Wall clock time and date at job start Tue Mar 31 2020 19:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00390 * 2 1 4 4 C 1.52999 * 109.47363 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47281 * 180.02562 * 4 3 2 6 6 N 1.28442 * 125.18758 * 273.89483 * 5 4 3 7 7 C 1.30868 * 110.92983 * 179.97438 * 6 5 4 8 8 C 1.39681 * 107.85644 * 359.76946 * 7 6 5 9 9 C 1.36594 * 125.19488 * 93.86489 * 5 4 3 10 10 C 1.47165 * 126.88354 * 359.97438 * 9 5 4 11 11 O 1.21635 * 119.99680 * 354.97325 * 10 9 5 12 12 N 1.34772 * 120.00513 * 174.96949 * 10 9 5 13 13 C 1.46501 * 120.00383 * 184.70101 * 12 10 9 14 14 C 1.52999 * 109.46911 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.52613 * 54.92590 * 14 13 12 16 16 C 1.53040 * 109.49809 * 174.99975 * 14 13 12 17 17 C 1.53042 * 109.53063 * 181.31089 * 16 14 13 18 18 C 1.53191 * 109.31041 * 298.64107 * 17 16 14 19 19 N 1.46927 * 108.77419 * 54.63520 * 18 17 16 20 20 C 1.36939 * 120.62936 * 126.41072 * 19 18 17 21 21 H 1.08000 * 119.99861 * 211.41015 * 20 19 18 22 22 C 1.38816 * 120.00101 * 31.40878 * 20 19 18 23 23 N 1.31620 * 119.99780 * 10.64074 * 22 20 19 24 24 Si 1.86798 * 119.99934 * 190.64250 * 22 20 19 25 25 H 1.48507 * 109.46793 * 90.00230 * 24 22 20 26 26 H 1.48498 * 109.47173 * 209.99890 * 24 22 20 27 27 H 1.48498 * 109.47379 * 330.00012 * 24 22 20 28 28 C 1.46925 * 118.74125 * 306.38784 * 19 18 17 29 29 H 1.08996 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46981 * 299.99869 * 1 2 3 31 31 H 1.08996 * 109.46790 * 59.99794 * 1 2 3 32 32 H 1.09005 * 109.46794 * 59.99884 * 3 2 1 33 33 H 1.09002 * 109.46800 * 299.99818 * 3 2 1 34 34 H 1.08996 * 109.47232 * 59.99505 * 4 3 2 35 35 H 1.09002 * 109.46922 * 299.99631 * 4 3 2 36 36 H 1.07995 * 126.07183 * 180.02562 * 7 6 5 37 37 H 1.07992 * 127.31649 * 180.26980 * 8 7 6 38 38 H 0.97009 * 119.99586 * 4.70507 * 12 10 9 39 39 H 1.09002 * 109.46873 * 60.00279 * 13 12 10 40 40 H 1.08995 * 109.46810 * 299.99932 * 13 12 10 41 41 H 1.09004 * 109.45656 * 61.29439 * 16 14 13 42 42 H 1.09005 * 109.45813 * 301.32843 * 16 14 13 43 43 H 1.08997 * 109.49647 * 58.59565 * 17 16 14 44 44 H 1.08999 * 109.49349 * 178.68830 * 17 16 14 45 45 H 1.09003 * 109.58334 * 174.41848 * 18 17 16 46 46 H 1.08998 * 109.58810 * 294.70538 * 18 17 16 47 47 H 0.96999 * 119.99642 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.58551 * 173.39458 * 28 19 18 49 49 H 1.08992 * 109.58680 * 293.68142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 4.1315 2.5228 0.0000 6 7 4.3670 3.2286 -1.0470 7 6 4.9026 4.3784 -0.7248 8 6 5.0201 4.4215 0.6663 9 6 4.5209 3.2107 1.1140 10 6 4.4229 2.7580 2.5108 11 8 3.8719 1.7054 2.7717 12 7 4.9438 3.5094 3.5010 13 6 4.9382 3.0117 4.8788 14 6 5.5837 4.0499 5.7987 15 1 5.0766 5.0074 5.6798 16 6 5.4667 3.5871 7.2527 17 6 6.0831 4.6405 8.1761 18 6 7.5684 4.8035 7.8383 19 7 7.6973 5.1065 6.4064 20 6 8.3956 6.2070 5.9862 21 1 8.1034 6.7187 5.0811 22 6 9.4789 6.6648 6.7236 23 7 9.9659 5.9316 7.7022 24 14 10.2454 8.3215 6.3272 25 1 9.5736 9.3807 7.1224 26 1 11.6912 8.2914 6.6643 27 1 10.0805 8.6096 4.8797 28 6 7.0631 4.2061 5.4339 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 3.8568 0.6437 -0.8908 35 1 3.8575 0.6435 0.8892 36 1 5.1973 5.1575 -1.4122 37 1 5.4174 5.2275 1.2652 38 1 5.3223 4.3800 3.3012 39 1 5.5019 2.0802 4.9309 40 1 3.9110 2.8330 5.1964 41 1 5.9951 2.6418 7.3765 42 1 4.4155 3.4516 7.5072 43 1 5.5713 5.5924 8.0348 44 1 5.9787 4.3212 9.2130 45 1 7.9888 5.6210 8.4241 46 1 8.0989 3.8793 8.0675 47 1 10.7231 6.2514 8.2172 48 1 7.1500 4.6295 4.4333 49 1 7.5535 3.2332 5.4629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023437945.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:25 Heat of formation + Delta-G solvation = -8.382191 kcal Electronic energy + Delta-G solvation = -29287.610359 eV Core-core repulsion = 25251.200329 eV Total energy + Delta-G solvation = -4036.410030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.60870 -40.65509 -39.27882 -39.05737 -36.37876 -35.06205 -34.56130 -32.61055 -32.24559 -31.28564 -30.36335 -27.36195 -27.24502 -26.93445 -24.76158 -24.06885 -23.69860 -22.75040 -22.04373 -21.18625 -20.50040 -19.15908 -18.56489 -17.81123 -17.32905 -17.17335 -16.94568 -16.84219 -16.46481 -16.29525 -15.75487 -15.63097 -15.41349 -15.21989 -15.02778 -14.82832 -14.52118 -14.47678 -13.97670 -13.90476 -13.71918 -13.58832 -13.14257 -13.01125 -12.79724 -12.63723 -12.50857 -12.37191 -12.27261 -11.92930 -11.88593 -11.80137 -11.54783 -11.39170 -11.12847 -11.03967 -10.83219 -10.51884 -10.42788 -10.14616 -10.00503 -8.59413 -7.82893 -5.34458 0.13978 1.16170 1.49896 1.50480 1.59169 1.59529 2.03133 2.15777 2.53044 2.86632 3.33070 3.45123 3.51119 3.63493 3.76393 3.93657 4.01003 4.03507 4.07699 4.09863 4.13488 4.41091 4.42171 4.43936 4.51286 4.55050 4.59273 4.61825 4.68392 4.77947 4.78719 4.84606 4.90542 4.93501 5.03555 5.14318 5.22338 5.34492 5.38513 5.46581 5.49494 5.61476 5.64589 5.70238 5.83560 5.97527 6.36064 6.45052 6.95572 7.04948 7.19391 7.89279 8.42333 9.22655 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.002521 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.287824 B =11105.481611 C =12589.239246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.067 3.933 4 C 0.119 3.881 5 N -0.265 5.265 6 N -0.295 5.295 7 C 0.002 3.998 8 C -0.175 4.175 9 C -0.056 4.056 10 C 0.588 3.412 11 O -0.570 6.570 12 N -0.698 5.698 13 C 0.140 3.860 14 C -0.100 4.100 15 H 0.080 0.920 16 C -0.097 4.097 17 C -0.131 4.131 18 C 0.173 3.827 19 N -0.610 5.610 20 C -0.257 4.257 21 H 0.073 0.927 22 C -0.053 4.053 23 N -0.939 5.939 24 Si 0.967 3.033 25 H -0.286 1.286 26 H -0.300 1.300 27 H -0.264 1.264 28 C 0.151 3.849 29 H 0.106 0.894 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.220 0.780 37 H 0.187 0.813 38 H 0.414 0.586 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.051 0.949 46 H -0.009 1.009 47 H 0.248 0.752 48 H 0.059 0.941 49 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.485 -5.832 -14.192 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.011 4.011 4 C -0.001 4.001 5 N -0.054 5.054 6 N -0.127 5.127 7 C -0.174 4.174 8 C -0.204 4.204 9 C -0.183 4.183 10 C 0.374 3.626 11 O -0.450 6.450 12 N -0.350 5.350 13 C 0.016 3.984 14 C -0.120 4.120 15 H 0.098 0.902 16 C -0.135 4.135 17 C -0.170 4.170 18 C 0.047 3.953 19 N -0.333 5.333 20 C -0.388 4.388 21 H 0.090 0.910 22 C -0.249 4.249 23 N -0.585 5.585 24 Si 0.796 3.204 25 H -0.213 1.213 26 H -0.227 1.227 27 H -0.188 1.188 28 C 0.026 3.974 29 H 0.125 0.875 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.237 0.763 37 H 0.204 0.796 38 H 0.251 0.749 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.009 0.991 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -18.031 -7.513 -14.808 24.512 hybrid contribution 1.234 1.781 0.819 2.316 sum -16.797 -5.732 -13.989 22.598 Atomic orbital electron populations 1.22998 0.78507 1.04462 1.00950 1.87770 1.22221 1.26667 1.95623 1.22480 0.92077 0.85636 1.00944 1.21825 0.93002 0.78316 1.06976 1.45559 1.43077 1.14687 1.02108 1.73217 1.18890 1.06728 1.13878 1.24229 1.01952 0.95628 0.95576 1.22726 1.04451 0.97006 0.96239 1.21521 1.11062 0.96323 0.89430 1.17058 0.78327 0.83606 0.83639 1.90781 1.45169 1.24562 1.84491 1.45676 1.60211 1.21824 1.07263 1.21369 1.01232 0.96825 0.78977 1.21720 0.96648 0.98484 0.95192 0.90200 1.21336 1.01038 0.97972 0.93154 1.22008 0.97122 0.98896 0.98944 1.20623 0.92315 0.97271 0.85050 1.44270 1.60701 1.26925 1.01391 1.19551 1.06354 1.03566 1.09313 0.90974 1.25943 0.97172 1.02120 0.99616 1.70159 1.25892 1.38035 1.24403 0.85261 0.76748 0.79918 0.78488 1.21302 1.22671 1.18829 1.21041 0.91211 0.92260 0.92906 0.87538 0.93611 0.92618 0.93578 0.91837 0.86567 0.87052 0.76307 0.79586 0.74851 0.91959 0.90340 0.92659 0.90087 0.92802 0.91445 0.93064 0.99093 0.94309 0.92272 0.97680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -8.40 10.70 -148.98 -1.59 -10.00 16 3 C 0.07 1.36 6.26 71.98 0.45 1.81 16 4 C 0.12 2.62 6.23 86.38 0.54 3.16 16 5 N -0.27 -6.30 3.35 -334.71 -1.12 -7.42 16 6 N -0.30 -6.71 11.90 -57.14 -0.68 -7.39 16 7 C 0.00 0.04 12.03 85.18 1.03 1.06 16 8 C -0.18 -3.32 10.50 22.66 0.24 -3.08 16 9 C -0.06 -1.33 6.96 40.79 0.28 -1.04 16 10 C 0.59 15.44 7.79 86.59 0.67 16.12 16 11 O -0.57 -17.84 14.68 -4.14 -0.06 -17.90 16 12 N -0.70 -16.37 5.32 -466.63 -2.48 -18.86 16 13 C 0.14 3.48 5.07 86.38 0.44 3.92 16 14 C -0.10 -2.87 2.37 -10.72 -0.03 -2.90 16 15 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 16 C -0.10 -2.80 5.17 30.62 0.16 -2.64 16 17 C -0.13 -4.58 6.08 30.67 0.19 -4.39 16 18 C 0.17 8.13 5.25 86.36 0.45 8.58 16 19 N -0.61 -29.06 2.99 -699.16 -2.09 -31.14 16 20 C -0.26 -13.45 9.58 84.03 0.81 -12.65 16 21 H 0.07 3.57 7.85 -2.91 -0.02 3.55 16 22 C -0.05 -2.91 5.05 84.86 0.43 -2.48 16 23 N -0.94 -54.87 11.05 21.65 0.24 -54.64 16 24 Si 0.97 43.57 29.57 68.60 2.03 45.60 16 25 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 28 C 0.15 5.69 5.60 86.35 0.48 6.17 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.11 2.80 6.20 -2.39 -0.01 2.78 16 36 H 0.22 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.19 2.54 7.58 -2.91 -0.02 2.52 16 38 H 0.41 8.43 6.74 -92.70 -0.62 7.81 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 2.76 6.11 -2.39 -0.01 2.75 16 46 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.06 2.08 7.14 -2.39 -0.02 2.06 16 49 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -69.33 395.95 1.95 -67.38 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.32 Total: 21.09 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 7.39 Total: 13.26 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.13 Total: -119.44 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.66 Total: -27.89 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -69.33 1.95 -67.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023437945.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.997 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds