Wall clock time and date at job start Tue Mar 31 2020 19:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.50703 * 109.46912 * 120.00132 * 2 1 3 5 5 N 1.31072 * 126.65845 * 300.04062 * 4 2 1 6 6 N 1.28845 * 107.99288 * 179.97438 * 5 4 2 7 7 N 1.28737 * 109.39255 * 359.73469 * 6 5 4 8 8 N 1.29024 * 108.80959 * 0.43681 * 7 6 5 9 9 C 1.46500 * 126.43536 * 179.83242 * 8 7 6 10 10 C 1.50691 * 109.47504 * 269.68665 * 9 8 7 11 11 O 1.21280 * 120.00210 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00339 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99813 * 0.02562 * 12 10 9 14 14 C 1.46495 * 120.00350 * 180.02562 * 12 10 9 15 15 C 1.53039 * 109.46476 * 240.00071 * 14 12 10 16 16 C 1.53192 * 109.31624 * 178.61195 * 15 14 12 17 17 N 1.46925 * 108.89163 * 54.56131 * 16 15 14 18 18 C 1.36940 * 120.62821 * 126.46045 * 17 16 15 19 19 H 1.08000 * 119.99751 * 331.92858 * 18 17 16 20 20 C 1.38810 * 120.00078 * 151.92771 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17980 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.18147 * 20 18 17 23 23 H 1.48509 * 109.47304 * 59.99932 * 22 20 18 24 24 H 1.48501 * 109.47440 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47535 * 299.99868 * 22 20 18 26 26 C 1.46954 * 118.71946 * 306.64559 * 17 16 15 27 27 C 1.53044 * 109.46278 * 119.92820 * 14 12 10 28 28 H 1.09005 * 109.46878 * 300.00360 * 1 2 3 29 29 H 1.08993 * 109.46708 * 59.99694 * 1 2 3 30 30 H 1.08993 * 109.47495 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47064 * 239.99375 * 2 1 3 32 32 H 1.09002 * 109.46880 * 59.99949 * 3 2 1 33 33 H 1.08997 * 109.46888 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.46872 * 300.00391 * 3 2 1 35 35 H 1.09010 * 109.46846 * 149.68607 * 9 8 7 36 36 H 1.08998 * 109.47101 * 29.69470 * 9 8 7 37 37 H 1.08998 * 109.46749 * 269.99919 * 13 12 10 38 38 H 1.08997 * 109.46972 * 29.99702 * 13 12 10 39 39 H 1.08997 * 109.46923 * 150.00230 * 13 12 10 40 40 H 1.09009 * 109.46016 * 359.97438 * 14 12 10 41 41 H 1.09005 * 109.49298 * 58.66180 * 15 14 12 42 42 H 1.08998 * 109.49763 * 298.56780 * 15 14 12 43 43 H 1.08997 * 109.58838 * 174.42439 * 16 15 14 44 44 H 1.09002 * 109.58672 * 294.71002 * 16 15 14 45 45 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47125 * 293.56762 * 26 17 16 47 47 H 1.09000 * 109.71403 * 173.28134 * 26 17 16 48 48 H 1.09000 * 109.50000 * 301.34377 * 27 14 12 49 49 H 1.09003 * 109.49095 * 61.43586 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7969 -0.3788 2.4765 6 7 2.3979 -1.2293 3.2351 7 7 3.0061 -2.0981 2.5052 8 7 2.8093 -1.8090 1.2633 9 6 3.3288 -2.5422 0.1063 10 6 4.6668 -1.9732 -0.2896 11 8 5.1402 -1.0467 0.3335 12 7 5.3376 -2.4939 -1.3363 13 6 4.7656 -3.6128 -2.0894 14 6 6.6385 -1.9411 -1.7209 15 6 6.5668 -1.4210 -3.1584 16 6 7.9185 -0.8125 -3.5452 17 7 8.9723 -1.8104 -3.3165 18 6 9.8441 -2.1465 -4.3177 19 1 9.5374 -2.0664 -5.3501 20 6 11.1219 -2.5900 -4.0056 21 7 11.6154 -2.3815 -2.8034 22 14 12.1408 -3.4826 -5.2917 23 1 12.3456 -2.5949 -6.4646 24 1 13.4583 -3.8489 -4.7128 25 1 11.4288 -4.7132 -5.7208 26 6 9.0701 -2.4437 -1.9940 27 6 7.7056 -3.0340 -1.6246 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4423 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 2.6325 -2.4469 -0.7269 36 1 3.4438 -3.5948 0.3650 37 1 5.0919 -4.5536 -1.6462 38 1 3.6777 -3.5540 -2.0572 39 1 5.1017 -3.5632 -3.1251 40 1 6.8973 -1.1213 -1.0506 41 1 5.7907 -0.6592 -3.2313 42 1 6.3327 -2.2452 -3.8322 43 1 7.9045 -0.5305 -4.5979 44 1 8.1109 0.0688 -2.9333 45 1 12.5085 -2.6911 -2.5854 46 1 9.3577 -1.6970 -1.2539 47 1 9.8164 -3.2377 -2.0209 48 1 7.7399 -3.4202 -0.6059 49 1 7.4607 -3.8430 -2.3128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006097779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:04 Heat of formation + Delta-G solvation = 80.561197 kcal Electronic energy + Delta-G solvation = -30255.597327 eV Core-core repulsion = 26255.336923 eV Total energy + Delta-G solvation = -4000.260404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.30635 -41.40580 -39.17992 -37.17976 -36.73869 -36.43606 -34.37206 -32.62000 -32.09436 -31.50802 -29.95927 -28.11203 -27.98666 -26.89488 -25.49225 -24.78392 -23.91535 -23.56725 -21.81621 -21.07563 -20.34387 -19.05352 -18.82286 -18.42889 -17.54972 -17.08062 -17.05299 -16.63851 -16.43618 -15.65106 -15.59310 -15.40206 -14.91287 -14.75548 -14.68008 -14.33786 -14.20062 -14.18193 -13.93256 -13.73216 -13.29793 -13.20829 -13.09405 -13.07281 -13.02009 -12.69793 -12.59924 -12.55447 -12.48215 -12.30439 -12.28535 -12.13110 -12.02742 -11.91115 -11.89591 -11.50951 -11.37727 -11.17989 -10.89222 -10.57394 -9.72676 -8.73623 -7.89278 -5.35889 0.07802 0.82841 1.12395 1.28271 1.48411 1.49926 1.57233 1.83834 2.50951 2.87075 3.12447 3.13735 3.27298 3.56016 3.63071 3.82221 3.84639 4.01532 4.02004 4.05299 4.16765 4.25030 4.31657 4.36663 4.43763 4.60492 4.62360 4.65669 4.73545 4.77532 4.82882 4.83690 4.91345 4.94202 4.99035 5.02799 5.05652 5.10970 5.14418 5.27806 5.28505 5.36920 5.42387 5.47981 5.62238 5.67006 6.23425 6.36698 6.88239 7.11848 7.47400 7.82299 8.34952 9.17895 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.002516 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.331114 B =11127.577183 C =11445.127111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.106 5.106 8 N -0.292 5.292 9 C 0.092 3.908 10 C 0.495 3.505 11 O -0.582 6.582 12 N -0.591 5.591 13 C 0.054 3.946 14 C 0.155 3.845 15 C -0.118 4.118 16 C 0.141 3.859 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.075 0.925 20 C -0.053 4.053 21 N -0.940 5.940 22 Si 0.969 3.031 23 H -0.275 1.275 24 H -0.300 1.300 25 H -0.272 1.272 26 C 0.181 3.819 27 C -0.127 4.127 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.102 0.898 35 H 0.195 0.805 36 H 0.173 0.827 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.001 0.999 45 H 0.249 0.751 46 H -0.018 1.018 47 H 0.058 0.942 48 H 0.052 0.948 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.240 -2.676 -2.785 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.201 4.201 4 C -0.069 4.069 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.092 5.092 8 N -0.093 5.093 9 C -0.032 4.032 10 C 0.281 3.719 11 O -0.462 6.462 12 N -0.322 5.322 13 C -0.087 4.087 14 C 0.052 3.948 15 C -0.158 4.158 16 C 0.015 3.985 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.092 0.908 20 C -0.248 4.248 21 N -0.586 5.586 22 Si 0.797 3.203 23 H -0.201 1.201 24 H -0.226 1.226 25 H -0.198 1.198 26 C 0.054 3.946 27 C -0.167 4.167 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.121 0.879 35 H 0.212 0.788 36 H 0.190 0.810 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.019 0.981 45 H 0.058 0.942 46 H 0.000 1.000 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.720 -2.428 -0.992 25.854 hybrid contribution 1.825 -0.179 -0.710 1.966 sum -23.895 -2.606 -1.702 24.097 Atomic orbital electron populations 1.21849 0.90091 1.03482 1.04199 1.20134 0.98625 0.95800 0.88671 1.21826 1.00202 0.93916 1.04188 1.26826 0.93535 0.88194 0.98335 1.74849 1.21729 1.21447 0.99818 1.78555 1.08100 0.99807 1.23672 1.78785 1.19354 1.22342 0.88705 1.48145 1.33292 1.21114 1.06765 1.22591 0.94831 0.99245 0.86484 1.20918 0.87343 0.83169 0.80449 1.90818 1.70005 1.31184 1.54154 1.48008 1.19402 1.34853 1.29944 1.22356 1.00884 0.87687 0.97744 1.20810 0.81749 0.95657 0.96592 1.22150 0.97621 1.01312 0.94701 1.21031 0.88132 0.90307 0.99054 1.44331 1.34332 1.44267 1.10207 1.19533 0.92177 1.38905 0.88553 0.90770 1.25875 0.97533 1.02728 0.98673 1.70201 1.16475 1.49476 1.22455 0.85312 0.77269 0.79107 0.78579 1.20061 1.22609 1.19810 1.20492 0.93890 0.95144 0.85056 1.22267 0.95734 0.98284 1.00392 0.92678 0.88083 0.91370 0.85979 0.92473 0.94665 0.87887 0.78820 0.80964 0.90856 0.86464 0.89590 0.92320 0.90254 0.89905 0.91571 0.98090 0.94181 0.99992 0.92325 0.92923 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.18 71.98 0.66 -0.42 16 2 C -0.01 -0.13 3.26 -11.54 -0.04 -0.17 16 3 C -0.14 -2.14 9.18 71.98 0.66 -1.48 16 4 C 0.21 4.52 6.64 138.14 0.92 5.44 16 5 N -0.33 -9.59 12.36 -50.45 -0.62 -10.22 16 6 N -0.11 -3.55 13.43 37.01 0.50 -3.05 16 7 N -0.11 -3.13 13.29 37.02 0.49 -2.63 16 8 N -0.29 -6.33 2.83 -341.98 -0.97 -7.30 16 9 C 0.09 1.06 5.12 85.63 0.44 1.50 16 10 C 0.49 10.91 7.74 87.65 0.68 11.59 16 11 O -0.58 -20.30 15.76 -3.03 -0.05 -20.35 16 12 N -0.59 -11.78 2.76 -822.45 -2.27 -14.05 16 13 C 0.05 0.48 9.33 127.77 1.19 1.68 16 14 C 0.16 4.69 2.48 45.02 0.11 4.81 16 15 C -0.12 -3.32 5.31 30.67 0.16 -3.15 16 16 C 0.14 5.46 6.51 86.36 0.56 6.02 16 17 N -0.61 -29.25 3.00 -699.03 -2.10 -31.35 16 18 C -0.26 -13.75 9.58 84.03 0.81 -12.94 16 19 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 20 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 21 N -0.94 -55.55 11.20 21.65 0.24 -55.30 16 22 Si 0.97 43.40 29.59 68.60 2.03 45.43 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 24 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 C 0.18 8.61 5.30 86.36 0.46 9.07 16 27 C -0.13 -4.43 5.34 30.67 0.16 -4.26 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.12 0.69 6.85 -2.39 -0.02 0.67 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.19 -0.06 6.39 -2.38 -0.02 -0.07 16 36 H 0.17 1.01 8.11 -2.39 -0.02 0.99 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.12 -0.12 6.44 -2.39 -0.02 -0.13 16 39 H 0.09 0.87 6.45 -2.39 -0.02 0.85 16 40 H 0.06 2.26 6.90 -2.38 -0.02 2.24 16 41 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.08 2.06 6.72 -2.39 -0.02 2.05 16 43 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 44 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 47 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 48 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.08 2.42 7.72 -2.39 -0.02 2.40 16 Total: -1.00 -85.15 390.77 5.39 -79.76 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 0.95 Total: 3.86 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 7.19 Total: 15.20 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -4.73 Total: -123.91 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -85.15 5.39 -79.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006097779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.321 kcal (2) G-P(sol) polarization free energy of solvation -85.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds