Wall clock time and date at job start Tue Mar 31 2020 19:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00390 * 2 1 4 4 C 1.52999 * 109.47363 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47281 * 180.02562 * 4 3 2 6 6 N 1.28442 * 125.18758 * 273.89483 * 5 4 3 7 7 C 1.30868 * 110.92983 * 179.97438 * 6 5 4 8 8 C 1.39681 * 107.85644 * 359.76946 * 7 6 5 9 9 C 1.36594 * 125.19488 * 93.86489 * 5 4 3 10 10 C 1.47165 * 126.88354 * 359.97438 * 9 5 4 11 11 O 1.21635 * 119.99680 * 354.97325 * 10 9 5 12 12 N 1.34772 * 120.00513 * 174.96949 * 10 9 5 13 13 C 1.46501 * 120.00383 * 184.70101 * 12 10 9 14 14 C 1.52999 * 109.46911 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.52613 * 54.92590 * 14 13 12 16 16 C 1.53040 * 109.49809 * 174.99975 * 14 13 12 17 17 C 1.53042 * 109.53063 * 181.31089 * 16 14 13 18 18 C 1.53191 * 109.31041 * 298.64107 * 17 16 14 19 19 N 1.46927 * 108.77419 * 54.63520 * 18 17 16 20 20 C 1.36939 * 120.62936 * 126.41072 * 19 18 17 21 21 H 1.08000 * 119.99861 * 211.41015 * 20 19 18 22 22 C 1.38816 * 120.00101 * 31.40878 * 20 19 18 23 23 N 1.31620 * 119.99780 * 10.64074 * 22 20 19 24 24 Si 1.86798 * 119.99934 * 190.64250 * 22 20 19 25 25 H 1.48507 * 109.46793 * 90.00230 * 24 22 20 26 26 H 1.48498 * 109.47173 * 209.99890 * 24 22 20 27 27 H 1.48498 * 109.47379 * 330.00012 * 24 22 20 28 28 C 1.46925 * 118.74125 * 306.38784 * 19 18 17 29 29 H 1.08996 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46981 * 299.99869 * 1 2 3 31 31 H 1.08996 * 109.46790 * 59.99794 * 1 2 3 32 32 H 1.09005 * 109.46794 * 59.99884 * 3 2 1 33 33 H 1.09002 * 109.46800 * 299.99818 * 3 2 1 34 34 H 1.08996 * 109.47232 * 59.99505 * 4 3 2 35 35 H 1.09002 * 109.46922 * 299.99631 * 4 3 2 36 36 H 1.07995 * 126.07183 * 180.02562 * 7 6 5 37 37 H 1.07992 * 127.31649 * 180.26980 * 8 7 6 38 38 H 0.97009 * 119.99586 * 4.70507 * 12 10 9 39 39 H 1.09002 * 109.46873 * 60.00279 * 13 12 10 40 40 H 1.08995 * 109.46810 * 299.99932 * 13 12 10 41 41 H 1.09004 * 109.45656 * 61.29439 * 16 14 13 42 42 H 1.09005 * 109.45813 * 301.32843 * 16 14 13 43 43 H 1.08997 * 109.49647 * 58.59565 * 17 16 14 44 44 H 1.08999 * 109.49349 * 178.68830 * 17 16 14 45 45 H 1.09003 * 109.58334 * 174.41848 * 18 17 16 46 46 H 1.08998 * 109.58810 * 294.70538 * 18 17 16 47 47 H 0.96999 * 119.99642 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.58551 * 173.39458 * 28 19 18 49 49 H 1.08992 * 109.58680 * 293.68142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 4.1315 2.5228 0.0000 6 7 4.3670 3.2286 -1.0470 7 6 4.9026 4.3784 -0.7248 8 6 5.0201 4.4215 0.6663 9 6 4.5209 3.2107 1.1140 10 6 4.4229 2.7580 2.5108 11 8 3.8719 1.7054 2.7717 12 7 4.9438 3.5094 3.5010 13 6 4.9382 3.0117 4.8788 14 6 5.5837 4.0499 5.7987 15 1 5.0766 5.0074 5.6798 16 6 5.4667 3.5871 7.2527 17 6 6.0831 4.6405 8.1761 18 6 7.5684 4.8035 7.8383 19 7 7.6973 5.1065 6.4064 20 6 8.3956 6.2070 5.9862 21 1 8.1034 6.7187 5.0811 22 6 9.4789 6.6648 6.7236 23 7 9.9659 5.9316 7.7022 24 14 10.2454 8.3215 6.3272 25 1 9.5736 9.3807 7.1224 26 1 11.6912 8.2914 6.6643 27 1 10.0805 8.6096 4.8797 28 6 7.0631 4.2061 5.4339 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 3.8568 0.6437 -0.8908 35 1 3.8575 0.6435 0.8892 36 1 5.1973 5.1575 -1.4122 37 1 5.4174 5.2275 1.2652 38 1 5.3223 4.3800 3.3012 39 1 5.5019 2.0802 4.9309 40 1 3.9110 2.8330 5.1964 41 1 5.9951 2.6418 7.3765 42 1 4.4155 3.4516 7.5072 43 1 5.5713 5.5924 8.0348 44 1 5.9787 4.3212 9.2130 45 1 7.9888 5.6210 8.4241 46 1 8.0989 3.8793 8.0675 47 1 10.7231 6.2514 8.2172 48 1 7.1500 4.6295 4.4333 49 1 7.5535 3.2332 5.4629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023437945.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:26 Heat of formation + Delta-G solvation = 12.313741 kcal Electronic energy + Delta-G solvation = -29286.712916 eV Core-core repulsion = 25251.200329 eV Total energy + Delta-G solvation = -4035.512587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.74495 -39.53939 -38.31642 -37.79684 -35.08187 -34.05109 -33.07630 -31.44110 -30.46420 -30.02319 -29.57682 -26.66738 -25.79425 -25.30029 -23.88188 -23.02002 -22.12654 -21.61642 -20.84610 -20.06809 -19.13526 -18.16571 -17.01769 -16.67460 -16.41894 -16.37199 -16.01191 -15.51658 -15.26946 -14.90296 -14.77275 -14.51343 -14.14830 -14.07502 -13.73095 -13.63780 -13.46632 -13.07982 -12.82536 -12.43480 -12.39759 -12.29346 -12.21164 -11.84998 -11.69050 -11.34772 -11.02086 -10.99117 -10.78785 -10.55846 -10.27855 -10.23858 -10.15499 -10.07654 -9.95066 -9.62113 -9.49557 -9.44851 -9.27603 -9.00306 -8.51068 -6.65925 -5.81740 -3.30679 1.06881 2.01096 2.42064 3.00218 3.15025 3.34269 3.40854 3.42119 3.61196 4.27313 4.43322 4.47882 4.55116 4.71498 4.89582 4.94500 4.98428 5.00249 5.05284 5.25625 5.29095 5.30262 5.36569 5.38340 5.42200 5.49171 5.57552 5.59536 5.77432 5.87438 5.94728 6.18179 6.24464 6.28652 6.33310 6.39026 6.46224 6.55899 6.66653 6.68575 6.73259 6.82713 6.92363 7.37211 7.38827 7.67691 7.75039 7.83771 8.04342 8.43829 9.18471 9.79804 10.38030 11.25998 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.002521 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.287824 B =11105.481611 C =12589.239246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.056 3.944 4 C 0.119 3.881 5 N -0.257 5.257 6 N -0.279 5.279 7 C 0.001 3.999 8 C -0.184 4.184 9 C -0.033 4.033 10 C 0.587 3.413 11 O -0.543 6.543 12 N -0.704 5.704 13 C 0.129 3.871 14 C -0.118 4.118 15 H 0.074 0.926 16 C -0.099 4.099 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.903 5.903 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.153 3.847 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.189 0.811 37 H 0.165 0.835 38 H 0.407 0.593 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.017 0.983 47 H 0.254 0.746 48 H 0.050 0.950 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.840 -6.644 -12.729 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.303 6.303 3 C -0.021 4.021 4 C -0.001 4.001 5 N -0.046 5.046 6 N -0.111 5.111 7 C -0.175 4.175 8 C -0.213 4.213 9 C -0.161 4.161 10 C 0.371 3.629 11 O -0.422 6.422 12 N -0.355 5.355 13 C 0.005 3.995 14 C -0.139 4.139 15 H 0.093 0.907 16 C -0.137 4.137 17 C -0.182 4.182 18 C 0.044 3.956 19 N -0.314 5.314 20 C -0.384 4.384 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.547 5.547 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.026 3.974 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.206 0.794 37 H 0.182 0.818 38 H 0.243 0.757 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -16.356 -8.327 -13.322 22.679 hybrid contribution 0.729 2.064 0.403 2.226 sum -15.627 -6.263 -12.919 21.221 Atomic orbital electron populations 1.22778 0.80106 1.03104 1.00246 1.87796 1.20397 1.26574 1.95533 1.22621 0.92529 0.85660 1.01340 1.21839 0.92529 0.78460 1.07283 1.45466 1.42667 1.14395 1.02106 1.73219 1.18267 1.05919 1.13686 1.23624 1.03148 0.95664 0.95086 1.22374 1.05735 0.97378 0.95792 1.21504 1.09503 0.95249 0.89885 1.16913 0.78861 0.84031 0.83049 1.90793 1.43931 1.23421 1.84029 1.45774 1.60439 1.21616 1.07717 1.21558 1.00995 0.97983 0.78929 1.21969 0.99583 0.97573 0.94754 0.90746 1.21339 0.99335 0.99186 0.93874 1.22187 1.00953 0.97824 0.97188 1.20808 0.89316 1.00098 0.85408 1.43996 1.60435 1.26514 1.00419 1.19150 1.06747 1.02981 1.09535 0.91829 1.25178 0.96195 0.98829 0.99237 1.69980 1.25340 1.36365 1.23058 0.86262 0.78398 0.83804 0.78088 1.21422 1.21695 1.20386 1.20907 0.89232 0.93880 0.93349 0.89134 0.93734 0.93925 0.92264 0.92555 0.87619 0.85482 0.79444 0.81767 0.75724 0.91213 0.91544 0.92430 0.93430 0.92782 0.93187 0.89448 0.96446 0.93568 0.93142 0.96307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.10 10.70 -35.23 -0.38 -4.48 16 3 C 0.06 0.59 6.26 37.16 0.23 0.82 16 4 C 0.12 1.32 6.23 -4.05 -0.03 1.30 16 5 N -0.26 -3.17 3.35 -57.15 -0.19 -3.36 16 6 N -0.28 -3.40 11.90 30.59 0.36 -3.03 16 7 C 0.00 0.01 12.03 -17.42 -0.21 -0.20 16 8 C -0.18 -1.96 10.50 -38.98 -0.41 -2.37 16 9 C -0.03 -0.42 6.96 -82.06 -0.57 -0.99 16 10 C 0.59 8.03 7.79 -12.64 -0.10 7.93 16 11 O -0.54 -8.63 14.68 5.25 0.08 -8.55 16 12 N -0.70 -8.92 5.32 -61.47 -0.33 -9.25 16 13 C 0.13 1.74 5.07 -4.04 -0.02 1.72 16 14 C -0.12 -1.82 2.37 -90.51 -0.21 -2.04 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 17 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 18 C 0.17 3.90 5.25 -3.71 -0.02 3.88 16 19 N -0.59 -14.07 2.99 -172.34 -0.51 -14.59 16 20 C -0.25 -6.66 9.58 -15.06 -0.14 -6.81 16 21 H 0.06 1.62 7.85 -52.49 -0.41 1.20 16 22 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 23 N -0.90 -25.61 11.05 55.49 0.61 -25.00 16 24 Si 0.90 21.07 29.57 -169.99 -5.03 16.05 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 C 0.15 2.95 5.60 -3.72 -0.02 2.92 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.13 1.56 6.20 -51.93 -0.32 1.24 16 36 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.16 1.39 7.58 -52.49 -0.40 0.99 16 38 H 0.41 4.63 6.74 -40.82 -0.28 4.35 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 2.28 6.11 -51.93 -0.32 1.96 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.05 0.92 7.14 -51.93 -0.37 0.55 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -31.53 395.95 -8.19 -39.72 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.99 Total: 3.39 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.78 Total: 3.13 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.06 Total: -55.23 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.30 Total: -13.03 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.53 -8.19 -39.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023437945.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.031 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds