Wall clock time and date at job start Tue Mar 31 2020 20:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47005 * 240.00138 * 2 1 3 5 5 N 1.46492 * 109.47065 * 120.00010 * 2 1 3 6 6 N 1.28729 * 125.31929 * 239.95902 * 5 2 1 7 7 N 1.28984 * 108.98655 * 179.76367 * 6 5 2 8 8 C 1.34184 * 107.25344 * 0.42989 * 7 6 5 9 9 C 1.48005 * 126.70247 * 179.83430 * 8 7 6 10 10 O 1.21526 * 120.00441 * 179.68901 * 9 8 7 11 11 N 1.34779 * 119.99519 * 359.69285 * 9 8 7 12 12 C 1.46504 * 119.99774 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46847 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.70027 * 59.62414 * 13 12 11 15 15 C 1.53627 * 109.66493 * 180.21666 * 13 12 11 16 16 C 1.53036 * 109.24423 * 174.55013 * 15 13 12 17 17 C 1.53043 * 109.53514 * 298.51263 * 16 15 13 18 18 C 1.53186 * 109.31452 * 61.36612 * 17 16 15 19 19 N 1.46923 * 109.58813 * 299.26740 * 13 12 11 20 20 C 1.36936 * 120.63258 * 6.63251 * 19 13 12 21 21 H 1.08005 * 119.99509 * 341.10545 * 20 19 13 22 22 C 1.38810 * 120.00647 * 161.11073 * 20 19 13 23 23 N 1.31622 * 120.00206 * 140.79820 * 22 20 19 24 24 Si 1.86806 * 119.99644 * 320.80260 * 22 20 19 25 25 H 1.48495 * 109.46797 * 274.76984 * 24 22 20 26 26 H 1.48491 * 109.47025 * 34.77349 * 24 22 20 27 27 H 1.48497 * 109.47141 * 154.77396 * 24 22 20 28 28 N 1.28870 * 125.32231 * 60.00637 * 5 2 1 29 29 H 1.08998 * 109.47496 * 299.99726 * 1 2 3 30 30 H 1.08998 * 109.47194 * 60.00388 * 1 2 3 31 31 H 1.09003 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47272 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46988 * 300.00531 * 3 2 1 34 34 H 1.09003 * 109.47185 * 59.99600 * 3 2 1 35 35 H 1.08999 * 109.47609 * 299.99580 * 4 2 1 36 36 H 1.09003 * 109.47214 * 59.99968 * 4 2 1 37 37 H 1.09005 * 109.46992 * 179.97438 * 4 2 1 38 38 H 0.97004 * 120.00181 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.47059 * 60.00626 * 12 11 9 40 40 H 1.08996 * 109.47273 * 300.00152 * 12 11 9 41 41 H 1.08997 * 109.62884 * 54.55546 * 15 13 12 42 42 H 1.08996 * 109.45310 * 294.43441 * 15 13 12 43 43 H 1.09000 * 109.45910 * 178.48808 * 16 15 13 44 44 H 1.09000 * 109.44900 * 58.52428 * 16 15 13 45 45 H 1.09003 * 109.49828 * 301.40977 * 17 16 15 46 46 H 1.09002 * 109.52249 * 181.33289 * 17 16 15 47 47 H 1.08998 * 109.58340 * 185.57506 * 18 17 16 48 48 H 1.08999 * 109.70384 * 65.22099 * 18 17 16 49 49 H 0.97001 * 119.99670 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1961 6 7 2.7621 -0.1663 2.1066 7 7 2.9994 -1.0506 3.0152 8 6 2.3785 -2.1803 2.6428 9 6 2.3712 -3.4676 3.3732 10 8 1.7600 -4.4174 2.9245 11 7 3.0422 -3.5864 4.5360 12 6 3.0345 -4.8604 5.2593 13 6 3.8661 -4.7267 6.5366 14 1 3.4462 -3.9439 7.1681 15 6 3.8655 -6.0621 7.2960 16 6 4.8077 -5.9595 8.4976 17 6 6.2317 -5.6841 8.0092 18 6 6.2603 -4.3499 7.2571 19 7 5.2527 -4.3879 6.1884 20 6 5.5982 -4.1071 4.8935 21 1 4.9557 -4.4192 4.0834 22 6 6.7742 -3.4214 4.6219 23 7 7.5123 -3.7646 3.5875 24 14 7.3093 -2.0117 5.7246 25 1 6.6489 -0.7580 5.2807 26 1 6.9213 -2.3058 7.1274 27 1 8.7832 -1.8507 5.6421 28 7 1.7711 -1.9181 1.5009 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 3.5297 -2.8282 4.8943 39 1 3.4620 -5.6393 4.6278 40 1 2.0094 -5.1248 5.5186 41 1 4.2046 -6.8595 6.6348 42 1 2.8559 -6.2819 7.6431 43 1 4.7895 -6.8964 9.0544 44 1 4.4823 -5.1456 9.1455 45 1 6.5486 -6.4852 7.3414 46 1 6.9067 -5.6346 8.8637 47 1 7.2481 -4.1965 6.8227 48 1 6.0331 -3.5354 7.9448 49 1 8.3342 -3.2856 3.3980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024448256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:21 Heat of formation + Delta-G solvation = 126.598358 kcal Electronic energy + Delta-G solvation = -30531.396088 eV Core-core repulsion = 26533.132005 eV Total energy + Delta-G solvation = -3998.264083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.20268 -39.32948 -37.97787 -37.62352 -34.44873 -33.30221 -32.99674 -32.36373 -30.87732 -30.57576 -27.95680 -27.88978 -26.61824 -25.22767 -24.35711 -23.79414 -22.64206 -20.88348 -20.74739 -20.19358 -19.35764 -17.80449 -17.22198 -16.84018 -16.25434 -15.62756 -15.52672 -14.87404 -14.56024 -14.54546 -13.93861 -13.90272 -13.67994 -13.62044 -13.50325 -13.18504 -13.12391 -12.83603 -12.69871 -12.47436 -12.18847 -12.07902 -12.06620 -12.01185 -11.79677 -11.67182 -11.42118 -11.34671 -10.85014 -10.79022 -10.70034 -10.46975 -10.42917 -10.16788 -10.14514 -9.92677 -9.86510 -9.56359 -9.16077 -8.47395 -8.29546 -7.06363 -5.99450 -3.13042 1.24021 1.77888 1.79915 3.24045 3.45751 3.54921 3.58462 3.64886 3.95448 4.19559 4.29399 4.41356 4.61960 4.76802 4.85135 5.06627 5.08948 5.12653 5.25001 5.27106 5.31544 5.31863 5.32388 5.48013 5.53427 5.58106 5.62095 5.72823 5.77064 5.80697 5.88512 5.95806 5.98046 6.13923 6.23040 6.24428 6.27229 6.45490 6.48402 6.53961 6.64469 6.78586 6.87702 6.93096 7.10412 7.90683 7.97026 8.31766 8.44149 8.60701 8.96005 9.77733 10.14031 11.12874 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.003556 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.825507 B = 7871.460123 C = 8979.822706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.178 3.822 3 C -0.153 4.153 4 C -0.161 4.161 5 N -0.132 5.132 6 N -0.061 5.061 7 N -0.245 5.245 8 C 0.138 3.862 9 C 0.611 3.389 10 O -0.530 6.530 11 N -0.671 5.671 12 C 0.133 3.867 13 C 0.163 3.837 14 H 0.038 0.962 15 C -0.127 4.127 16 C -0.108 4.108 17 C -0.140 4.140 18 C 0.147 3.853 19 N -0.598 5.598 20 C -0.284 4.284 21 H 0.096 0.904 22 C 0.044 3.956 23 N -0.874 5.874 24 Si 0.815 3.185 25 H -0.288 1.288 26 H -0.250 1.250 27 H -0.299 1.299 28 N -0.252 5.252 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.421 0.579 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.027 0.973 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.728 6.653 -3.191 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.097 3.903 3 C -0.211 4.211 4 C -0.219 4.219 5 N -0.046 5.046 6 N -0.054 5.054 7 N -0.119 5.119 8 C -0.146 4.146 9 C 0.390 3.610 10 O -0.405 6.405 11 N -0.323 5.323 12 C 0.010 3.990 13 C 0.056 3.944 14 H 0.055 0.945 15 C -0.167 4.167 16 C -0.145 4.145 17 C -0.179 4.179 18 C 0.021 3.979 19 N -0.323 5.323 20 C -0.410 4.410 21 H 0.114 0.886 22 C -0.157 4.157 23 N -0.514 5.514 24 Si 0.642 3.358 25 H -0.216 1.216 26 H -0.175 1.175 27 H -0.226 1.226 28 N -0.105 5.105 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.260 0.740 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.881 6.580 -3.765 14.946 hybrid contribution 0.813 0.913 0.661 1.390 sum -12.068 7.493 -3.104 14.541 Atomic orbital electron populations 1.22239 0.90844 1.04690 1.03918 1.21419 0.96144 0.93058 0.79677 1.22095 1.03417 0.91423 1.04156 1.22260 1.02762 1.02090 0.94828 1.50674 1.30117 1.05585 1.18225 1.78886 1.08532 1.22384 0.95580 1.76239 1.18328 0.98239 1.19096 1.25406 0.98817 0.97305 0.93096 1.16064 0.80546 0.83113 0.81253 1.90784 1.44625 1.37565 1.67509 1.45771 1.49109 1.16276 1.21096 1.21456 0.98780 0.85502 0.93269 1.20806 0.85912 0.94815 0.92838 0.94466 1.21997 0.98412 0.98778 0.97496 1.21361 0.95972 1.00215 0.96987 1.22086 0.95703 1.00771 0.99334 1.21405 0.93458 0.93276 0.89728 1.44428 1.01899 1.80657 1.05332 1.18947 1.06908 1.32731 0.82427 0.88625 1.24962 0.95636 0.99596 0.95549 1.70184 1.12076 1.38090 1.31040 0.88151 0.76877 0.87264 0.83538 1.21583 1.17516 1.22596 1.74935 1.21595 0.98684 1.15299 0.91388 0.89191 0.90249 0.90410 0.89308 0.90561 0.90199 0.89197 0.91142 0.74045 0.90322 0.91673 0.91442 0.92584 0.93169 0.92810 0.91834 0.93173 0.91597 0.95526 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.66 37.16 0.32 -0.89 16 2 C 0.18 1.75 1.30 -131.82 -0.17 1.58 16 3 C -0.15 -1.18 7.90 37.16 0.29 -0.89 16 4 C -0.16 -1.40 8.66 37.16 0.32 -1.08 16 5 N -0.13 -1.99 3.72 0.52 0.00 -1.99 16 6 N -0.06 -1.06 12.21 60.35 0.74 -0.32 16 7 N -0.24 -4.90 12.26 32.10 0.39 -4.51 16 8 C 0.14 2.76 8.14 -156.24 -1.27 1.49 16 9 C 0.61 12.73 7.84 -12.26 -0.10 12.64 16 10 O -0.53 -11.93 17.10 5.34 0.09 -11.84 16 11 N -0.67 -13.38 3.63 -61.20 -0.22 -13.61 16 12 C 0.13 2.45 4.42 -4.04 -0.02 2.43 16 13 C 0.16 2.96 3.02 -67.37 -0.20 2.75 16 14 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 15 C -0.13 -1.98 5.40 -26.39 -0.14 -2.12 16 16 C -0.11 -1.61 5.88 -26.69 -0.16 -1.77 16 17 C -0.14 -2.42 6.08 -26.61 -0.16 -2.59 16 18 C 0.15 3.08 4.25 -3.71 -0.02 3.06 16 19 N -0.60 -13.19 2.83 -164.52 -0.47 -13.66 16 20 C -0.28 -7.36 7.73 -15.06 -0.12 -7.48 16 21 H 0.10 2.67 5.44 -52.48 -0.29 2.38 16 22 C 0.04 1.23 4.86 -17.43 -0.08 1.15 16 23 N -0.87 -26.24 13.97 55.49 0.78 -25.46 16 24 Si 0.81 20.54 26.41 -169.99 -4.49 16.05 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.25 -5.82 4.48 56.52 0.25 -5.57 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 N -0.25 -4.51 11.85 32.11 0.38 -4.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.42 8.75 7.19 -40.82 -0.29 8.46 16 39 H 0.08 1.62 7.50 -51.93 -0.39 1.23 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.53 4.99 -51.93 -0.26 1.27 16 48 H 0.03 0.56 6.83 -51.93 -0.35 0.20 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -33.16 385.48 -6.54 -39.70 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.05 Total: 5.68 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.50 Total: 8.28 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: 1.60 Total: -63.68 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.49 Total: 16.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.16 -6.54 -39.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024448256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.301 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds