Wall clock time and date at job start Tue Mar 31 2020 20:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47435 * 2 1 4 4 C 1.53006 * 109.46822 * 240.00131 * 2 1 3 5 5 N 1.46497 * 109.47313 * 120.00585 * 2 1 3 6 6 N 1.28787 * 125.44850 * 0.02562 * 5 2 1 7 7 N 1.28999 * 108.72629 * 179.97438 * 6 5 2 8 8 C 1.33313 * 107.35236 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.54729 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47142 * 90.02449 * 9 8 7 11 11 O 1.21283 * 119.99849 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00059 * 180.02562 * 10 9 8 13 13 C 1.46508 * 119.99884 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.49242 * 325.05950 * 13 12 10 15 15 C 1.53040 * 109.49250 * 204.99803 * 13 12 10 16 16 C 1.53044 * 109.53699 * 178.67892 * 15 13 12 17 17 C 1.53194 * 109.30845 * 61.36428 * 16 15 13 18 18 N 1.46930 * 108.77526 * 305.36479 * 17 16 15 19 19 C 1.36937 * 120.63039 * 233.58694 * 18 17 16 20 20 H 1.08008 * 119.99890 * 27.68061 * 19 18 17 21 21 C 1.38816 * 120.00051 * 207.68476 * 19 18 17 22 22 N 1.31619 * 120.00023 * 17.37691 * 21 19 18 23 23 Si 1.86794 * 119.99962 * 197.37735 * 21 19 18 24 24 H 1.48503 * 109.47062 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47189 * 119.99581 * 23 21 19 26 26 H 1.48501 * 109.47139 * 239.99821 * 23 21 19 27 27 C 1.46925 * 118.73866 * 53.61073 * 18 17 16 28 28 N 1.28883 * 125.45055 * 180.30712 * 5 2 1 29 29 H 1.09000 * 109.46407 * 299.99452 * 1 2 3 30 30 H 1.08994 * 109.47449 * 59.99306 * 1 2 3 31 31 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47390 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47368 * 300.00743 * 3 2 1 34 34 H 1.09008 * 109.46677 * 60.00232 * 3 2 1 35 35 H 1.08996 * 109.47421 * 300.00116 * 4 2 1 36 36 H 1.09004 * 109.47085 * 60.00429 * 4 2 1 37 37 H 1.09002 * 109.47155 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.47250 * 210.02347 * 9 8 7 39 39 H 1.08996 * 109.47006 * 330.02482 * 9 8 7 40 40 H 0.97001 * 119.99934 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.46147 * 298.69744 * 15 13 12 42 42 H 1.09001 * 109.46232 * 58.67369 * 15 13 12 43 43 H 1.08991 * 109.49883 * 181.31498 * 16 15 13 44 44 H 1.08995 * 109.49547 * 301.38480 * 16 15 13 45 45 H 1.08992 * 109.58772 * 65.15272 * 17 16 15 46 46 H 1.09005 * 109.58297 * 185.57821 * 17 16 15 47 47 H 0.96993 * 119.99990 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58703 * 186.59947 * 27 18 17 49 49 H 1.09002 * 109.58252 * 66.17438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2783 -1.2182 2.1085 7 7 2.0400 -1.7391 3.0098 8 6 3.3017 -1.5241 2.6368 9 6 4.5421 -1.9530 3.3775 10 6 4.9552 -3.3257 2.9128 11 8 4.3061 -3.8995 2.0640 12 7 6.0455 -3.9163 3.4411 13 6 6.4474 -5.2506 2.9888 14 1 5.5593 -5.8413 2.7641 15 6 7.2552 -5.9412 4.0900 16 6 7.6475 -7.3477 3.6314 17 6 8.5248 -7.2460 2.3797 18 7 7.8119 -6.4574 1.3654 19 6 7.6184 -6.9545 0.1042 20 1 7.5638 -8.0217 -0.0531 21 6 7.4926 -6.0870 -0.9721 22 7 7.8905 -4.8373 -0.8601 23 14 6.7588 -6.6930 -2.5794 24 1 6.3938 -8.1264 -2.4476 25 1 5.5447 -5.9000 -2.8994 26 1 7.7549 -6.5345 -3.6693 27 6 7.3109 -5.1252 1.7299 28 7 3.2574 -0.8633 1.5061 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 5.3468 -1.2449 3.1794 39 1 4.3357 -1.9785 4.4475 40 1 6.5644 -3.4576 4.1202 41 1 8.1553 -5.3626 4.2973 42 1 6.6512 -6.0098 4.9948 43 1 8.2027 -7.8474 4.4251 44 1 6.7485 -7.9191 3.4008 45 1 9.4644 -6.7541 2.6309 46 1 8.7251 -8.2448 1.9918 47 1 7.8023 -4.2310 -1.6121 48 1 6.7104 -4.7246 0.9132 49 1 8.1517 -4.4604 1.9282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007399647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:08 Heat of formation + Delta-G solvation = 104.319592 kcal Electronic energy + Delta-G solvation = -30062.865915 eV Core-core repulsion = 26063.635752 eV Total energy + Delta-G solvation = -3999.230162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.23213 -39.46073 -37.81348 -37.24391 -34.09856 -33.45078 -33.10186 -32.63920 -30.20258 -29.80311 -28.30421 -27.84902 -27.63081 -25.24542 -24.53508 -23.00904 -22.14631 -21.58085 -20.65789 -19.97498 -19.25949 -17.38316 -17.14936 -16.74468 -16.42731 -15.79945 -15.07285 -14.82453 -14.53858 -14.44600 -14.14347 -13.97675 -13.67646 -13.58152 -13.33236 -13.21931 -13.01297 -12.79383 -12.66805 -12.42567 -12.30510 -12.16663 -12.12527 -11.89528 -11.79468 -11.76693 -11.34532 -11.00415 -10.79541 -10.73800 -10.71339 -10.69386 -10.46120 -10.21529 -10.13149 -9.95992 -9.91793 -9.50130 -9.31744 -8.51774 -8.41124 -6.63515 -5.73714 -3.16407 1.37703 1.87591 2.26018 3.02847 3.42142 3.50263 3.51735 3.53689 3.85869 4.12433 4.22440 4.33395 4.55498 4.60054 5.00809 5.06241 5.08985 5.19284 5.21852 5.23658 5.32325 5.37704 5.38495 5.42854 5.49687 5.57023 5.59837 5.65072 5.69205 5.75123 5.80932 5.89434 6.00955 6.11027 6.17695 6.32564 6.36031 6.44623 6.52826 6.72584 6.79741 6.96101 6.98767 7.32855 7.75444 7.85078 7.93868 8.50106 8.51771 8.65658 9.25257 9.89453 10.44058 11.34242 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.003505 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.431335 B = 7987.144474 C = 9864.136165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 C -0.157 4.157 4 C -0.161 4.161 5 N -0.130 5.130 6 N -0.067 5.067 7 N -0.279 5.279 8 C 0.188 3.812 9 C -0.044 4.044 10 C 0.517 3.483 11 O -0.524 6.524 12 N -0.718 5.718 13 C 0.118 3.882 14 H 0.081 0.919 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.142 3.858 18 N -0.589 5.589 19 C -0.255 4.255 20 H 0.066 0.934 21 C 0.007 3.993 22 N -0.898 5.898 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.167 3.833 28 N -0.291 5.291 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.394 0.606 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.018 0.982 46 H 0.055 0.945 47 H 0.252 0.748 48 H 0.094 0.906 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.457 13.094 7.481 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.098 3.902 3 C -0.215 4.215 4 C -0.220 4.220 5 N -0.044 5.044 6 N -0.059 5.059 7 N -0.150 5.150 8 C -0.095 4.095 9 C -0.088 4.088 10 C 0.300 3.700 11 O -0.399 6.399 12 N -0.369 5.369 13 C 0.013 3.987 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.171 4.171 17 C 0.016 3.984 18 N -0.312 5.312 19 C -0.384 4.384 20 H 0.084 0.916 21 C -0.192 4.192 22 N -0.542 5.542 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.040 3.960 28 N -0.140 5.140 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.227 0.773 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.112 0.888 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.596 12.869 6.552 17.911 hybrid contribution 0.454 -0.064 -0.437 0.634 sum -10.142 12.805 6.115 17.442 Atomic orbital electron populations 1.22075 0.90269 1.04636 1.03984 1.21354 0.96265 0.92619 0.79920 1.22217 1.03447 0.92136 1.03739 1.22254 1.03756 1.01240 0.94709 1.50387 1.01186 1.34867 1.17988 1.78840 1.22045 1.09390 0.95617 1.75759 1.00796 1.18082 1.20380 1.24600 0.94775 0.98348 0.91760 1.19885 0.91957 0.96518 1.00398 1.20001 0.81030 0.86711 0.82275 1.90780 1.53319 1.64849 1.30938 1.45970 1.28234 1.19877 1.42866 1.21973 0.99059 0.81224 0.96480 0.90073 1.21673 0.99315 0.97312 0.97065 1.22004 1.00832 0.95433 0.98847 1.20959 0.92738 0.95830 0.88886 1.43980 1.62460 1.16130 1.08613 1.19190 1.44389 0.91782 0.83082 0.91588 1.25007 1.00245 0.96390 0.97590 1.70023 1.48222 1.05046 1.30934 0.86266 0.78795 0.78338 0.83653 1.20168 1.21575 1.21726 1.21085 0.94592 0.86787 0.93517 1.74586 1.03068 1.20442 1.15949 0.90742 0.89388 0.90576 0.90312 0.89287 0.91570 0.91195 0.89333 0.90125 0.86104 0.86017 0.77313 0.92204 0.93020 0.92616 0.92148 0.96379 0.92658 0.93773 0.88792 0.96478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.91 37.16 0.29 -0.89 16 2 C 0.18 1.82 1.30 -131.82 -0.17 1.65 16 3 C -0.16 -1.21 8.66 37.15 0.32 -0.89 16 4 C -0.16 -1.67 8.67 37.16 0.32 -1.34 16 5 N -0.13 -1.89 3.73 0.48 0.00 -1.89 16 6 N -0.07 -1.07 12.24 60.35 0.74 -0.33 16 7 N -0.28 -4.82 12.50 32.45 0.41 -4.42 16 8 C 0.19 3.08 6.86 -156.63 -1.07 2.01 16 9 C -0.04 -0.58 6.33 -29.03 -0.18 -0.77 16 10 C 0.52 9.17 7.79 -10.99 -0.09 9.08 16 11 O -0.52 -12.29 15.70 5.55 0.09 -12.21 16 12 N -0.72 -11.48 5.08 -53.69 -0.27 -11.75 16 13 C 0.12 2.31 2.61 -67.81 -0.18 2.14 16 14 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 15 C -0.12 -1.85 5.35 -26.69 -0.14 -2.00 16 16 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 17 C 0.14 2.98 6.52 -3.71 -0.02 2.95 16 18 N -0.59 -15.16 2.99 -172.32 -0.52 -15.67 16 19 C -0.25 -7.27 9.59 -15.06 -0.14 -7.41 16 20 H 0.07 1.85 7.89 -52.48 -0.41 1.43 16 21 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 22 N -0.90 -27.08 11.19 55.49 0.62 -26.46 16 23 Si 0.90 22.87 29.59 -169.99 -5.03 17.85 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C 0.17 4.11 4.89 -3.72 -0.02 4.09 16 28 N -0.29 -4.74 11.83 32.47 0.38 -4.36 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.39 4.61 8.60 -40.82 -0.35 4.26 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 47 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.09 2.75 6.04 -51.93 -0.31 2.44 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -37.60 398.37 -7.11 -44.71 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.21 Total: 2.20 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.33 Total: 6.32 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: 1.36 Total: -64.88 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.60 -7.11 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007399647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.034 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds