Wall clock time and date at job start Tue Mar 31 2020 20:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47435 * 2 1 4 4 C 1.53006 * 109.46822 * 240.00131 * 2 1 3 5 5 N 1.46497 * 109.47313 * 120.00585 * 2 1 3 6 6 N 1.28787 * 125.44850 * 0.02562 * 5 2 1 7 7 N 1.28999 * 108.72629 * 179.97438 * 6 5 2 8 8 C 1.33313 * 107.35236 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.54729 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47142 * 90.02449 * 9 8 7 11 11 O 1.21283 * 119.99849 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00059 * 180.02562 * 10 9 8 13 13 C 1.46508 * 119.99884 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.49242 * 325.05950 * 13 12 10 15 15 C 1.53040 * 109.49250 * 204.99803 * 13 12 10 16 16 C 1.53044 * 109.53699 * 178.67892 * 15 13 12 17 17 C 1.53194 * 109.30845 * 61.36428 * 16 15 13 18 18 N 1.46930 * 108.77526 * 305.36479 * 17 16 15 19 19 C 1.36937 * 120.63039 * 233.58694 * 18 17 16 20 20 H 1.08008 * 119.99890 * 27.68061 * 19 18 17 21 21 C 1.38816 * 120.00051 * 207.68476 * 19 18 17 22 22 N 1.31619 * 120.00023 * 17.37691 * 21 19 18 23 23 Si 1.86794 * 119.99962 * 197.37735 * 21 19 18 24 24 H 1.48503 * 109.47062 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47189 * 119.99581 * 23 21 19 26 26 H 1.48501 * 109.47139 * 239.99821 * 23 21 19 27 27 C 1.46925 * 118.73866 * 53.61073 * 18 17 16 28 28 N 1.28883 * 125.45055 * 180.30712 * 5 2 1 29 29 H 1.09000 * 109.46407 * 299.99452 * 1 2 3 30 30 H 1.08994 * 109.47449 * 59.99306 * 1 2 3 31 31 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47390 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47368 * 300.00743 * 3 2 1 34 34 H 1.09008 * 109.46677 * 60.00232 * 3 2 1 35 35 H 1.08996 * 109.47421 * 300.00116 * 4 2 1 36 36 H 1.09004 * 109.47085 * 60.00429 * 4 2 1 37 37 H 1.09002 * 109.47155 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.47250 * 210.02347 * 9 8 7 39 39 H 1.08996 * 109.47006 * 330.02482 * 9 8 7 40 40 H 0.97001 * 119.99934 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.46147 * 298.69744 * 15 13 12 42 42 H 1.09001 * 109.46232 * 58.67369 * 15 13 12 43 43 H 1.08991 * 109.49883 * 181.31498 * 16 15 13 44 44 H 1.08995 * 109.49547 * 301.38480 * 16 15 13 45 45 H 1.08992 * 109.58772 * 65.15272 * 17 16 15 46 46 H 1.09005 * 109.58297 * 185.57821 * 17 16 15 47 47 H 0.96993 * 119.99990 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58703 * 186.59947 * 27 18 17 49 49 H 1.09002 * 109.58252 * 66.17438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2783 -1.2182 2.1085 7 7 2.0400 -1.7391 3.0098 8 6 3.3017 -1.5241 2.6368 9 6 4.5421 -1.9530 3.3775 10 6 4.9552 -3.3257 2.9128 11 8 4.3061 -3.8995 2.0640 12 7 6.0455 -3.9163 3.4411 13 6 6.4474 -5.2506 2.9888 14 1 5.5593 -5.8413 2.7641 15 6 7.2552 -5.9412 4.0900 16 6 7.6475 -7.3477 3.6314 17 6 8.5248 -7.2460 2.3797 18 7 7.8119 -6.4574 1.3654 19 6 7.6184 -6.9545 0.1042 20 1 7.5638 -8.0217 -0.0531 21 6 7.4926 -6.0870 -0.9721 22 7 7.8905 -4.8373 -0.8601 23 14 6.7588 -6.6930 -2.5794 24 1 6.3938 -8.1264 -2.4476 25 1 5.5447 -5.9000 -2.8994 26 1 7.7549 -6.5345 -3.6693 27 6 7.3109 -5.1252 1.7299 28 7 3.2574 -0.8633 1.5061 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 5.3468 -1.2449 3.1794 39 1 4.3357 -1.9785 4.4475 40 1 6.5644 -3.4576 4.1202 41 1 8.1553 -5.3626 4.2973 42 1 6.6512 -6.0098 4.9948 43 1 8.2027 -7.8474 4.4251 44 1 6.7485 -7.9191 3.4008 45 1 9.4644 -6.7541 2.6309 46 1 8.7251 -8.2448 1.9918 47 1 7.8023 -4.2310 -1.6121 48 1 6.7104 -4.7246 0.9132 49 1 8.1517 -4.4604 1.9282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007399647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:07 Heat of formation + Delta-G solvation = 76.123654 kcal Electronic energy + Delta-G solvation = -30064.088582 eV Core-core repulsion = 26063.635752 eV Total energy + Delta-G solvation = -4000.452830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.40203 -40.95074 -39.02868 -38.57163 -35.82635 -34.67767 -34.45745 -34.16814 -31.97766 -31.29572 -29.65572 -28.57970 -28.40852 -27.25375 -25.64937 -24.40033 -23.90991 -23.04925 -21.69457 -21.42837 -20.85852 -18.79158 -18.59059 -18.08410 -17.70169 -17.33295 -16.76792 -16.34266 -15.85091 -15.53617 -15.32835 -15.27510 -15.18937 -14.99307 -14.74811 -14.63149 -14.16200 -14.10189 -13.97844 -13.50890 -13.47012 -13.26358 -13.23463 -12.99034 -12.91343 -12.89059 -12.70470 -12.59943 -12.48920 -12.25370 -12.20227 -12.07929 -11.97553 -11.87489 -11.70161 -11.60281 -11.33747 -11.26327 -10.77143 -10.58998 -10.09381 -8.70952 -7.92248 -5.37048 0.19845 0.90418 1.03983 1.35130 1.39514 1.48103 1.64259 2.23616 2.45665 2.81407 3.13041 3.23983 3.47445 3.56381 3.63955 3.68561 3.87417 4.00139 4.16072 4.19703 4.29214 4.36621 4.40462 4.47797 4.48190 4.53176 4.56427 4.62393 4.67628 4.68080 4.69151 4.76966 4.83521 4.93717 4.97070 5.06468 5.09959 5.18666 5.21095 5.24340 5.32824 5.34909 5.46681 5.52754 5.60322 5.78349 6.33926 6.62533 7.09643 7.31345 7.34320 7.83629 8.31721 9.12274 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.003505 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.431335 B = 7987.144474 C = 9864.136165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.162 3.838 3 C -0.150 4.150 4 C -0.159 4.159 5 N -0.122 5.122 6 N -0.077 5.077 7 N -0.305 5.305 8 C 0.174 3.826 9 C -0.035 4.035 10 C 0.512 3.488 11 O -0.590 6.590 12 N -0.701 5.701 13 C 0.132 3.868 14 H 0.044 0.956 15 C -0.106 4.106 16 C -0.123 4.123 17 C 0.135 3.865 18 N -0.611 5.611 19 C -0.263 4.263 20 H 0.066 0.934 21 C -0.049 4.049 22 N -0.928 5.928 23 Si 0.956 3.044 24 H -0.264 1.264 25 H -0.302 1.302 26 H -0.282 1.282 27 C 0.180 3.820 28 N -0.311 5.311 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.129 0.871 37 H 0.054 0.946 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.420 0.580 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.047 0.953 45 H 0.025 0.975 46 H 0.053 0.947 47 H 0.246 0.754 48 H 0.039 0.961 49 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 14.013 9.169 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.083 3.917 3 C -0.208 4.208 4 C -0.217 4.217 5 N -0.037 5.037 6 N -0.069 5.069 7 N -0.175 5.175 8 C -0.109 4.109 9 C -0.077 4.077 10 C 0.298 3.702 11 O -0.470 6.470 12 N -0.353 5.353 13 C 0.025 3.975 14 H 0.063 0.937 15 C -0.144 4.144 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.335 5.335 19 C -0.394 4.394 20 H 0.084 0.916 21 C -0.244 4.244 22 N -0.574 5.574 23 Si 0.785 3.215 24 H -0.188 1.188 25 H -0.229 1.229 26 H -0.208 1.208 27 C 0.053 3.947 28 N -0.162 5.162 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.170 0.830 39 H 0.183 0.817 40 H 0.257 0.743 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -10.625 13.786 8.311 19.288 hybrid contribution 0.484 -0.359 -1.014 1.180 sum -10.141 13.426 7.297 18.340 Atomic orbital electron populations 1.22125 0.88254 1.04127 1.05941 1.21986 0.97902 0.93589 0.78220 1.22232 1.02468 0.90431 1.05677 1.22279 1.02099 1.00536 0.96792 1.50923 1.00614 1.33830 1.18364 1.78742 1.22264 1.09814 0.96064 1.75700 1.01379 1.19025 1.21407 1.25170 0.95477 0.98253 0.91980 1.20055 0.91695 0.93674 1.02251 1.20833 0.80430 0.87957 0.81007 1.90758 1.55468 1.66821 1.33925 1.45732 1.28012 1.18779 1.42827 1.21482 0.97027 0.82888 0.96085 0.93733 1.21644 0.99951 0.96280 0.96483 1.21911 0.99940 0.96432 0.97940 1.21191 0.93438 0.94930 0.89419 1.44270 1.63644 1.16738 1.08848 1.19522 1.43311 0.91937 0.84608 0.91583 1.25724 1.01318 0.96723 1.00666 1.70163 1.49808 1.06005 1.31398 0.85368 0.77515 0.78211 0.80451 1.18783 1.22944 1.20827 1.20783 0.93812 0.86114 0.94033 1.74554 1.04177 1.21198 1.16223 0.90570 0.85578 0.92304 0.91836 0.85649 0.91252 0.93684 0.85232 0.92645 0.83015 0.81721 0.74251 0.90197 0.89406 0.88309 0.93408 0.95718 0.92833 0.94457 0.94221 0.97795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 7.91 71.98 0.57 -1.52 16 2 C 0.16 3.20 1.30 3.61 0.00 3.20 16 3 C -0.15 -2.06 8.66 71.98 0.62 -1.44 16 4 C -0.16 -3.31 8.67 71.98 0.62 -2.68 16 5 N -0.12 -3.60 3.73 -152.40 -0.57 -4.16 16 6 N -0.08 -2.51 12.24 37.02 0.45 -2.06 16 7 N -0.30 -10.68 12.50 -51.26 -0.64 -11.32 16 8 C 0.17 5.73 6.86 138.55 0.95 6.68 16 9 C -0.03 -0.86 6.33 29.10 0.18 -0.68 16 10 C 0.51 18.22 7.79 87.66 0.68 18.91 16 11 O -0.59 -29.08 15.70 -3.04 -0.05 -29.13 16 12 N -0.70 -21.62 5.08 -442.16 -2.25 -23.87 16 13 C 0.13 5.14 2.61 45.06 0.12 5.26 16 14 H 0.04 2.09 7.58 -2.39 -0.02 2.07 16 15 C -0.11 -3.05 5.35 30.62 0.16 -2.88 16 16 C -0.12 -3.85 6.08 30.67 0.19 -3.66 16 17 C 0.14 5.51 6.52 86.36 0.56 6.08 16 18 N -0.61 -32.06 2.99 -699.10 -2.09 -34.16 16 19 C -0.26 -15.44 9.59 84.03 0.81 -14.64 16 20 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 21 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 22 N -0.93 -58.42 11.19 21.65 0.24 -58.18 16 23 Si 0.96 48.62 29.59 68.60 2.03 50.65 16 24 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 26 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 27 C 0.18 9.10 4.89 86.36 0.42 9.52 16 28 N -0.31 -10.38 11.83 -51.20 -0.61 -10.99 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 30 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.15 2.82 8.14 -2.38 -0.02 2.80 16 39 H 0.17 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.42 8.55 8.60 -92.71 -0.80 7.75 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.05 2.16 7.93 -2.38 -0.02 2.14 16 47 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.04 2.44 6.04 -2.39 -0.01 2.43 16 49 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -90.12 398.37 2.98 -87.13 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.15 Total: 16.42 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 6.31 Total: 19.65 kcal Atomic # 7 Polarization: -139.28 SS G_CDS: -5.46 Total: -144.74 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.05 Total: -29.13 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -90.12 2.98 -87.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007399647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.257 kcal (2) G-P(sol) polarization free energy of solvation -90.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds