Wall clock time and date at job start Tue Mar 31 2020 19:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.50703 * 109.46912 * 120.00132 * 2 1 3 5 5 N 1.31072 * 126.65845 * 300.04062 * 4 2 1 6 6 N 1.28845 * 107.99288 * 179.97438 * 5 4 2 7 7 N 1.28737 * 109.39255 * 359.73469 * 6 5 4 8 8 N 1.29024 * 108.80959 * 0.43681 * 7 6 5 9 9 C 1.46500 * 126.43536 * 179.83242 * 8 7 6 10 10 C 1.50691 * 109.47504 * 269.68665 * 9 8 7 11 11 O 1.21280 * 120.00210 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00339 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99813 * 0.02562 * 12 10 9 14 14 C 1.46495 * 120.00350 * 180.02562 * 12 10 9 15 15 C 1.53039 * 109.46476 * 240.00071 * 14 12 10 16 16 C 1.53192 * 109.31624 * 178.61195 * 15 14 12 17 17 N 1.46925 * 108.89163 * 54.56131 * 16 15 14 18 18 C 1.36940 * 120.62821 * 126.46045 * 17 16 15 19 19 H 1.08000 * 119.99751 * 331.92858 * 18 17 16 20 20 C 1.38810 * 120.00078 * 151.92771 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17980 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.18147 * 20 18 17 23 23 H 1.48509 * 109.47304 * 59.99932 * 22 20 18 24 24 H 1.48501 * 109.47440 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47535 * 299.99868 * 22 20 18 26 26 C 1.46954 * 118.71946 * 306.64559 * 17 16 15 27 27 C 1.53044 * 109.46278 * 119.92820 * 14 12 10 28 28 H 1.09005 * 109.46878 * 300.00360 * 1 2 3 29 29 H 1.08993 * 109.46708 * 59.99694 * 1 2 3 30 30 H 1.08993 * 109.47495 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47064 * 239.99375 * 2 1 3 32 32 H 1.09002 * 109.46880 * 59.99949 * 3 2 1 33 33 H 1.08997 * 109.46888 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.46872 * 300.00391 * 3 2 1 35 35 H 1.09010 * 109.46846 * 149.68607 * 9 8 7 36 36 H 1.08998 * 109.47101 * 29.69470 * 9 8 7 37 37 H 1.08998 * 109.46749 * 269.99919 * 13 12 10 38 38 H 1.08997 * 109.46972 * 29.99702 * 13 12 10 39 39 H 1.08997 * 109.46923 * 150.00230 * 13 12 10 40 40 H 1.09009 * 109.46016 * 359.97438 * 14 12 10 41 41 H 1.09005 * 109.49298 * 58.66180 * 15 14 12 42 42 H 1.08998 * 109.49763 * 298.56780 * 15 14 12 43 43 H 1.08997 * 109.58838 * 174.42439 * 16 15 14 44 44 H 1.09002 * 109.58672 * 294.71002 * 16 15 14 45 45 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47125 * 293.56762 * 26 17 16 47 47 H 1.09000 * 109.71403 * 173.28134 * 26 17 16 48 48 H 1.09000 * 109.50000 * 301.34377 * 27 14 12 49 49 H 1.09003 * 109.49095 * 61.43586 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7969 -0.3788 2.4765 6 7 2.3979 -1.2293 3.2351 7 7 3.0061 -2.0981 2.5052 8 7 2.8093 -1.8090 1.2633 9 6 3.3288 -2.5422 0.1063 10 6 4.6668 -1.9732 -0.2896 11 8 5.1402 -1.0467 0.3335 12 7 5.3376 -2.4939 -1.3363 13 6 4.7656 -3.6128 -2.0894 14 6 6.6385 -1.9411 -1.7209 15 6 6.5668 -1.4210 -3.1584 16 6 7.9185 -0.8125 -3.5452 17 7 8.9723 -1.8104 -3.3165 18 6 9.8441 -2.1465 -4.3177 19 1 9.5374 -2.0664 -5.3501 20 6 11.1219 -2.5900 -4.0056 21 7 11.6154 -2.3815 -2.8034 22 14 12.1408 -3.4826 -5.2917 23 1 12.3456 -2.5949 -6.4646 24 1 13.4583 -3.8489 -4.7128 25 1 11.4288 -4.7132 -5.7208 26 6 9.0701 -2.4437 -1.9940 27 6 7.7056 -3.0340 -1.6246 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4423 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 2.6325 -2.4469 -0.7269 36 1 3.4438 -3.5948 0.3650 37 1 5.0919 -4.5536 -1.6462 38 1 3.6777 -3.5540 -2.0572 39 1 5.1017 -3.5632 -3.1251 40 1 6.8973 -1.1213 -1.0506 41 1 5.7907 -0.6592 -3.2313 42 1 6.3327 -2.2452 -3.8322 43 1 7.9045 -0.5305 -4.5979 44 1 8.1109 0.0688 -2.9333 45 1 12.5085 -2.6911 -2.5854 46 1 9.3577 -1.6970 -1.2539 47 1 9.8164 -3.2377 -2.0209 48 1 7.7399 -3.4202 -0.6059 49 1 7.4607 -3.8430 -2.3128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006097779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:06 Heat of formation + Delta-G solvation = 104.580278 kcal Electronic energy + Delta-G solvation = -30254.555781 eV Core-core repulsion = 26255.336923 eV Total energy + Delta-G solvation = -3999.218858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.34699 -40.37194 -37.76508 -36.46991 -35.56236 -35.40508 -32.71599 -31.65645 -30.57649 -29.93786 -28.93293 -27.59139 -27.19988 -25.22444 -24.63533 -23.62951 -22.34904 -22.18692 -20.99670 -19.87307 -19.07174 -18.18643 -17.66137 -16.86894 -16.54249 -16.21739 -15.91399 -15.59954 -14.95642 -14.87563 -14.10207 -13.96943 -13.80070 -13.64603 -13.61557 -13.37231 -13.16680 -12.94929 -12.71293 -12.65354 -12.57788 -12.46898 -12.27324 -12.00773 -11.72659 -11.61588 -11.55254 -11.49144 -11.22508 -11.14197 -10.93749 -10.79643 -10.51974 -10.35120 -10.23134 -10.20244 -10.01364 -9.83392 -9.66287 -8.74284 -8.50766 -6.78464 -5.87282 -3.30860 1.01376 1.59788 2.12961 2.17970 2.75437 3.32362 3.38719 3.39324 3.58262 3.81926 3.91364 4.10411 4.34598 4.41797 4.56709 4.68941 4.76903 4.84003 5.11107 5.14337 5.21141 5.24483 5.31135 5.34586 5.35832 5.42913 5.46050 5.47034 5.50450 5.55025 5.67424 5.78566 5.87406 5.90763 5.93103 6.02417 6.14287 6.30501 6.37967 6.47573 6.62894 6.65797 6.81620 7.14061 7.23392 7.55026 7.70845 7.80033 8.35816 8.48123 9.11756 9.74715 10.31227 11.21598 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.002516 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.331114 B =11127.577183 C =11445.127111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.202 3.798 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.085 5.085 8 N -0.294 5.294 9 C 0.093 3.907 10 C 0.497 3.503 11 O -0.520 6.520 12 N -0.598 5.598 13 C 0.067 3.933 14 C 0.145 3.855 15 C -0.137 4.137 16 C 0.148 3.852 17 N -0.591 5.591 18 C -0.258 4.258 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.904 3.096 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.174 3.826 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.020 0.980 45 H 0.256 0.744 46 H 0.021 0.979 47 H 0.092 0.908 48 H 0.052 0.948 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.766 -1.040 0.270 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.076 4.076 5 N -0.149 5.149 6 N -0.068 5.068 7 N -0.070 5.070 8 N -0.094 5.094 9 C -0.033 4.033 10 C 0.281 3.719 11 O -0.396 6.396 12 N -0.330 5.330 13 C -0.076 4.076 14 C 0.044 3.956 15 C -0.178 4.178 16 C 0.020 3.980 17 N -0.314 5.314 18 C -0.387 4.387 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.047 3.953 27 C -0.185 4.185 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.039 0.961 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.189 -0.759 2.101 22.301 hybrid contribution 0.732 -0.769 -1.623 1.940 sum -21.457 -1.528 0.477 21.517 Atomic orbital electron populations 1.21851 0.91941 1.02613 1.03741 1.19792 0.97260 0.96683 0.89492 1.21832 1.02158 0.92907 1.03382 1.26071 0.94811 0.88747 0.97995 1.74938 1.20740 1.20942 0.98320 1.78600 1.06893 0.98865 1.22401 1.78897 1.19011 1.21925 0.87206 1.47894 1.33771 1.20882 1.06881 1.22097 0.96528 0.98658 0.86035 1.20221 0.86155 0.84141 0.81402 1.90820 1.68241 1.28291 1.52242 1.48154 1.21172 1.34064 1.29642 1.21919 0.97830 0.89294 0.98554 1.21327 0.79906 0.97454 0.96927 1.22386 1.00032 1.00271 0.95064 1.20852 0.86897 0.91361 0.98851 1.44074 1.33684 1.43021 1.10633 1.19122 0.91869 1.40102 0.87610 0.91632 1.25074 0.96164 1.01402 0.96836 1.70014 1.16439 1.47757 1.20308 0.86360 0.79342 0.80000 0.80980 1.20823 1.21590 1.21010 1.20760 0.91540 0.97118 0.85858 1.22569 0.98150 0.97614 1.00183 0.90909 0.90740 0.92439 0.89249 0.91048 0.91736 0.90850 0.84573 0.84101 0.91782 0.91614 0.89531 0.88541 0.92857 0.91861 0.92312 0.96212 0.93420 0.96129 0.89032 0.92974 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 4 C 0.20 2.35 6.64 -155.43 -1.03 1.32 16 5 N -0.30 -4.36 12.36 32.70 0.40 -3.96 16 6 N -0.07 -1.19 13.43 60.35 0.81 -0.38 16 7 N -0.09 -1.28 13.29 60.35 0.80 -0.47 16 8 N -0.29 -3.51 2.83 -59.44 -0.17 -3.68 16 9 C 0.09 0.75 5.12 -5.20 -0.03 0.72 16 10 C 0.50 6.15 7.74 -10.99 -0.09 6.06 16 11 O -0.52 -9.09 15.76 5.56 0.09 -9.00 16 12 N -0.60 -6.97 2.76 -173.89 -0.48 -7.45 16 13 C 0.07 0.49 9.33 59.85 0.56 1.05 16 14 C 0.15 2.27 2.48 -67.89 -0.17 2.11 16 15 C -0.14 -2.10 5.31 -26.61 -0.14 -2.24 16 16 C 0.15 2.89 6.51 -3.71 -0.02 2.86 16 17 N -0.59 -14.01 3.00 -172.30 -0.52 -14.53 16 18 C -0.26 -6.74 9.58 -15.06 -0.14 -6.88 16 19 H 0.07 1.67 7.88 -52.49 -0.41 1.26 16 20 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 21 N -0.90 -25.54 11.20 55.49 0.62 -24.92 16 22 Si 0.90 20.92 29.59 -169.99 -5.03 15.90 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.17 3.96 5.30 -3.70 -0.02 3.94 16 27 C -0.14 -2.55 5.34 -26.61 -0.14 -2.69 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.51 6.85 -51.93 -0.36 0.15 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.14 0.50 6.39 -51.92 -0.33 0.17 16 36 H 0.14 0.81 8.11 -51.93 -0.42 0.38 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.23 6.44 -51.93 -0.33 -0.10 16 39 H 0.09 0.69 6.45 -51.93 -0.34 0.35 16 40 H 0.10 1.80 6.90 -51.92 -0.36 1.44 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.92 6.72 -51.93 -0.35 0.57 16 43 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -34.84 390.77 -6.32 -41.16 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -7.81 Total: -3.10 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.93 Total: 4.56 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 1.47 Total: -55.40 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.84 -6.32 -41.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006097779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.740 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds