Wall clock time and date at job start Tue Mar 31 2020 20:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 C 1.52997 * 109.47182 * 239.99910 * 2 1 3 5 5 N 1.46503 * 109.47026 * 119.99822 * 2 1 3 6 6 N 1.28717 * 125.32227 * 239.97966 * 5 2 1 7 7 N 1.28983 * 108.98739 * 180.02562 * 6 5 2 8 8 C 1.34189 * 107.25398 * 359.97438 * 7 6 5 9 9 C 1.48001 * 126.69957 * 180.02562 * 8 7 6 10 10 O 1.21532 * 120.00201 * 179.97438 * 9 8 7 11 11 N 1.34781 * 119.99774 * 359.97438 * 9 8 7 12 12 C 1.46502 * 119.99688 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46964 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.58372 * 299.94820 * 13 12 11 15 15 C 1.53190 * 109.58594 * 179.51971 * 13 12 11 16 16 C 1.53045 * 109.31408 * 185.58084 * 15 13 12 17 17 C 1.53036 * 109.53759 * 61.36307 * 16 15 13 18 18 C 1.53192 * 109.31385 * 298.63871 * 17 16 15 19 19 N 1.46921 * 109.58476 * 60.23277 * 13 12 11 20 20 C 1.36940 * 120.63287 * 353.41773 * 19 13 12 21 21 H 1.08005 * 119.99963 * 31.14046 * 20 19 13 22 22 C 1.38813 * 120.00023 * 211.14420 * 20 19 13 23 23 N 1.31621 * 119.99908 * 13.86647 * 22 20 19 24 24 Si 1.86804 * 120.00025 * 193.85961 * 22 20 19 25 25 H 1.48501 * 109.46809 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46762 * 119.99959 * 24 22 20 27 27 H 1.48501 * 109.47101 * 240.00204 * 24 22 20 28 28 N 1.28874 * 125.31518 * 59.99591 * 5 2 1 29 29 H 1.08999 * 109.46997 * 300.00194 * 1 2 3 30 30 H 1.09000 * 109.46772 * 59.99731 * 1 2 3 31 31 H 1.08991 * 109.47047 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47273 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47512 * 299.99816 * 3 2 1 34 34 H 1.08999 * 109.47338 * 60.00015 * 3 2 1 35 35 H 1.09003 * 109.47080 * 300.00288 * 4 2 1 36 36 H 1.08997 * 109.47324 * 60.00097 * 4 2 1 37 37 H 1.08996 * 109.47288 * 180.02562 * 4 2 1 38 38 H 0.96995 * 120.00046 * 0.02562 * 11 9 8 39 39 H 1.08995 * 109.47435 * 300.00272 * 12 11 9 40 40 H 1.09000 * 109.47197 * 60.00429 * 12 11 9 41 41 H 1.09004 * 109.49979 * 305.53015 * 15 13 12 42 42 H 1.09003 * 109.49800 * 65.62970 * 15 13 12 43 43 H 1.08998 * 109.45318 * 301.34575 * 16 15 13 44 44 H 1.08994 * 109.44948 * 181.38191 * 16 15 13 45 45 H 1.08995 * 109.49769 * 178.68613 * 17 16 15 46 46 H 1.09006 * 109.49570 * 58.59016 * 17 16 15 47 47 H 1.09001 * 109.58850 * 294.84807 * 18 17 16 48 48 H 1.09003 * 109.70106 * 174.49153 * 18 17 16 49 49 H 0.97000 * 119.99574 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 7 2.7618 -0.1663 2.1068 7 7 3.0037 -1.0522 3.0126 8 6 2.3779 -2.1803 2.6432 9 6 2.3698 -3.4672 3.3740 10 8 1.7581 -4.4169 2.9256 11 7 3.0409 -3.5861 4.5368 12 6 3.0325 -4.8599 5.2605 13 6 3.8642 -4.7263 6.5377 14 1 4.8901 -4.4637 6.2798 15 6 3.8473 -6.0534 7.3026 16 6 4.5624 -5.8738 8.6438 17 6 3.8259 -4.8249 9.4800 18 6 3.8425 -3.4838 8.7397 19 7 3.2881 -3.6800 7.3933 20 6 2.2539 -2.9027 6.9446 21 1 1.5357 -3.3091 6.2477 22 6 2.1285 -1.5923 7.3853 23 7 3.1309 -1.0084 8.0071 24 14 0.5372 -0.6577 7.0957 25 1 -0.4272 -1.5320 6.3810 26 1 -0.0404 -0.2476 8.4009 27 1 0.8141 0.5490 6.2757 28 7 1.7709 -1.9181 1.5010 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2490 38 1 3.5288 -2.8281 4.8948 39 1 2.0072 -5.1236 5.5199 40 1 3.4594 -5.6392 4.6292 41 1 2.8158 -6.3590 7.4785 42 1 4.3588 -6.8174 6.7171 43 1 5.5864 -5.5444 8.4679 44 1 4.5732 -6.8230 9.1793 45 1 4.3221 -4.7143 10.4442 46 1 2.7946 -5.1420 9.6353 47 1 4.8676 -3.1211 8.6635 48 1 3.2372 -2.7573 9.2819 49 1 3.0431 -0.0929 8.3154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024448257.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:26 Heat of formation + Delta-G solvation = 109.901447 kcal Electronic energy + Delta-G solvation = -30614.918733 eV Core-core repulsion = 26615.930618 eV Total energy + Delta-G solvation = -3998.988115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.19377 -39.23029 -37.83998 -37.53624 -34.30715 -33.28285 -33.01532 -32.34234 -30.69173 -29.86840 -27.95523 -27.90680 -26.48906 -25.24087 -24.35136 -23.81520 -22.11373 -20.81430 -20.73009 -20.12775 -19.10236 -17.77658 -17.21335 -16.82478 -16.11930 -15.59383 -15.47784 -14.63569 -14.55849 -14.20706 -14.00143 -13.88949 -13.68733 -13.51623 -13.36120 -13.17937 -12.85984 -12.80389 -12.70185 -12.41347 -12.19842 -12.06909 -12.02300 -11.85856 -11.73417 -11.41688 -11.20155 -10.92600 -10.82514 -10.79182 -10.73394 -10.51950 -10.26134 -10.14366 -10.10594 -9.96025 -9.87210 -9.47916 -9.32337 -8.58267 -8.27988 -6.60958 -5.79675 -3.25418 1.24372 1.78373 1.82108 3.28549 3.36408 3.45453 3.47034 3.59851 3.95681 4.18768 4.28645 4.44874 4.49410 4.81619 5.06138 5.08935 5.11034 5.24562 5.25607 5.29693 5.31098 5.37550 5.52201 5.55409 5.61977 5.66853 5.70875 5.73081 5.75342 5.95552 5.98430 6.05910 6.14770 6.24410 6.29091 6.38360 6.42128 6.61343 6.73734 6.75937 6.87275 6.95822 7.06935 7.41778 7.69381 7.83842 8.04757 8.45188 8.47642 8.66303 9.21173 9.82393 10.40138 11.27609 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.003662 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.451143 B = 7643.670666 C = 8751.259911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.178 3.822 3 C -0.153 4.153 4 C -0.158 4.158 5 N -0.133 5.133 6 N -0.061 5.061 7 N -0.239 5.239 8 C 0.136 3.864 9 C 0.606 3.394 10 O -0.535 6.535 11 N -0.666 5.666 12 C 0.134 3.866 13 C 0.160 3.840 14 H 0.034 0.966 15 C -0.127 4.127 16 C -0.107 4.107 17 C -0.144 4.144 18 C 0.174 3.826 19 N -0.588 5.588 20 C -0.256 4.256 21 H 0.068 0.932 22 C 0.017 3.983 23 N -0.893 5.893 24 Si 0.886 3.114 25 H -0.279 1.279 26 H -0.288 1.288 27 H -0.289 1.289 28 N -0.254 5.254 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.426 0.574 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.084 0.916 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 0.661 -13.959 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 C -0.211 4.211 4 C -0.217 4.217 5 N -0.048 5.048 6 N -0.054 5.054 7 N -0.114 5.114 8 C -0.149 4.149 9 C 0.385 3.615 10 O -0.411 6.411 11 N -0.317 5.317 12 C 0.011 3.989 13 C 0.053 3.947 14 H 0.052 0.948 15 C -0.166 4.166 16 C -0.145 4.145 17 C -0.183 4.183 18 C 0.048 3.952 19 N -0.312 5.312 20 C -0.385 4.385 21 H 0.086 0.914 22 C -0.183 4.183 23 N -0.537 5.537 24 Si 0.716 3.284 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.215 1.215 28 N -0.107 5.107 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.103 0.897 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.380 0.764 -14.326 14.351 hybrid contribution -0.798 0.604 0.275 1.038 sum -1.177 1.369 -14.051 14.166 Atomic orbital electron populations 1.22258 0.90860 1.04760 1.04044 1.21413 0.96251 0.93065 0.79579 1.22094 1.03238 0.91469 1.04298 1.22236 1.02441 1.02081 0.94925 1.50691 1.30405 1.05561 1.18113 1.78909 1.08587 1.22314 0.95587 1.76305 1.19091 0.97911 1.18061 1.25471 0.99053 0.97457 0.92872 1.16125 0.80964 0.83043 0.81325 1.90774 1.44319 1.37709 1.68272 1.45823 1.49819 1.16557 1.19532 1.21443 1.01568 0.83848 0.92045 1.20742 0.95006 0.89960 0.89028 0.94810 1.21936 1.00594 0.97512 0.96597 1.21357 0.99025 0.98127 0.95973 1.22195 0.99382 0.98991 0.97767 1.20758 0.97262 0.92213 0.84954 1.44063 1.38829 1.37705 1.10640 1.19161 1.02063 0.91408 1.25876 0.91398 1.24996 0.96702 0.96073 1.00493 1.69994 1.28965 1.12457 1.42237 0.86457 0.84090 0.80209 0.77599 1.20416 1.21457 1.21545 1.74930 1.21217 0.98892 1.15689 0.91253 0.89185 0.90234 0.90484 0.89318 0.90451 0.90272 0.89207 0.91337 0.73404 0.90961 0.91988 0.91998 0.92960 0.92843 0.93724 0.93566 0.92833 0.96320 0.89731 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.66 37.16 0.32 -1.06 16 2 C 0.18 1.76 1.30 -131.82 -0.17 1.59 16 3 C -0.15 -1.20 7.90 37.16 0.29 -0.91 16 4 C -0.16 -1.23 8.66 37.16 0.32 -0.91 16 5 N -0.13 -2.04 3.72 0.53 0.00 -2.03 16 6 N -0.06 -1.08 12.21 60.35 0.74 -0.34 16 7 N -0.24 -4.88 12.26 32.10 0.39 -4.49 16 8 C 0.14 2.73 8.14 -156.24 -1.27 1.46 16 9 C 0.61 12.77 7.84 -12.26 -0.10 12.68 16 10 O -0.54 -12.08 17.10 5.34 0.09 -11.99 16 11 N -0.67 -13.70 3.84 -61.20 -0.24 -13.93 16 12 C 0.13 2.56 4.43 -4.04 -0.02 2.55 16 13 C 0.16 3.10 3.01 -67.60 -0.20 2.90 16 14 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 15 C -0.13 -2.11 5.37 -26.61 -0.14 -2.25 16 16 C -0.11 -1.75 5.88 -26.69 -0.16 -1.91 16 17 C -0.14 -2.67 6.08 -26.61 -0.16 -2.84 16 18 C 0.17 3.94 5.27 -3.71 -0.02 3.92 16 19 N -0.59 -13.62 2.97 -164.78 -0.49 -14.11 16 20 C -0.26 -6.54 6.97 -15.06 -0.10 -6.65 16 21 H 0.07 1.80 5.86 -52.48 -0.31 1.49 16 22 C 0.02 0.47 4.97 -17.43 -0.09 0.38 16 23 N -0.89 -24.89 11.23 55.49 0.62 -24.27 16 24 Si 0.89 22.14 29.58 -169.99 -5.03 17.11 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 N -0.25 -4.57 11.85 32.11 0.38 -4.19 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.43 9.41 7.14 -40.82 -0.29 9.11 16 39 H 0.07 1.48 7.42 -51.93 -0.39 1.09 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.08 2.17 6.19 -51.93 -0.32 1.85 16 49 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -31.39 392.02 -7.16 -38.56 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.05 Total: 4.79 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.50 Total: 8.97 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 1.41 Total: -63.35 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.39 -7.16 -38.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024448257.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.459 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds