.84077 1.44291 1.03224 1.80104 1.06050 1.19449 0.91864 1.37924 0.89950 0.91937 1.25891 0.99425 0.98996 1.00310 1.70124 1.27370 1.45209 1.15460 0.85362 0.79121 0.78036 0.78028 1.20113 1.22086 1.20532 1.20562 0.83791 0.93692 0.96747 1.21986 1.00169 0.99178 0.94887 0.92541 0.87572 0.93711 0.93724 0.91791 0.86562 0.87153 0.76220 0.78906 0.74512 0.91411 0.92022 0.90184 0.93177 0.89486 0.96233 0.93105 0.94170 0.98338 0.93109 0.91290 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -8.28 10.70 -148.98 -1.59 -9.88 16 3 C 0.07 1.30 6.26 71.98 0.45 1.75 16 4 C 0.12 2.48 6.22 86.38 0.54 3.02 16 5 N -0.27 -5.75 3.35 -334.69 -1.12 -6.87 16 6 N -0.30 -6.03 11.90 -57.14 -0.68 -6.71 16 7 C 0.00 0.03 12.03 85.18 1.02 1.05 16 8 C -0.17 -2.52 10.50 22.66 0.24 -2.28 16 9 C -0.06 -1.18 6.96 40.79 0.28 -0.90 16 10 C 0.59 14.06 7.79 86.59 0.67 14.74 16 11 O -0.57 -17.43 14.68 -4.10 -0.06 -17.49 16 12 N -0.69 -14.02 5.26 -466.63 -2.45 -16.47 16 13 C 0.14 3.33 5.07 86.38 0.44 3.77 16 14 C -0.08 -2.12 2.19 -10.76 -0.02 -2.14 16 15 C -0.12 -3.28 5.25 30.67 0.16 -3.12 16 16 C 0.14 5.30 6.52 86.36 0.56 5.86 16 17 N -0.61 -29.76 2.99 -699.10 -2.09 -31.85 16 18 C -0.26 -14.18 9.58 84.03 0.81 -13.38 16 19 H 0.06 3.31 7.85 -2.92 -0.02 3.29 16 20 C -0.05 -2.82 5.05 84.86 0.43 -2.39 16 21 N -0.94 -54.80 11.05 21.65 0.24 -54.56 16 22 Si 0.97 44.63 29.57 68.60 2.03 46.66 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.18 8.27 5.25 86.36 0.45 8.73 16 27 C -0.12 -4.27 5.36 30.67 0.16 -4.10 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 2.65 6.21 -2.38 -0.01 2.63 16 35 H 0.22 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.19 1.51 7.58 -2.91 -0.02 1.49 16 37 H 0.42 6.17 6.68 -92.71 -0.62 5.55 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.82 7.15 -2.39 -0.02 1.80 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 45 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 46 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.05 2.74 6.11 -2.38 -0.01 2.72 16 48 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -71.27 395.73 2.04 -69.22 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.32 Total: 15.74 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 7.45 Total: 12.21 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -6.10 Total: -116.47 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -1.65 Total: -27.37 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -71.27 2.04 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001513462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.913 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds