Wall clock time and date at job start Tue Mar 31 2020 19:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99520 * 2 1 4 4 C 1.52995 * 109.46923 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47361 * 179.97438 * 4 3 2 6 6 N 1.28439 * 125.18663 * 264.75149 * 5 4 3 7 7 C 1.30865 * 110.92454 * 179.97438 * 6 5 4 8 8 C 1.39671 * 107.85882 * 359.77615 * 7 6 5 9 9 C 1.36591 * 125.18911 * 84.72586 * 5 4 3 10 10 C 1.47168 * 126.88675 * 359.97438 * 9 5 4 11 11 O 1.21633 * 119.99383 * 5.73715 * 10 9 5 12 12 N 1.34773 * 120.00416 * 185.73326 * 10 9 5 13 13 C 1.46501 * 120.00174 * 174.97746 * 12 10 9 14 14 C 1.53003 * 109.46973 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49268 * 305.06555 * 14 13 12 16 16 C 1.53038 * 109.49628 * 185.00287 * 14 13 12 17 17 C 1.53040 * 109.53952 * 178.64823 * 16 14 13 18 18 C 1.53197 * 109.31073 * 61.36379 * 17 16 14 19 19 N 1.46928 * 108.77517 * 305.36642 * 18 17 16 20 20 C 1.36932 * 120.62806 * 233.58503 * 19 18 17 21 21 H 1.07999 * 119.99796 * 151.22421 * 20 19 18 22 22 C 1.38811 * 120.00475 * 331.22322 * 20 19 18 23 23 N 1.31621 * 119.99850 * 341.82202 * 22 20 19 24 24 Si 1.86796 * 120.00412 * 161.81625 * 22 20 19 25 25 H 1.48505 * 109.46960 * 94.96908 * 24 22 20 26 26 H 1.48494 * 109.47552 * 214.96965 * 24 22 20 27 27 H 1.48501 * 109.47101 * 334.97665 * 24 22 20 28 28 C 1.46919 * 118.73940 * 53.85927 * 19 18 17 29 29 H 1.09000 * 109.47363 * 60.00268 * 1 2 3 30 30 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47598 * 300.00171 * 1 2 3 32 32 H 1.08996 * 109.47068 * 60.00035 * 3 2 1 33 33 H 1.09000 * 109.46535 * 299.99813 * 3 2 1 34 34 H 1.09008 * 109.47060 * 59.99786 * 4 3 2 35 35 H 1.09000 * 109.47516 * 300.00114 * 4 3 2 36 36 H 1.07999 * 126.06869 * 179.97438 * 7 6 5 37 37 H 1.08007 * 127.31766 * 180.26934 * 8 7 6 38 38 H 0.97008 * 119.99845 * 354.98781 * 12 10 9 39 39 H 1.08998 * 109.46591 * 60.00209 * 13 12 10 40 40 H 1.09000 * 109.46672 * 300.00045 * 13 12 10 41 41 H 1.09000 * 109.46270 * 58.62775 * 16 14 13 42 42 H 1.08998 * 109.44640 * 298.66785 * 16 14 13 43 43 H 1.09002 * 109.49853 * 301.41540 * 17 16 14 44 44 H 1.08993 * 109.52502 * 181.32932 * 17 16 14 45 45 H 1.09000 * 109.58511 * 185.58028 * 18 17 16 46 46 H 1.09005 * 109.70242 * 65.21978 * 18 17 16 47 47 H 0.96996 * 120.00076 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.58713 * 65.92621 * 28 19 18 49 49 H 1.09004 * 109.59378 * 186.34995 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 4.1312 2.5232 0.0000 6 7 4.5203 3.1596 -1.0455 7 6 5.0086 4.3307 -0.7251 8 6 4.9222 4.4658 0.6624 9 6 4.3572 3.2847 1.1112 10 6 4.0544 2.9244 2.5056 11 8 3.6464 1.8096 2.7707 12 7 4.2292 3.8295 3.4887 13 6 3.8248 3.5090 4.8599 14 6 4.1294 4.6986 5.7727 15 1 5.1817 4.9674 5.6808 16 6 3.8236 4.3204 7.2237 17 6 4.1599 5.4981 8.1413 18 6 3.2901 6.7007 7.7615 19 7 3.4691 6.9805 6.3303 20 6 3.8242 8.2322 5.9033 21 1 4.3893 8.3512 4.9906 22 6 3.4580 9.3480 6.6433 23 7 2.4920 9.2596 7.5329 24 14 4.3361 10.9750 6.3768 25 1 3.5663 11.8008 5.4121 26 1 4.4444 11.6967 7.6700 27 1 5.6957 10.7210 5.8362 28 6 3.2539 5.8935 5.3656 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6884 1.8463 -0.8900 34 1 3.8573 0.6437 -0.8892 35 1 3.8567 0.6441 0.8908 36 1 5.4048 5.0640 -1.4119 37 1 5.2318 5.3115 1.2585 38 1 4.6227 4.6933 3.2885 39 1 4.3756 2.6345 5.2060 40 1 2.7557 3.2979 4.8833 41 1 4.4236 3.4559 7.5079 42 1 2.7659 4.0756 7.3197 43 1 5.2119 5.7595 8.0272 44 1 3.9643 5.2204 9.1770 45 1 3.5939 7.5701 8.3446 46 1 2.2427 6.4744 7.9614 47 1 2.2358 10.0393 8.0498 48 1 2.2041 5.6003 5.3737 49 1 3.5337 6.2300 4.3673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023437946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:31 Heat of formation + Delta-G solvation = 12.674685 kcal Electronic energy + Delta-G solvation = -29430.939185 eV Core-core repulsion = 25395.442250 eV Total energy + Delta-G solvation = -4035.496935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.74551 -39.53595 -38.28042 -37.79509 -35.08466 -34.04762 -33.08157 -31.44917 -30.48529 -30.03576 -29.54532 -26.62636 -25.80536 -25.30187 -23.88747 -22.98236 -22.12957 -21.65496 -20.86949 -20.06333 -19.14284 -18.16243 -17.00187 -16.69603 -16.39744 -16.28787 -16.04780 -15.45256 -15.31724 -14.87569 -14.77689 -14.51152 -14.16387 -14.04868 -13.72882 -13.65478 -13.48368 -13.06763 -12.83781 -12.43376 -12.38555 -12.31486 -12.23158 -11.83387 -11.64938 -11.33744 -11.07551 -11.02108 -10.74645 -10.55717 -10.30688 -10.25356 -10.17660 -10.05086 -9.96479 -9.64536 -9.49014 -9.44395 -9.27611 -9.00659 -8.50656 -6.71382 -5.84252 -3.27227 1.07232 2.00236 2.43055 3.04989 3.10263 3.33401 3.41429 3.43064 3.64025 4.27759 4.43476 4.47838 4.57344 4.73578 4.91462 4.95825 5.02186 5.04825 5.06353 5.23464 5.30852 5.34886 5.37546 5.38368 5.40244 5.49205 5.56113 5.58566 5.75721 5.86275 5.92720 6.16793 6.23458 6.27832 6.30885 6.37939 6.46667 6.53832 6.64207 6.71260 6.71636 6.79970 6.89993 7.33577 7.37526 7.60817 7.74470 7.83795 8.04437 8.39752 9.15653 9.79243 10.36673 11.24154 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.002656 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.737226 B =10541.431301 C =11528.679766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.055 3.945 4 C 0.122 3.878 5 N -0.258 5.258 6 N -0.278 5.278 7 C 0.001 3.999 8 C -0.184 4.184 9 C -0.034 4.034 10 C 0.586 3.414 11 O -0.543 6.543 12 N -0.705 5.705 13 C 0.129 3.871 14 C -0.119 4.119 15 H 0.075 0.925 16 C -0.099 4.099 17 C -0.141 4.141 18 C 0.170 3.830 19 N -0.590 5.590 20 C -0.256 4.256 21 H 0.065 0.935 22 C 0.005 3.995 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.278 1.278 28 C 0.154 3.846 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.189 0.811 37 H 0.165 0.835 38 H 0.407 0.593 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.018 0.982 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 -14.542 -12.316 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.023 4.023 4 C 0.001 3.999 5 N -0.046 5.046 6 N -0.110 5.110 7 C -0.176 4.176 8 C -0.213 4.213 9 C -0.162 4.162 10 C 0.371 3.629 11 O -0.421 6.421 12 N -0.356 5.356 13 C 0.005 3.995 14 C -0.139 4.139 15 H 0.093 0.907 16 C -0.137 4.137 17 C -0.180 4.180 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.386 4.386 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.543 5.543 24 Si 0.729 3.271 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.027 3.973 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.206 0.794 37 H 0.182 0.818 38 H 0.243 0.757 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.134 -16.202 -12.898 20.740 hybrid contribution 0.484 2.194 0.472 2.296 sum 1.618 -14.008 -12.426 18.795 Atomic orbital electron populations 1.22786 0.80020 1.03090 1.00375 1.87780 1.20472 1.26496 1.95553 1.22634 0.92473 0.85751 1.01448 1.21791 0.92513 0.78473 1.07090 1.45471 1.42550 1.14355 1.02273 1.73227 1.15943 1.08282 1.13568 1.23621 1.03918 0.94850 0.95165 1.22376 1.05269 0.97777 0.95838 1.21507 1.10226 0.94475 0.90030 1.16916 0.78168 0.84775 0.83030 1.90801 1.47018 1.20514 1.83764 1.45772 1.62911 1.18470 1.08441 1.21553 1.00357 0.98328 0.79213 1.22056 1.01872 0.95206 0.94790 0.90662 1.21333 1.00754 0.97736 0.93902 1.22161 1.01314 0.97326 0.97241 1.20767 0.94874 0.94714 0.85254 1.44034 1.80378 1.06281 1.00581 1.19127 1.27858 0.82476 1.09132 0.91765 1.25058 0.96685 0.97700 1.00005 1.70052 1.27529 1.29456 1.27302 0.86327 0.79649 0.83880 0.77196 1.21445 1.21553 1.20360 1.20989 0.95101 0.87944 0.93297 0.93909 0.89141 0.93607 0.92095 0.92645 0.87444 0.85828 0.79435 0.81772 0.75729 0.91499 0.91313 0.93363 0.92451 0.92682 0.93140 0.89892 0.96382 0.93610 0.96346 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.25 10.70 -35.23 -0.38 -4.63 16 3 C 0.05 0.60 6.26 37.15 0.23 0.83 16 4 C 0.12 1.34 6.07 -4.04 -0.02 1.32 16 5 N -0.26 -3.17 3.35 -57.14 -0.19 -3.36 16 6 N -0.28 -3.39 11.90 30.59 0.36 -3.03 16 7 C 0.00 0.01 12.03 -17.43 -0.21 -0.20 16 8 C -0.18 -1.96 10.50 -38.99 -0.41 -2.37 16 9 C -0.03 -0.43 6.96 -82.06 -0.57 -1.00 16 10 C 0.59 7.99 7.79 -12.64 -0.10 7.89 16 11 O -0.54 -8.58 14.78 5.25 0.08 -8.50 16 12 N -0.70 -8.88 5.32 -61.46 -0.33 -9.21 16 13 C 0.13 1.73 5.07 -4.04 -0.02 1.71 16 14 C -0.12 -1.82 2.38 -90.27 -0.22 -2.03 16 15 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.10 -1.54 5.16 -26.69 -0.14 -1.67 16 17 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 18 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 19 N -0.59 -13.96 2.98 -172.05 -0.51 -14.48 16 20 C -0.26 -6.70 9.57 -15.06 -0.14 -6.85 16 21 H 0.06 1.63 7.89 -52.49 -0.41 1.21 16 22 C 0.00 0.12 4.87 -17.43 -0.08 0.04 16 23 N -0.90 -25.49 11.33 55.49 0.63 -24.86 16 24 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.15 2.93 5.63 -3.49 -0.02 2.91 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.12 1.48 6.51 -51.93 -0.34 1.14 16 36 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.16 1.39 7.59 -52.48 -0.40 0.99 16 38 H 0.41 4.61 6.75 -40.82 -0.28 4.33 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 2.14 6.15 -51.93 -0.32 1.82 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.92 7.16 -51.93 -0.37 0.55 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -31.50 396.50 -8.18 -39.68 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.02 Total: 3.34 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.77 Total: 3.13 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.04 Total: -54.94 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.30 Total: -13.13 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.50 -8.18 -39.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023437946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.356 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds