Wall clock time and date at job start Tue Mar 31 2020 20:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 C 1.52997 * 109.47182 * 239.99910 * 2 1 3 5 5 N 1.46503 * 109.47026 * 119.99822 * 2 1 3 6 6 N 1.28717 * 125.32227 * 239.97966 * 5 2 1 7 7 N 1.28983 * 108.98739 * 180.02562 * 6 5 2 8 8 C 1.34189 * 107.25398 * 359.97438 * 7 6 5 9 9 C 1.48001 * 126.69957 * 180.02562 * 8 7 6 10 10 O 1.21532 * 120.00201 * 179.97438 * 9 8 7 11 11 N 1.34781 * 119.99774 * 359.97438 * 9 8 7 12 12 C 1.46502 * 119.99688 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46964 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.58372 * 299.94820 * 13 12 11 15 15 C 1.53190 * 109.58594 * 179.51971 * 13 12 11 16 16 C 1.53045 * 109.31408 * 185.58084 * 15 13 12 17 17 C 1.53036 * 109.53759 * 61.36307 * 16 15 13 18 18 C 1.53192 * 109.31385 * 298.63871 * 17 16 15 19 19 N 1.46921 * 109.58476 * 60.23277 * 13 12 11 20 20 C 1.36940 * 120.63287 * 353.41773 * 19 13 12 21 21 H 1.08005 * 119.99963 * 31.14046 * 20 19 13 22 22 C 1.38813 * 120.00023 * 211.14420 * 20 19 13 23 23 N 1.31621 * 119.99908 * 13.86647 * 22 20 19 24 24 Si 1.86804 * 120.00025 * 193.85961 * 22 20 19 25 25 H 1.48501 * 109.46809 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46762 * 119.99959 * 24 22 20 27 27 H 1.48501 * 109.47101 * 240.00204 * 24 22 20 28 28 N 1.28874 * 125.31518 * 59.99591 * 5 2 1 29 29 H 1.08999 * 109.46997 * 300.00194 * 1 2 3 30 30 H 1.09000 * 109.46772 * 59.99731 * 1 2 3 31 31 H 1.08991 * 109.47047 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47273 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47512 * 299.99816 * 3 2 1 34 34 H 1.08999 * 109.47338 * 60.00015 * 3 2 1 35 35 H 1.09003 * 109.47080 * 300.00288 * 4 2 1 36 36 H 1.08997 * 109.47324 * 60.00097 * 4 2 1 37 37 H 1.08996 * 109.47288 * 180.02562 * 4 2 1 38 38 H 0.96995 * 120.00046 * 0.02562 * 11 9 8 39 39 H 1.08995 * 109.47435 * 300.00272 * 12 11 9 40 40 H 1.09000 * 109.47197 * 60.00429 * 12 11 9 41 41 H 1.09004 * 109.49979 * 305.53015 * 15 13 12 42 42 H 1.09003 * 109.49800 * 65.62970 * 15 13 12 43 43 H 1.08998 * 109.45318 * 301.34575 * 16 15 13 44 44 H 1.08994 * 109.44948 * 181.38191 * 16 15 13 45 45 H 1.08995 * 109.49769 * 178.68613 * 17 16 15 46 46 H 1.09006 * 109.49570 * 58.59016 * 17 16 15 47 47 H 1.09001 * 109.58850 * 294.84807 * 18 17 16 48 48 H 1.09003 * 109.70106 * 174.49153 * 18 17 16 49 49 H 0.97000 * 119.99574 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 7 2.7618 -0.1663 2.1068 7 7 3.0037 -1.0522 3.0126 8 6 2.3779 -2.1803 2.6432 9 6 2.3698 -3.4672 3.3740 10 8 1.7581 -4.4169 2.9256 11 7 3.0409 -3.5861 4.5368 12 6 3.0325 -4.8599 5.2605 13 6 3.8642 -4.7263 6.5377 14 1 4.8901 -4.4637 6.2798 15 6 3.8473 -6.0534 7.3026 16 6 4.5624 -5.8738 8.6438 17 6 3.8259 -4.8249 9.4800 18 6 3.8425 -3.4838 8.7397 19 7 3.2881 -3.6800 7.3933 20 6 2.2539 -2.9027 6.9446 21 1 1.5357 -3.3091 6.2477 22 6 2.1285 -1.5923 7.3853 23 7 3.1309 -1.0084 8.0071 24 14 0.5372 -0.6577 7.0957 25 1 -0.4272 -1.5320 6.3810 26 1 -0.0404 -0.2476 8.4009 27 1 0.8141 0.5490 6.2757 28 7 1.7709 -1.9181 1.5010 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2490 38 1 3.5288 -2.8281 4.8948 39 1 2.0072 -5.1236 5.5199 40 1 3.4594 -5.6392 4.6292 41 1 2.8158 -6.3590 7.4785 42 1 4.3588 -6.8174 6.7171 43 1 5.5864 -5.5444 8.4679 44 1 4.5732 -6.8230 9.1793 45 1 4.3221 -4.7143 10.4442 46 1 2.7946 -5.1420 9.6353 47 1 4.8676 -3.1211 8.6635 48 1 3.2372 -2.7573 9.2819 49 1 3.0431 -0.0929 8.3154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024448257.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:25 Heat of formation + Delta-G solvation = 89.321611 kcal Electronic energy + Delta-G solvation = -30615.811142 eV Core-core repulsion = 26615.930618 eV Total energy + Delta-G solvation = -3999.880524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.57768 -40.87160 -39.32591 -38.61482 -35.90894 -34.89806 -34.64533 -33.67949 -32.29628 -31.65528 -28.71625 -28.55652 -28.00709 -26.99599 -25.63915 -25.36270 -23.78858 -22.37155 -22.07492 -21.52184 -20.68962 -19.28423 -18.55442 -18.16471 -17.66211 -17.33609 -17.12441 -16.21070 -15.78816 -15.53716 -15.36595 -15.26210 -15.10705 -15.02393 -14.81190 -14.54677 -14.06287 -14.03939 -13.64528 -13.54219 -13.43790 -13.28352 -13.23614 -12.91102 -12.88178 -12.84738 -12.65267 -12.59457 -12.34431 -12.31017 -12.13226 -12.09431 -12.05920 -11.78248 -11.56634 -11.48620 -11.46000 -11.08110 -10.99537 -10.53592 -10.02093 -8.54351 -7.84629 -5.29346 -0.15358 0.29534 0.68496 1.31937 1.37772 1.42406 1.79083 1.98820 2.45751 2.88788 3.00490 3.32475 3.46682 3.55358 3.59884 3.64852 3.97774 4.04575 4.26181 4.28425 4.31088 4.40169 4.45081 4.50203 4.56085 4.57252 4.59199 4.65958 4.69219 4.70126 4.74040 4.89584 4.98814 5.03271 5.08688 5.17033 5.18285 5.18984 5.26597 5.29817 5.32900 5.48877 5.51122 5.65786 5.75674 5.87933 6.37006 6.45048 6.92277 7.08239 7.20492 7.89610 8.41881 9.20195 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.003662 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.451143 B = 7643.670666 C = 8751.259911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 C -0.150 4.150 4 C -0.153 4.153 5 N -0.111 5.111 6 N -0.065 5.065 7 N -0.271 5.271 8 C 0.114 3.886 9 C 0.607 3.393 10 O -0.555 6.555 11 N -0.667 5.667 12 C 0.136 3.864 13 C 0.158 3.842 14 H 0.035 0.965 15 C -0.120 4.120 16 C -0.103 4.103 17 C -0.135 4.135 18 C 0.178 3.822 19 N -0.602 5.602 20 C -0.234 4.234 21 H 0.060 0.940 22 C -0.024 4.024 23 N -0.918 5.918 24 Si 0.925 3.075 25 H -0.283 1.283 26 H -0.286 1.286 27 H -0.300 1.300 28 N -0.255 5.255 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.418 0.582 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.000 1.000 48 H 0.049 0.951 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 -0.246 -15.760 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 C -0.208 4.208 4 C -0.211 4.211 5 N -0.028 5.028 6 N -0.058 5.058 7 N -0.145 5.145 8 C -0.169 4.169 9 C 0.388 3.612 10 O -0.432 6.432 11 N -0.317 5.317 12 C 0.013 3.987 13 C 0.052 3.948 14 H 0.052 0.948 15 C -0.159 4.159 16 C -0.140 4.140 17 C -0.174 4.174 18 C 0.052 3.948 19 N -0.326 5.326 20 C -0.365 4.365 21 H 0.077 0.923 22 C -0.221 4.221 23 N -0.564 5.564 24 Si 0.756 3.244 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.228 1.228 28 N -0.110 5.110 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.257 0.743 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.019 0.981 48 H 0.067 0.933 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.378 -0.164 -16.121 16.126 hybrid contribution -0.827 0.922 0.675 1.411 sum -1.205 0.758 -15.446 15.511 Atomic orbital electron populations 1.22324 0.89531 1.04270 1.05510 1.22285 0.97389 0.94152 0.78444 1.22178 1.02895 0.90009 1.05698 1.22288 1.02126 1.01569 0.95161 1.51405 1.28305 1.04709 1.18343 1.78815 1.09225 1.21880 0.95850 1.76259 1.20330 0.98388 1.19499 1.25319 1.00438 0.97346 0.93840 1.16219 0.80475 0.83257 0.81296 1.90745 1.45146 1.38473 1.68816 1.45880 1.49493 1.16777 1.19525 1.21546 1.00906 0.83919 0.92352 1.20943 0.94549 0.90356 0.88961 0.94755 1.21885 1.01001 0.96191 0.96867 1.21348 0.98564 0.98620 0.95498 1.22042 0.99774 0.97060 0.98490 1.20587 0.95224 0.93938 0.85029 1.44262 1.38618 1.38170 1.11599 1.19156 1.02065 0.91167 1.24064 0.92273 1.25366 0.98116 0.96960 1.01698 1.70085 1.29957 1.12272 1.44085 0.85849 0.82453 0.78987 0.77102 1.20823 1.21268 1.22753 1.74885 1.20968 1.00160 1.14951 0.92768 0.84706 0.91683 0.91099 0.84947 0.91961 0.91662 0.84884 0.91869 0.74337 0.92389 0.89268 0.92434 0.89548 0.92464 0.90572 0.91800 0.93468 0.98146 0.93286 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 8.66 71.98 0.62 -1.76 16 2 C 0.16 2.80 1.30 3.60 0.00 2.80 16 3 C -0.15 -2.01 7.90 71.98 0.57 -1.44 16 4 C -0.15 -1.98 8.66 71.98 0.62 -1.36 16 5 N -0.11 -3.35 3.72 -152.25 -0.57 -3.92 16 6 N -0.07 -2.34 12.21 37.02 0.45 -1.89 16 7 N -0.27 -11.40 12.26 -52.37 -0.64 -12.04 16 8 C 0.11 4.72 8.14 137.15 1.12 5.84 16 9 C 0.61 26.07 7.84 86.83 0.68 26.75 16 10 O -0.55 -25.24 17.10 -3.82 -0.07 -25.30 16 11 N -0.67 -27.86 3.84 -465.82 -1.79 -29.65 16 12 C 0.14 5.08 4.43 86.38 0.38 5.46 16 13 C 0.16 5.95 3.01 44.98 0.14 6.09 16 14 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 15 C -0.12 -3.64 5.37 30.67 0.16 -3.47 16 16 C -0.10 -3.02 5.88 30.62 0.18 -2.84 16 17 C -0.13 -4.79 6.08 30.67 0.19 -4.60 16 18 C 0.18 8.16 5.27 86.36 0.46 8.62 16 19 N -0.60 -28.04 2.97 -675.23 -2.01 -30.04 16 20 C -0.23 -12.21 6.97 84.03 0.59 -11.63 16 21 H 0.06 3.19 5.86 -2.91 -0.02 3.18 16 22 C -0.02 -1.34 4.97 84.86 0.42 -0.92 16 23 N -0.92 -52.98 11.23 21.65 0.24 -52.74 16 24 Si 0.93 46.84 29.58 68.60 2.03 48.87 16 25 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 28 N -0.26 -9.26 11.85 -52.32 -0.62 -9.88 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.42 19.01 7.14 -92.71 -0.66 18.35 16 39 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 40 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.05 2.59 6.19 -2.39 -0.01 2.58 16 49 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -71.46 392.02 3.45 -68.01 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.29 Total: 21.04 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 6.13 Total: 27.54 kcal Atomic # 7 Polarization: -135.22 SS G_CDS: -4.93 Total: -140.15 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.07 Total: -25.30 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -71.46 3.45 -68.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024448257.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.327 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds