Wall clock time and date at job start Tue Mar 31 2020 20:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.52998 * 109.46893 * 240.00182 * 2 1 3 5 5 N 1.46500 * 109.47009 * 120.00507 * 2 1 3 6 6 N 1.28783 * 125.44472 * 239.99776 * 5 2 1 7 7 N 1.29003 * 108.72448 * 179.72407 * 6 5 2 8 8 C 1.33315 * 107.35252 * 0.43192 * 7 6 5 9 9 C 1.50699 * 126.54850 * 179.83728 * 8 7 6 10 10 C 1.50705 * 109.46679 * 269.68623 * 9 8 7 11 11 O 1.21282 * 120.00278 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99720 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99785 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.50078 * 34.93818 * 13 12 10 15 15 C 1.53042 * 109.49765 * 155.00212 * 13 12 10 16 16 C 1.53040 * 109.54174 * 181.31850 * 15 13 12 17 17 C 1.53188 * 109.30921 * 298.63667 * 16 15 13 18 18 N 1.46926 * 108.77817 * 54.63345 * 17 16 15 19 19 C 1.36932 * 120.62923 * 126.37040 * 18 17 16 20 20 H 1.08003 * 120.00058 * 207.50814 * 19 18 17 21 21 C 1.38813 * 120.00216 * 27.51552 * 19 18 17 22 22 N 1.31614 * 120.00042 * 17.83429 * 21 19 18 23 23 Si 1.86803 * 119.99907 * 197.83738 * 21 19 18 24 24 H 1.48501 * 109.47098 * 265.35618 * 23 21 19 25 25 H 1.48493 * 109.47161 * 145.35673 * 23 21 19 26 26 H 1.48505 * 109.47060 * 25.35372 * 23 21 19 27 27 C 1.46930 * 118.73807 * 306.63893 * 18 17 16 28 28 N 1.28880 * 125.45314 * 59.99627 * 5 2 1 29 29 H 1.08999 * 109.46499 * 299.99948 * 1 2 3 30 30 H 1.09001 * 109.46967 * 59.99546 * 1 2 3 31 31 H 1.08998 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47166 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46855 * 300.00497 * 3 2 1 34 34 H 1.08995 * 109.47058 * 60.00129 * 3 2 1 35 35 H 1.09004 * 109.46949 * 299.99874 * 4 2 1 36 36 H 1.08996 * 109.47608 * 59.99622 * 4 2 1 37 37 H 1.09003 * 109.47336 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.46951 * 149.68979 * 9 8 7 39 39 H 1.09004 * 109.47073 * 29.68408 * 9 8 7 40 40 H 0.97000 * 120.00234 * 0.02562 * 12 10 9 41 41 H 1.09004 * 109.45919 * 61.29442 * 15 13 12 42 42 H 1.09004 * 109.46121 * 301.34047 * 15 13 12 43 43 H 1.09002 * 109.49979 * 178.68243 * 16 15 13 44 44 H 1.08998 * 109.49588 * 58.58319 * 16 15 13 45 45 H 1.09003 * 109.58681 * 294.84505 * 17 16 15 46 46 H 1.09001 * 109.70413 * 174.49134 * 17 16 15 47 47 H 0.97004 * 120.00090 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58323 * 173.14513 * 27 18 17 49 49 H 1.08997 * 109.58717 * 293.57457 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 2.7619 -0.1686 2.1088 7 7 2.9940 -1.0586 3.0133 8 6 2.3752 -2.1781 2.6376 9 6 2.3652 -3.4901 3.3788 10 6 3.5220 -4.3376 2.9154 11 8 4.2801 -3.9174 2.0672 12 7 3.7146 -5.5622 3.4445 13 6 4.8388 -6.3863 2.9936 14 1 5.6921 -5.7463 2.7693 15 6 5.2196 -7.3778 4.0955 16 6 6.4149 -8.2169 3.6383 17 6 6.0276 -9.0105 2.3866 18 7 5.5229 -8.0759 1.3715 19 6 6.0577 -8.0594 0.1110 20 1 6.0354 -7.1513 -0.4732 21 6 6.6286 -9.2097 -0.4159 22 7 6.3581 -10.3823 0.1172 23 14 7.7808 -9.0936 -1.8817 24 1 7.0137 -9.3180 -3.1333 25 1 8.8421 -10.1249 -1.7600 26 1 8.4023 -7.7453 -1.9171 27 6 4.4374 -7.1554 1.7362 28 7 1.7726 -1.9180 1.5033 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 1.4294 -4.0126 3.1801 39 1 2.4571 -3.3036 4.4489 40 1 3.1085 -5.8982 4.1232 41 1 4.3736 -8.0333 4.3024 42 1 5.4847 -6.8309 5.0004 43 1 6.7003 -8.9067 4.4327 44 1 7.2535 -7.5600 3.4076 45 1 5.2502 -9.7323 2.6375 46 1 6.9012 -9.5345 1.9987 47 1 6.7573 -11.1861 -0.2508 48 1 4.2636 -6.4538 0.9203 49 1 3.5277 -7.7227 1.9331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007399650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:13 Heat of formation + Delta-G solvation = 103.891716 kcal Electronic energy + Delta-G solvation = -29569.469604 eV Core-core repulsion = 25570.220887 eV Total energy + Delta-G solvation = -3999.248717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.36401 -39.66696 -37.92825 -37.31911 -34.30299 -33.59539 -33.23930 -32.39468 -30.45948 -30.00893 -28.28559 -27.96657 -27.70516 -25.26477 -24.66309 -23.11283 -22.11448 -21.70584 -20.78398 -20.15334 -19.30415 -17.51690 -17.26962 -16.76332 -16.57361 -15.86483 -15.27569 -14.81168 -14.66032 -14.56091 -14.32392 -14.02616 -13.81734 -13.56761 -13.48762 -13.29655 -13.11491 -12.90620 -12.77167 -12.43492 -12.38506 -12.28017 -12.25618 -11.95998 -11.89410 -11.79466 -11.46335 -11.07329 -10.92132 -10.88289 -10.83977 -10.75349 -10.30007 -10.24087 -10.21612 -9.90825 -9.87924 -9.60940 -9.45401 -8.81608 -8.37965 -6.65475 -5.76577 -3.17498 1.24712 1.74855 2.12309 2.81133 3.34683 3.40608 3.47474 3.52525 3.72327 3.99121 4.11184 4.21961 4.46283 4.53927 4.85166 4.95258 4.98496 5.06750 5.08232 5.13690 5.21618 5.24471 5.31478 5.35180 5.40860 5.49869 5.55537 5.59063 5.64736 5.67249 5.74527 5.75562 5.88336 6.10345 6.18454 6.20077 6.26913 6.54930 6.63376 6.68644 6.71546 6.86289 7.01551 7.37817 7.66568 7.72887 7.85251 8.38863 8.41944 8.49277 9.24427 9.87079 10.42468 11.32347 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.002723 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.588125 B =10279.748516 C =11819.333073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 C -0.152 4.152 4 C -0.160 4.160 5 N -0.130 5.130 6 N -0.065 5.065 7 N -0.278 5.278 8 C 0.187 3.813 9 C -0.045 4.045 10 C 0.517 3.483 11 O -0.527 6.527 12 N -0.720 5.720 13 C 0.127 3.873 14 H 0.085 0.915 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.167 3.833 18 N -0.588 5.588 19 C -0.249 4.249 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.143 3.857 28 N -0.293 5.293 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.396 0.604 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.019 0.981 46 H 0.089 0.911 47 H 0.253 0.747 48 H 0.056 0.944 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 18.761 5.670 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.098 3.902 3 C -0.210 4.210 4 C -0.219 4.219 5 N -0.044 5.044 6 N -0.057 5.057 7 N -0.149 5.149 8 C -0.096 4.096 9 C -0.088 4.088 10 C 0.300 3.700 11 O -0.403 6.403 12 N -0.371 5.371 13 C 0.021 3.979 14 H 0.103 0.897 15 C -0.152 4.152 16 C -0.180 4.180 17 C 0.041 3.959 18 N -0.311 5.311 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.015 3.985 28 N -0.143 5.143 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.230 0.770 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.037 0.963 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -13.073 19.562 4.815 24.016 hybrid contribution 0.183 -0.767 -0.311 0.848 sum -12.890 18.795 4.504 23.231 Atomic orbital electron populations 1.22222 0.90960 1.04530 1.03839 1.21371 0.95996 0.92971 0.79859 1.22081 1.03310 0.91568 1.04070 1.22246 1.02798 1.02057 0.94781 1.50399 1.30330 1.05589 1.18055 1.78868 1.08798 1.22500 0.95529 1.75782 1.19975 0.98909 1.20227 1.24591 0.96489 0.96909 0.91631 1.19883 1.00393 0.87861 1.00624 1.20064 0.85783 0.81907 0.82232 1.90772 1.46267 1.71897 1.31338 1.46038 1.31761 1.16353 1.42942 1.21662 0.88416 0.91731 0.96049 0.89662 1.21675 0.99534 0.97404 0.96625 1.22178 0.96798 0.99023 0.99970 1.20847 0.99271 0.90198 0.85590 1.43988 1.37534 1.40347 1.09186 1.19211 1.32416 0.94555 0.91679 0.91675 1.24993 1.01514 0.94912 0.98214 1.70044 1.44786 0.96863 1.43151 0.86295 0.80836 0.77353 0.82451 1.21470 1.21518 1.20366 1.21088 0.90921 0.92368 0.94097 1.74549 1.24430 0.99242 1.16071 0.91527 0.89237 0.90367 0.90543 0.89334 0.90704 0.90242 0.89277 0.91180 0.86049 0.85843 0.77022 0.92175 0.92996 0.92679 0.92440 0.96288 0.89270 0.93697 0.92532 0.96486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.66 37.16 0.32 -0.65 16 2 C 0.18 1.51 1.30 -131.82 -0.17 1.34 16 3 C -0.15 -0.98 7.91 37.16 0.29 -0.69 16 4 C -0.16 -1.32 8.66 37.16 0.32 -1.00 16 5 N -0.13 -1.66 3.73 0.48 0.00 -1.65 16 6 N -0.06 -0.94 12.24 60.35 0.74 -0.20 16 7 N -0.28 -4.38 12.50 32.45 0.41 -3.98 16 8 C 0.19 2.71 6.86 -156.62 -1.07 1.63 16 9 C -0.04 -0.50 6.33 -29.03 -0.18 -0.68 16 10 C 0.52 7.95 7.79 -10.98 -0.09 7.87 16 11 O -0.53 -10.98 15.70 5.56 0.09 -10.89 16 12 N -0.72 -10.02 5.08 -53.90 -0.27 -10.29 16 13 C 0.13 2.29 2.59 -68.03 -0.18 2.11 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.11 -1.83 5.36 -26.69 -0.14 -1.97 16 16 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 17 C 0.17 3.96 5.32 -3.71 -0.02 3.94 16 18 N -0.59 -15.15 3.00 -172.58 -0.52 -15.67 16 19 C -0.25 -7.12 9.58 -15.06 -0.14 -7.27 16 20 H 0.07 1.89 7.89 -52.48 -0.41 1.47 16 21 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 22 N -0.90 -26.50 11.20 55.49 0.62 -25.88 16 23 Si 0.90 22.32 29.59 -169.99 -5.03 17.29 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.14 3.15 6.06 -3.93 -0.02 3.13 16 28 N -0.29 -4.16 11.83 32.46 0.38 -3.78 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.40 3.92 8.60 -40.82 -0.35 3.57 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 2.38 6.03 -51.93 -0.31 2.07 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.06 1.36 7.93 -51.93 -0.41 0.94 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -36.72 398.34 -7.12 -43.83 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.21 Total: 0.28 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.33 Total: 4.95 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 1.36 Total: -61.46 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.72 -7.12 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007399650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.725 kcal (2) G-P(sol) polarization free energy of solvation -36.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds