Wall clock time and date at job start Tue Mar 31 2020 19:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99520 * 2 1 4 4 C 1.52995 * 109.46923 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47361 * 179.97438 * 4 3 2 6 6 N 1.28439 * 125.18663 * 264.75149 * 5 4 3 7 7 C 1.30865 * 110.92454 * 179.97438 * 6 5 4 8 8 C 1.39671 * 107.85882 * 359.77615 * 7 6 5 9 9 C 1.36591 * 125.18911 * 84.72586 * 5 4 3 10 10 C 1.47168 * 126.88675 * 359.97438 * 9 5 4 11 11 O 1.21633 * 119.99383 * 5.73715 * 10 9 5 12 12 N 1.34773 * 120.00416 * 185.73326 * 10 9 5 13 13 C 1.46501 * 120.00174 * 174.97746 * 12 10 9 14 14 C 1.53003 * 109.46973 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49268 * 305.06555 * 14 13 12 16 16 C 1.53038 * 109.49628 * 185.00287 * 14 13 12 17 17 C 1.53040 * 109.53952 * 178.64823 * 16 14 13 18 18 C 1.53197 * 109.31073 * 61.36379 * 17 16 14 19 19 N 1.46928 * 108.77517 * 305.36642 * 18 17 16 20 20 C 1.36932 * 120.62806 * 233.58503 * 19 18 17 21 21 H 1.07999 * 119.99796 * 151.22421 * 20 19 18 22 22 C 1.38811 * 120.00475 * 331.22322 * 20 19 18 23 23 N 1.31621 * 119.99850 * 341.82202 * 22 20 19 24 24 Si 1.86796 * 120.00412 * 161.81625 * 22 20 19 25 25 H 1.48505 * 109.46960 * 94.96908 * 24 22 20 26 26 H 1.48494 * 109.47552 * 214.96965 * 24 22 20 27 27 H 1.48501 * 109.47101 * 334.97665 * 24 22 20 28 28 C 1.46919 * 118.73940 * 53.85927 * 19 18 17 29 29 H 1.09000 * 109.47363 * 60.00268 * 1 2 3 30 30 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47598 * 300.00171 * 1 2 3 32 32 H 1.08996 * 109.47068 * 60.00035 * 3 2 1 33 33 H 1.09000 * 109.46535 * 299.99813 * 3 2 1 34 34 H 1.09008 * 109.47060 * 59.99786 * 4 3 2 35 35 H 1.09000 * 109.47516 * 300.00114 * 4 3 2 36 36 H 1.07999 * 126.06869 * 179.97438 * 7 6 5 37 37 H 1.08007 * 127.31766 * 180.26934 * 8 7 6 38 38 H 0.97008 * 119.99845 * 354.98781 * 12 10 9 39 39 H 1.08998 * 109.46591 * 60.00209 * 13 12 10 40 40 H 1.09000 * 109.46672 * 300.00045 * 13 12 10 41 41 H 1.09000 * 109.46270 * 58.62775 * 16 14 13 42 42 H 1.08998 * 109.44640 * 298.66785 * 16 14 13 43 43 H 1.09002 * 109.49853 * 301.41540 * 17 16 14 44 44 H 1.08993 * 109.52502 * 181.32932 * 17 16 14 45 45 H 1.09000 * 109.58511 * 185.58028 * 18 17 16 46 46 H 1.09005 * 109.70242 * 65.21978 * 18 17 16 47 47 H 0.96996 * 120.00076 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.58713 * 65.92621 * 28 19 18 49 49 H 1.09004 * 109.59378 * 186.34995 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 4.1312 2.5232 0.0000 6 7 4.5203 3.1596 -1.0455 7 6 5.0086 4.3307 -0.7251 8 6 4.9222 4.4658 0.6624 9 6 4.3572 3.2847 1.1112 10 6 4.0544 2.9244 2.5056 11 8 3.6464 1.8096 2.7707 12 7 4.2292 3.8295 3.4887 13 6 3.8248 3.5090 4.8599 14 6 4.1294 4.6986 5.7727 15 1 5.1817 4.9674 5.6808 16 6 3.8236 4.3204 7.2237 17 6 4.1599 5.4981 8.1413 18 6 3.2901 6.7007 7.7615 19 7 3.4691 6.9805 6.3303 20 6 3.8242 8.2322 5.9033 21 1 4.3893 8.3512 4.9906 22 6 3.4580 9.3480 6.6433 23 7 2.4920 9.2596 7.5329 24 14 4.3361 10.9750 6.3768 25 1 3.5663 11.8008 5.4121 26 1 4.4444 11.6967 7.6700 27 1 5.6957 10.7210 5.8362 28 6 3.2539 5.8935 5.3656 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6884 1.8463 -0.8900 34 1 3.8573 0.6437 -0.8892 35 1 3.8567 0.6441 0.8908 36 1 5.4048 5.0640 -1.4119 37 1 5.2318 5.3115 1.2585 38 1 4.6227 4.6933 3.2885 39 1 4.3756 2.6345 5.2060 40 1 2.7557 3.2979 4.8833 41 1 4.4236 3.4559 7.5079 42 1 2.7659 4.0756 7.3197 43 1 5.2119 5.7595 8.0272 44 1 3.9643 5.2204 9.1770 45 1 3.5939 7.5701 8.3446 46 1 2.2427 6.4744 7.9614 47 1 2.2358 10.0393 8.0498 48 1 2.2041 5.6003 5.3737 49 1 3.5337 6.2300 4.3673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023437946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:29 Heat of formation + Delta-G solvation = -7.982201 kcal Electronic energy + Delta-G solvation = -29431.834935 eV Core-core repulsion = 25395.442250 eV Total energy + Delta-G solvation = -4036.392685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.60984 -40.64676 -39.27658 -39.06259 -36.37640 -35.06181 -34.56471 -32.61731 -32.25822 -31.28797 -30.35925 -27.37089 -27.24664 -26.93553 -24.79318 -24.03962 -23.68509 -22.78028 -22.06506 -21.18729 -20.49261 -19.15731 -18.55524 -17.84495 -17.27049 -17.18839 -17.01264 -16.79189 -16.42798 -16.32976 -15.79091 -15.63166 -15.43259 -15.22822 -15.02897 -14.81879 -14.52260 -14.48215 -13.99802 -13.90939 -13.73455 -13.59357 -13.14545 -12.97549 -12.87266 -12.63983 -12.48679 -12.38525 -12.25016 -11.96640 -11.88865 -11.80686 -11.56397 -11.40408 -11.12293 -11.04020 -10.85243 -10.51265 -10.42084 -10.14829 -10.00379 -8.64361 -7.85059 -5.30468 0.14231 1.14809 1.48383 1.50972 1.60111 1.60769 2.06325 2.12432 2.53451 2.85338 3.30344 3.45816 3.50990 3.62941 3.75452 3.92900 4.00231 4.02775 4.07021 4.08885 4.13848 4.40172 4.40638 4.42771 4.50412 4.54731 4.58171 4.61033 4.67486 4.76686 4.77936 4.84357 4.89737 4.92146 5.02492 5.13527 5.21607 5.33872 5.37596 5.45831 5.49156 5.59041 5.64548 5.69949 5.79856 5.95208 6.36113 6.42131 6.95534 7.05299 7.17477 7.89013 8.41586 9.21361 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.002656 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.737226 B =10541.431301 C =11528.679766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.064 3.936 4 C 0.123 3.877 5 N -0.266 5.266 6 N -0.295 5.295 7 C 0.002 3.998 8 C -0.176 4.176 9 C -0.056 4.056 10 C 0.588 3.412 11 O -0.569 6.569 12 N -0.699 5.699 13 C 0.140 3.860 14 C -0.100 4.100 15 H 0.080 0.920 16 C -0.097 4.097 17 C -0.129 4.129 18 C 0.173 3.827 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.073 0.927 22 C -0.052 4.052 23 N -0.936 5.936 24 Si 0.963 3.037 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.265 1.265 28 C 0.152 3.848 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.220 0.780 37 H 0.187 0.813 38 H 0.414 0.586 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.047 0.953 46 H -0.008 1.008 47 H 0.248 0.752 48 H 0.005 0.995 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 -15.145 -13.641 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.014 4.014 4 C 0.003 3.997 5 N -0.055 5.055 6 N -0.127 5.127 7 C -0.174 4.174 8 C -0.204 4.204 9 C -0.184 4.184 10 C 0.373 3.627 11 O -0.449 6.449 12 N -0.350 5.350 13 C 0.016 3.984 14 C -0.121 4.121 15 H 0.098 0.902 16 C -0.135 4.135 17 C -0.168 4.168 18 C 0.048 3.952 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.090 0.910 22 C -0.247 4.247 23 N -0.582 5.582 24 Si 0.791 3.209 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.190 1.190 28 C 0.026 3.974 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.237 0.763 37 H 0.204 0.796 38 H 0.251 0.749 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.010 0.990 47 H 0.057 0.943 48 H 0.023 0.977 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.620 -16.822 -14.244 22.198 hybrid contribution -0.021 2.368 0.837 2.512 sum 2.600 -14.454 -13.408 19.886 Atomic orbital electron populations 1.22995 0.78603 1.04501 1.00831 1.87758 1.22096 1.26498 1.95602 1.22502 0.92480 0.85709 1.00716 1.21779 0.92515 0.78361 1.07090 1.45566 1.42973 1.14652 1.02274 1.73225 1.16500 1.09161 1.13780 1.24226 1.02852 0.94678 0.95647 1.22729 1.03907 0.97527 0.96276 1.21527 1.11711 0.95552 0.89597 1.17057 0.77599 0.84397 0.83602 1.90788 1.48268 1.21622 1.84222 1.45678 1.62678 1.18671 1.08007 1.21368 1.00153 0.97610 0.79259 1.21807 1.01005 0.94057 0.95203 0.90159 1.21333 1.01335 0.97637 0.93195 1.21987 0.99913 0.96015 0.98930 1.20604 0.94308 0.95441 0.84895 1.44310 1.80537 1.06708 1.01577 1.19535 1.26884 0.83607 1.08953 0.90969 1.25810 0.97576 1.00924 1.00414 1.70208 1.29364 1.29930 1.28744 0.85327 0.79025 0.79987 0.76514 1.21472 1.22354 1.18968 1.21129 0.95217 0.88147 0.92917 0.92688 0.87332 0.93903 0.93938 0.92093 0.86101 0.87078 0.76302 0.79600 0.74869 0.90341 0.92012 0.90048 0.92643 0.92690 0.91350 0.93472 0.98986 0.94291 0.97683 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -8.71 10.70 -148.98 -1.59 -10.30 16 3 C 0.06 1.39 6.26 71.98 0.45 1.84 16 4 C 0.12 2.68 6.07 86.38 0.52 3.20 16 5 N -0.27 -6.29 3.35 -334.68 -1.12 -7.41 16 6 N -0.29 -6.70 11.90 -57.14 -0.68 -7.38 16 7 C 0.00 0.03 12.03 85.18 1.02 1.06 16 8 C -0.18 -3.32 10.50 22.66 0.24 -3.08 16 9 C -0.06 -1.34 6.96 40.79 0.28 -1.05 16 10 C 0.59 15.38 7.79 86.59 0.67 16.06 16 11 O -0.57 -17.72 14.78 -4.13 -0.06 -17.78 16 12 N -0.70 -16.33 5.32 -466.62 -2.48 -18.81 16 13 C 0.14 3.46 5.07 86.38 0.44 3.90 16 14 C -0.10 -2.86 2.38 -10.57 -0.03 -2.88 16 15 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 16 C -0.10 -2.77 5.16 30.62 0.16 -2.61 16 17 C -0.13 -4.48 6.08 30.67 0.19 -4.29 16 18 C 0.17 8.06 5.30 86.36 0.46 8.51 16 19 N -0.61 -28.80 2.98 -698.25 -2.08 -30.88 16 20 C -0.26 -13.54 9.57 84.03 0.80 -12.73 16 21 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 22 C -0.05 -2.82 4.87 84.86 0.41 -2.40 16 23 N -0.94 -54.66 11.33 21.65 0.25 -54.42 16 24 Si 0.96 43.43 29.59 68.60 2.03 45.46 16 25 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 C 0.15 5.65 5.63 86.51 0.49 6.14 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 1.23 8.14 -2.38 -0.02 1.22 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 2.21 8.14 -2.38 -0.02 2.20 16 35 H 0.11 2.69 6.51 -2.39 -0.02 2.68 16 36 H 0.22 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.19 2.55 7.59 -2.91 -0.02 2.53 16 38 H 0.41 8.42 6.75 -92.70 -0.63 7.79 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.05 2.51 6.15 -2.39 -0.01 2.50 16 46 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 47 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 48 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.06 2.07 7.16 -2.39 -0.02 2.05 16 Total: -1.00 -69.13 396.50 1.94 -67.20 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.32 Total: 21.02 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 7.36 Total: 13.31 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -6.12 Total: -118.90 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.66 Total: -28.08 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -69.13 1.94 -67.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023437946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.218 kcal (2) G-P(sol) polarization free energy of solvation -69.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds