Wall clock time and date at job start Tue Mar 31 2020 19:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00003 * 2 1 4 4 C 1.52998 * 109.47075 * 184.98168 * 3 2 1 5 5 N 1.46500 * 109.47099 * 185.15012 * 4 3 2 6 6 N 1.28452 * 125.19317 * 260.66684 * 5 4 3 7 7 C 1.30862 * 110.92438 * 180.27787 * 6 5 4 8 8 C 1.39666 * 107.86809 * 359.71487 * 7 6 5 9 9 C 1.36597 * 125.19122 * 80.45056 * 5 4 3 10 10 C 1.47170 * 126.88492 * 0.02562 * 9 5 4 11 11 O 1.21627 * 120.00244 * 172.52602 * 10 9 5 12 12 N 1.34773 * 119.99776 * 352.52330 * 10 9 5 13 13 C 1.46496 * 120.00172 * 184.60383 * 12 10 9 14 14 C 1.52997 * 109.47510 * 175.10608 * 13 12 10 15 15 H 1.09001 * 109.70368 * 303.65399 * 14 13 12 16 16 C 1.53630 * 109.66112 * 64.24303 * 14 13 12 17 17 C 1.53044 * 109.23746 * 174.55163 * 16 14 13 18 18 C 1.53038 * 109.53883 * 298.50827 * 17 16 14 19 19 C 1.53189 * 109.31103 * 61.36772 * 18 17 16 20 20 N 1.46923 * 108.77772 * 305.36223 * 19 18 17 21 21 C 1.36933 * 120.63621 * 233.58664 * 20 19 18 22 22 H 1.07996 * 120.00046 * 143.69088 * 21 20 19 23 23 C 1.38811 * 119.99638 * 323.97065 * 21 20 19 24 24 N 1.31622 * 120.00301 * 2.30697 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 182.30083 * 23 21 20 26 26 H 1.48501 * 109.47252 * 94.99369 * 25 23 21 27 27 H 1.48494 * 109.47610 * 215.00163 * 25 23 21 28 28 H 1.48504 * 109.46864 * 335.00091 * 25 23 21 29 29 H 1.09001 * 109.46790 * 64.97871 * 1 2 3 30 30 H 1.09005 * 109.47089 * 184.97556 * 1 2 3 31 31 H 1.08996 * 109.47318 * 304.97671 * 1 2 3 32 32 H 1.09002 * 109.47311 * 64.98442 * 3 2 1 33 33 H 1.08997 * 109.47032 * 304.98210 * 3 2 1 34 34 H 1.09002 * 109.47238 * 65.15151 * 4 3 2 35 35 H 1.09007 * 109.47150 * 305.14584 * 4 3 2 36 36 H 1.07996 * 126.06109 * 179.75159 * 7 6 5 37 37 H 1.08000 * 127.32450 * 180.02562 * 8 7 6 38 38 H 0.97005 * 119.99953 * 4.60574 * 12 10 9 39 39 H 1.08999 * 109.47071 * 55.10311 * 13 12 10 40 40 H 1.09006 * 109.47172 * 295.10461 * 13 12 10 41 41 H 1.08995 * 109.63549 * 54.55893 * 16 14 13 42 42 H 1.09001 * 109.45722 * 294.42873 * 16 14 13 43 43 H 1.09001 * 109.45869 * 178.48670 * 17 16 14 44 44 H 1.08999 * 109.45054 * 58.52719 * 17 16 14 45 45 H 1.09001 * 109.49772 * 301.41302 * 18 17 16 46 46 H 1.09007 * 109.52578 * 181.33516 * 18 17 16 47 47 H 1.08998 * 109.58720 * 185.57783 * 19 18 17 48 48 H 1.08997 * 109.70502 * 65.22095 * 19 18 17 49 49 H 0.97000 * 120.00155 * 175.00191 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1868 -0.1253 5 7 4.1357 2.5152 -0.0019 6 7 4.5217 3.2470 -0.9845 7 6 5.0265 4.3759 -0.5564 8 6 4.9541 4.3761 0.8384 9 6 4.3719 3.1665 1.1754 10 6 4.0735 2.6770 2.5309 11 8 4.4592 3.3007 3.5012 12 7 3.3729 1.5378 2.6969 13 6 2.9888 1.1035 4.0422 14 6 2.1048 -0.1413 3.9435 15 1 1.2401 0.0710 3.3147 16 6 2.9116 -1.3018 3.3414 17 6 2.0633 -2.5753 3.3724 18 6 1.7218 -2.9276 4.8220 19 6 0.9065 -1.7883 5.4416 20 7 1.6537 -0.5329 5.2858 21 6 1.9196 0.2600 6.3701 22 1 2.8582 0.7903 6.4340 23 6 0.9850 0.3777 7.3897 24 7 -0.1372 -0.3081 7.3363 25 14 1.3200 1.5093 8.8377 26 1 0.6906 2.8311 8.5890 27 1 0.7501 0.9143 10.0732 28 1 2.7857 1.6821 9.0021 29 1 -0.3633 0.4347 -0.9312 30 1 -0.3633 -1.0238 0.0891 31 1 -0.3634 0.5891 0.8420 32 1 1.7610 1.8141 0.9313 33 1 1.6198 1.8770 -0.8420 34 1 3.7829 0.7613 -1.0965 35 1 3.9108 0.5395 0.6651 36 1 5.4272 5.1673 -1.1724 37 1 5.2822 5.1548 1.5111 38 1 3.1229 1.0053 1.9255 39 1 2.4375 1.9022 4.5383 40 1 3.8843 0.8684 4.6176 41 1 3.8208 -1.4561 3.9224 42 1 3.1745 -1.0649 2.3104 43 1 2.6224 -3.3951 2.9214 44 1 1.1428 -2.4119 2.8118 45 1 2.6422 -3.0666 5.3891 46 1 1.1376 -3.8476 4.8454 47 1 0.7453 -1.9885 6.5009 48 1 -0.0550 -1.7066 4.9348 49 1 -0.7572 -0.2823 8.0818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024502723.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:25 Heat of formation + Delta-G solvation = 29.818319 kcal Electronic energy + Delta-G solvation = -31137.382874 eV Core-core repulsion = 27102.629343 eV Total energy + Delta-G solvation = -4034.753531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.78311 -39.42886 -38.33086 -37.70552 -35.15239 -33.80150 -33.12361 -31.43495 -30.52166 -29.77452 -29.60467 -26.57274 -26.16105 -25.04732 -23.97926 -22.74743 -22.03901 -21.70829 -20.69307 -20.21580 -19.15535 -18.22390 -17.01441 -16.59183 -16.35059 -16.13342 -15.83495 -15.56654 -15.10847 -14.86390 -14.63470 -14.56802 -13.98982 -13.86095 -13.58106 -13.42374 -13.31755 -13.16390 -12.83877 -12.56537 -12.41122 -12.26878 -11.98563 -11.77219 -11.61684 -11.17534 -11.05509 -10.89811 -10.73731 -10.58852 -10.31009 -10.14529 -10.07182 -10.00627 -9.94777 -9.53218 -9.42227 -9.36578 -9.22861 -8.79530 -8.48211 -6.60706 -5.79197 -3.38539 1.13392 1.98320 2.45751 3.16076 3.22314 3.37017 3.44425 3.47245 3.54705 4.03299 4.37749 4.44721 4.51930 4.67687 4.73938 5.02086 5.07167 5.18299 5.19011 5.28007 5.29804 5.32821 5.41509 5.51492 5.55237 5.59255 5.69262 5.72608 5.91620 5.95226 6.12723 6.32245 6.33501 6.35246 6.44082 6.45812 6.56098 6.67728 6.69885 6.75423 6.75913 6.90636 6.98083 7.43105 7.51566 7.75145 7.78978 7.81541 8.21068 8.46784 9.19412 9.77258 10.36736 11.23313 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.004181 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.547194 B = 6695.213493 C = 8293.006546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.034 3.966 4 C 0.109 3.891 5 N -0.278 5.278 6 N -0.276 5.276 7 C -0.001 4.001 8 C -0.158 4.158 9 C -0.034 4.034 10 C 0.581 3.419 11 O -0.517 6.517 12 N -0.730 5.730 13 C 0.124 3.876 14 C 0.168 3.832 15 H 0.029 0.971 16 C -0.130 4.130 17 C -0.106 4.106 18 C -0.145 4.145 19 C 0.172 3.828 20 N -0.584 5.584 21 C -0.261 4.261 22 H 0.068 0.932 23 C 0.014 3.986 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.189 0.811 37 H 0.166 0.834 38 H 0.395 0.605 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.046 0.954 47 H 0.096 0.904 48 H 0.015 0.985 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 1.367 -17.414 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.298 6.298 3 C -0.044 4.044 4 C -0.012 4.012 5 N -0.069 5.069 6 N -0.108 5.108 7 C -0.179 4.179 8 C -0.187 4.187 9 C -0.161 4.161 10 C 0.365 3.635 11 O -0.391 6.391 12 N -0.387 5.387 13 C 0.002 3.998 14 C 0.061 3.939 15 H 0.046 0.954 16 C -0.169 4.169 17 C -0.143 4.143 18 C -0.185 4.185 19 C 0.047 3.953 20 N -0.308 5.308 21 C -0.390 4.390 22 H 0.086 0.914 23 C -0.186 4.186 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.206 0.794 37 H 0.183 0.817 38 H 0.235 0.765 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.114 0.886 48 H 0.033 0.967 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.269 0.916 -17.515 18.051 hybrid contribution -0.101 0.947 1.074 1.436 sum 4.168 1.864 -16.441 17.063 Atomic orbital electron populations 1.22848 0.79308 1.03746 1.00437 1.87816 1.21071 1.25309 1.95584 1.22906 0.92029 0.86919 1.02585 1.21877 0.92769 0.79389 1.07198 1.45590 1.43735 1.14669 1.02887 1.73152 1.15850 1.05018 1.16783 1.23640 1.04056 0.96284 0.93884 1.22225 1.03390 0.97106 0.95937 1.22014 1.09826 0.96597 0.87615 1.16972 0.79037 0.81297 0.86196 1.90857 1.51869 1.57157 1.39250 1.46743 1.56004 1.24100 1.11826 1.21711 0.99489 0.98120 0.80457 1.20616 0.93564 0.90272 0.89485 0.95387 1.22150 0.99263 0.96933 0.98582 1.21345 0.98991 0.96395 0.97606 1.22231 1.00968 0.99666 0.95607 1.20896 0.90618 0.82251 1.01551 1.43897 1.65446 1.21080 1.00377 1.19153 0.98562 1.22989 0.98337 0.91421 1.25308 0.94693 0.98384 1.00179 1.69919 1.10458 1.42793 1.31289 0.86295 0.78007 0.80955 0.81675 1.21232 1.21662 1.20180 0.93860 0.88709 0.93144 0.91620 0.91449 0.85871 0.87266 0.79381 0.81659 0.76513 0.89633 0.91004 0.92228 0.93875 0.93869 0.92880 0.92889 0.93548 0.88605 0.96673 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.11 10.70 -35.23 -0.38 -4.49 16 3 C 0.03 0.35 5.39 37.16 0.20 0.55 16 4 C 0.11 1.09 5.84 -4.04 -0.02 1.07 16 5 N -0.28 -3.37 3.35 -57.13 -0.19 -3.56 16 6 N -0.28 -3.32 11.90 30.59 0.36 -2.95 16 7 C 0.00 -0.01 12.03 -17.43 -0.21 -0.22 16 8 C -0.16 -1.94 10.85 -38.98 -0.42 -2.36 16 9 C -0.03 -0.48 6.94 -82.05 -0.57 -1.04 16 10 C 0.58 9.71 7.78 -12.64 -0.10 9.62 16 11 O -0.52 -10.44 16.93 5.25 0.09 -10.35 16 12 N -0.73 -11.54 4.61 -61.47 -0.28 -11.83 16 13 C 0.12 2.39 3.89 -4.05 -0.02 2.38 16 14 C 0.17 3.29 3.05 -67.37 -0.21 3.08 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 C -0.13 -2.17 5.19 -26.38 -0.14 -2.31 16 17 C -0.11 -1.73 5.88 -26.69 -0.16 -1.89 16 18 C -0.15 -2.72 6.08 -26.61 -0.16 -2.88 16 19 C 0.17 3.95 5.24 -3.71 -0.02 3.93 16 20 N -0.58 -13.84 2.99 -164.52 -0.49 -14.33 16 21 C -0.26 -6.84 8.33 -15.06 -0.13 -6.97 16 22 H 0.07 1.78 6.51 -52.49 -0.34 1.44 16 23 C 0.01 0.37 5.29 -17.43 -0.09 0.28 16 24 N -0.90 -25.15 10.74 55.49 0.60 -24.56 16 25 Si 0.90 21.58 29.56 -169.99 -5.02 16.55 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.78 6.78 -51.93 -0.35 0.43 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.11 1.11 6.21 -51.92 -0.32 0.78 16 36 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.39 5.37 1.92 -40.82 -0.08 5.29 16 39 H 0.09 1.87 7.50 -51.93 -0.39 1.48 16 40 H 0.07 1.47 7.61 -51.93 -0.40 1.08 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.04 0.62 7.20 -51.93 -0.37 0.24 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.10 2.49 6.04 -51.93 -0.31 2.18 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -31.03 386.78 -8.04 -39.06 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.62 Total: 5.96 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -0.92 Total: 4.66 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.01 Total: -57.22 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.29 Total: -14.84 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.03 -8.04 -39.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024502723.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.879 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds