Wall clock time and date at job start Tue Mar 31 2020 20:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47005 * 240.00138 * 2 1 3 5 5 N 1.46492 * 109.47065 * 120.00010 * 2 1 3 6 6 N 1.28729 * 125.31929 * 239.95902 * 5 2 1 7 7 N 1.28984 * 108.98655 * 179.76367 * 6 5 2 8 8 C 1.34184 * 107.25344 * 0.42989 * 7 6 5 9 9 C 1.48005 * 126.70247 * 179.83430 * 8 7 6 10 10 O 1.21526 * 120.00441 * 179.68901 * 9 8 7 11 11 N 1.34779 * 119.99519 * 359.69285 * 9 8 7 12 12 C 1.46504 * 119.99774 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46847 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.70027 * 59.62414 * 13 12 11 15 15 C 1.53627 * 109.66493 * 180.21666 * 13 12 11 16 16 C 1.53036 * 109.24423 * 174.55013 * 15 13 12 17 17 C 1.53043 * 109.53514 * 298.51263 * 16 15 13 18 18 C 1.53186 * 109.31452 * 61.36612 * 17 16 15 19 19 N 1.46923 * 109.58813 * 299.26740 * 13 12 11 20 20 C 1.36936 * 120.63258 * 6.63251 * 19 13 12 21 21 H 1.08005 * 119.99509 * 341.10545 * 20 19 13 22 22 C 1.38810 * 120.00647 * 161.11073 * 20 19 13 23 23 N 1.31622 * 120.00206 * 140.79820 * 22 20 19 24 24 Si 1.86806 * 119.99644 * 320.80260 * 22 20 19 25 25 H 1.48495 * 109.46797 * 274.76984 * 24 22 20 26 26 H 1.48491 * 109.47025 * 34.77349 * 24 22 20 27 27 H 1.48497 * 109.47141 * 154.77396 * 24 22 20 28 28 N 1.28870 * 125.32231 * 60.00637 * 5 2 1 29 29 H 1.08998 * 109.47496 * 299.99726 * 1 2 3 30 30 H 1.08998 * 109.47194 * 60.00388 * 1 2 3 31 31 H 1.09003 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47272 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46988 * 300.00531 * 3 2 1 34 34 H 1.09003 * 109.47185 * 59.99600 * 3 2 1 35 35 H 1.08999 * 109.47609 * 299.99580 * 4 2 1 36 36 H 1.09003 * 109.47214 * 59.99968 * 4 2 1 37 37 H 1.09005 * 109.46992 * 179.97438 * 4 2 1 38 38 H 0.97004 * 120.00181 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.47059 * 60.00626 * 12 11 9 40 40 H 1.08996 * 109.47273 * 300.00152 * 12 11 9 41 41 H 1.08997 * 109.62884 * 54.55546 * 15 13 12 42 42 H 1.08996 * 109.45310 * 294.43441 * 15 13 12 43 43 H 1.09000 * 109.45910 * 178.48808 * 16 15 13 44 44 H 1.09000 * 109.44900 * 58.52428 * 16 15 13 45 45 H 1.09003 * 109.49828 * 301.40977 * 17 16 15 46 46 H 1.09002 * 109.52249 * 181.33289 * 17 16 15 47 47 H 1.08998 * 109.58340 * 185.57506 * 18 17 16 48 48 H 1.08999 * 109.70384 * 65.22099 * 18 17 16 49 49 H 0.97001 * 119.99670 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1961 6 7 2.7621 -0.1663 2.1066 7 7 2.9994 -1.0506 3.0152 8 6 2.3785 -2.1803 2.6428 9 6 2.3712 -3.4676 3.3732 10 8 1.7600 -4.4174 2.9245 11 7 3.0422 -3.5864 4.5360 12 6 3.0345 -4.8604 5.2593 13 6 3.8661 -4.7267 6.5366 14 1 3.4462 -3.9439 7.1681 15 6 3.8655 -6.0621 7.2960 16 6 4.8077 -5.9595 8.4976 17 6 6.2317 -5.6841 8.0092 18 6 6.2603 -4.3499 7.2571 19 7 5.2527 -4.3879 6.1884 20 6 5.5982 -4.1071 4.8935 21 1 4.9557 -4.4192 4.0834 22 6 6.7742 -3.4214 4.6219 23 7 7.5123 -3.7646 3.5875 24 14 7.3093 -2.0117 5.7246 25 1 6.6489 -0.7580 5.2807 26 1 6.9213 -2.3058 7.1274 27 1 8.7832 -1.8507 5.6421 28 7 1.7711 -1.9181 1.5009 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 3.5297 -2.8282 4.8943 39 1 3.4620 -5.6393 4.6278 40 1 2.0094 -5.1248 5.5186 41 1 4.2046 -6.8595 6.6348 42 1 2.8559 -6.2819 7.6431 43 1 4.7895 -6.8964 9.0544 44 1 4.4823 -5.1456 9.1455 45 1 6.5486 -6.4852 7.3414 46 1 6.9067 -5.6346 8.8637 47 1 7.2481 -4.1965 6.8227 48 1 6.0331 -3.5354 7.9448 49 1 8.3342 -3.2856 3.3980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024448256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:20 Heat of formation + Delta-G solvation = 103.011218 kcal Electronic energy + Delta-G solvation = -30532.418903 eV Core-core repulsion = 26533.132005 eV Total energy + Delta-G solvation = -3999.286898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -45.58020 -40.94529 -39.48238 -38.61812 -36.01207 -34.86432 -34.65329 -33.69493 -32.56331 -32.19629 -28.72384 -28.55129 -28.07173 -26.91266 -25.64018 -25.32582 -24.27687 -22.36636 -22.09035 -21.57132 -20.84600 -19.31587 -18.56450 -18.24798 -17.71389 -17.29037 -17.15270 -16.67158 -15.76992 -15.46958 -15.31716 -15.27125 -15.14512 -15.05581 -14.91869 -14.74329 -14.24258 -14.04947 -13.82844 -13.61942 -13.47635 -13.29517 -13.25447 -13.23010 -12.90764 -12.87499 -12.65305 -12.64370 -12.34781 -12.14125 -12.13232 -12.09476 -11.98867 -11.70727 -11.56132 -11.46057 -11.40856 -11.14041 -10.95907 -10.36863 -10.06833 -8.94765 -8.12705 -5.20236 -0.15298 0.28304 0.68076 1.40065 1.51745 1.54894 1.75105 1.99255 2.53779 2.85244 2.93657 3.04676 3.42246 3.47127 3.56429 3.63531 3.89723 4.03004 4.16415 4.23860 4.29789 4.37971 4.40519 4.47521 4.50651 4.55776 4.57128 4.59159 4.67574 4.69809 4.70590 4.76379 4.96360 4.99537 5.03373 5.09201 5.13914 5.18301 5.19354 5.21863 5.26052 5.34730 5.39456 5.43124 5.70583 5.91914 6.22012 6.32397 6.89767 6.98664 7.06765 7.76509 8.14356 9.03177 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.003556 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.825507 B = 7871.460123 C = 8979.822706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 C -0.150 4.150 4 C -0.159 4.159 5 N -0.109 5.109 6 N -0.064 5.064 7 N -0.274 5.274 8 C 0.116 3.884 9 C 0.610 3.390 10 O -0.554 6.554 11 N -0.669 5.669 12 C 0.133 3.867 13 C 0.160 3.840 14 H 0.059 0.941 15 C -0.122 4.122 16 C -0.103 4.103 17 C -0.134 4.134 18 C 0.139 3.861 19 N -0.610 5.610 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.931 5.931 24 Si 0.868 3.132 25 H -0.307 1.307 26 H -0.215 1.215 27 H -0.314 1.314 28 N -0.256 5.256 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.135 0.865 37 H 0.053 0.947 38 H 0.416 0.584 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.038 0.962 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.959 7.418 -1.805 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.078 3.922 3 C -0.207 4.207 4 C -0.217 4.217 5 N -0.026 5.026 6 N -0.057 5.057 7 N -0.147 5.147 8 C -0.168 4.168 9 C 0.390 3.610 10 O -0.430 6.430 11 N -0.319 5.319 12 C 0.011 3.989 13 C 0.054 3.946 14 H 0.076 0.924 15 C -0.161 4.161 16 C -0.140 4.140 17 C -0.173 4.173 18 C 0.014 3.986 19 N -0.336 5.336 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.576 5.576 24 Si 0.697 3.303 25 H -0.236 1.236 26 H -0.139 1.139 27 H -0.242 1.242 28 N -0.110 5.110 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.072 0.928 38 H 0.254 0.746 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.137 7.348 -2.297 16.982 hybrid contribution 1.367 0.678 0.101 1.530 sum -13.769 8.026 -2.196 16.089 Atomic orbital electron populations 1.22289 0.88625 1.04352 1.05863 1.22282 0.97911 0.93956 0.78087 1.22179 1.02474 0.90005 1.06088 1.22325 1.01714 1.01717 0.95925 1.51379 1.28057 1.04718 1.18491 1.78785 1.09030 1.21990 0.95852 1.76181 1.19383 0.98627 1.20537 1.25276 1.00180 0.97255 0.94061 1.16204 0.80222 0.83279 0.81302 1.90750 1.45781 1.38421 1.68074 1.45816 1.48556 1.16556 1.20999 1.21573 1.00430 0.84075 0.92850 1.21103 0.83405 0.96999 0.93044 0.92384 1.21964 1.00788 0.96141 0.97221 1.21364 0.93601 1.02243 0.96812 1.21989 0.98369 0.97579 0.99332 1.21469 0.91679 0.95910 0.89554 1.44592 1.04274 1.80465 1.04232 1.18864 1.05049 1.29554 0.83857 0.91260 1.25416 0.96628 1.02052 0.97029 1.70278 1.13191 1.39970 1.34133 0.87296 0.75251 0.83778 0.83999 1.23605 1.13873 1.24202 1.74889 1.21509 0.99986 1.14615 0.91749 0.84890 0.91714 0.91961 0.84963 0.90998 0.91806 0.84689 0.92823 0.74589 0.93086 0.88696 0.92979 0.89020 0.90410 0.91285 0.93682 0.90753 0.94461 0.94422 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.66 71.98 0.62 -1.36 16 2 C 0.16 2.83 1.30 3.60 0.00 2.84 16 3 C -0.15 -1.99 7.90 71.98 0.57 -1.43 16 4 C -0.16 -2.51 8.66 71.98 0.62 -1.89 16 5 N -0.11 -3.33 3.72 -152.27 -0.57 -3.90 16 6 N -0.06 -2.28 12.21 37.02 0.45 -1.83 16 7 N -0.27 -11.35 12.26 -52.36 -0.64 -11.99 16 8 C 0.12 4.80 8.14 137.15 1.12 5.92 16 9 C 0.61 26.26 7.84 86.83 0.68 26.94 16 10 O -0.55 -25.62 17.10 -3.80 -0.06 -25.68 16 11 N -0.67 -27.18 3.63 -465.82 -1.69 -28.87 16 12 C 0.13 4.84 4.42 86.38 0.38 5.22 16 13 C 0.16 5.46 3.02 45.12 0.14 5.60 16 14 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 15 C -0.12 -3.36 5.40 30.82 0.17 -3.20 16 16 C -0.10 -2.61 5.88 30.62 0.18 -2.43 16 17 C -0.13 -4.26 6.08 30.67 0.19 -4.08 16 18 C 0.14 5.57 4.25 86.36 0.37 5.93 16 19 N -0.61 -26.45 2.83 -674.43 -1.91 -28.36 16 20 C -0.24 -13.02 7.73 84.03 0.65 -12.37 16 21 H 0.07 4.04 5.44 -2.91 -0.02 4.03 16 22 C -0.01 -0.83 4.86 84.86 0.41 -0.42 16 23 N -0.93 -58.81 13.97 21.65 0.30 -58.51 16 24 Si 0.87 43.88 26.41 68.60 1.81 45.69 16 25 H -0.31 -16.27 7.11 99.48 0.71 -15.57 16 26 H -0.22 -9.53 4.48 99.48 0.45 -9.08 16 27 H -0.31 -16.52 7.11 99.48 0.71 -15.81 16 28 N -0.26 -9.38 11.85 -52.31 -0.62 -10.00 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.42 17.65 7.19 -92.71 -0.67 16.98 16 39 H 0.05 2.14 7.50 -2.39 -0.02 2.12 16 40 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.04 1.71 4.99 -2.39 -0.01 1.70 16 48 H 0.04 1.45 6.83 -2.39 -0.02 1.43 16 49 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -77.53 385.48 3.20 -74.33 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.03 Total: 23.85 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.10 Total: 25.28 kcal Atomic # 7 Polarization: -138.78 SS G_CDS: -4.67 Total: -143.46 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.81 Total: 45.69 kcal Total: -77.53 3.20 -74.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024448256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.339 kcal (2) G-P(sol) polarization free energy of solvation -77.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds