Wall clock time and date at job start Tue Mar 31 2020 19:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00003 * 2 1 4 4 C 1.52998 * 109.47075 * 184.98168 * 3 2 1 5 5 N 1.46500 * 109.47099 * 185.15012 * 4 3 2 6 6 N 1.28452 * 125.19317 * 260.66684 * 5 4 3 7 7 C 1.30862 * 110.92438 * 180.27787 * 6 5 4 8 8 C 1.39666 * 107.86809 * 359.71487 * 7 6 5 9 9 C 1.36597 * 125.19122 * 80.45056 * 5 4 3 10 10 C 1.47170 * 126.88492 * 0.02562 * 9 5 4 11 11 O 1.21627 * 120.00244 * 172.52602 * 10 9 5 12 12 N 1.34773 * 119.99776 * 352.52330 * 10 9 5 13 13 C 1.46496 * 120.00172 * 184.60383 * 12 10 9 14 14 C 1.52997 * 109.47510 * 175.10608 * 13 12 10 15 15 H 1.09001 * 109.70368 * 303.65399 * 14 13 12 16 16 C 1.53630 * 109.66112 * 64.24303 * 14 13 12 17 17 C 1.53044 * 109.23746 * 174.55163 * 16 14 13 18 18 C 1.53038 * 109.53883 * 298.50827 * 17 16 14 19 19 C 1.53189 * 109.31103 * 61.36772 * 18 17 16 20 20 N 1.46923 * 108.77772 * 305.36223 * 19 18 17 21 21 C 1.36933 * 120.63621 * 233.58664 * 20 19 18 22 22 H 1.07996 * 120.00046 * 143.69088 * 21 20 19 23 23 C 1.38811 * 119.99638 * 323.97065 * 21 20 19 24 24 N 1.31622 * 120.00301 * 2.30697 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 182.30083 * 23 21 20 26 26 H 1.48501 * 109.47252 * 94.99369 * 25 23 21 27 27 H 1.48494 * 109.47610 * 215.00163 * 25 23 21 28 28 H 1.48504 * 109.46864 * 335.00091 * 25 23 21 29 29 H 1.09001 * 109.46790 * 64.97871 * 1 2 3 30 30 H 1.09005 * 109.47089 * 184.97556 * 1 2 3 31 31 H 1.08996 * 109.47318 * 304.97671 * 1 2 3 32 32 H 1.09002 * 109.47311 * 64.98442 * 3 2 1 33 33 H 1.08997 * 109.47032 * 304.98210 * 3 2 1 34 34 H 1.09002 * 109.47238 * 65.15151 * 4 3 2 35 35 H 1.09007 * 109.47150 * 305.14584 * 4 3 2 36 36 H 1.07996 * 126.06109 * 179.75159 * 7 6 5 37 37 H 1.08000 * 127.32450 * 180.02562 * 8 7 6 38 38 H 0.97005 * 119.99953 * 4.60574 * 12 10 9 39 39 H 1.08999 * 109.47071 * 55.10311 * 13 12 10 40 40 H 1.09006 * 109.47172 * 295.10461 * 13 12 10 41 41 H 1.08995 * 109.63549 * 54.55893 * 16 14 13 42 42 H 1.09001 * 109.45722 * 294.42873 * 16 14 13 43 43 H 1.09001 * 109.45869 * 178.48670 * 17 16 14 44 44 H 1.08999 * 109.45054 * 58.52719 * 17 16 14 45 45 H 1.09001 * 109.49772 * 301.41302 * 18 17 16 46 46 H 1.09007 * 109.52578 * 181.33516 * 18 17 16 47 47 H 1.08998 * 109.58720 * 185.57783 * 19 18 17 48 48 H 1.08997 * 109.70502 * 65.22095 * 19 18 17 49 49 H 0.97000 * 120.00155 * 175.00191 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1868 -0.1253 5 7 4.1357 2.5152 -0.0019 6 7 4.5217 3.2470 -0.9845 7 6 5.0265 4.3759 -0.5564 8 6 4.9541 4.3761 0.8384 9 6 4.3719 3.1665 1.1754 10 6 4.0735 2.6770 2.5309 11 8 4.4592 3.3007 3.5012 12 7 3.3729 1.5378 2.6969 13 6 2.9888 1.1035 4.0422 14 6 2.1048 -0.1413 3.9435 15 1 1.2401 0.0710 3.3147 16 6 2.9116 -1.3018 3.3414 17 6 2.0633 -2.5753 3.3724 18 6 1.7218 -2.9276 4.8220 19 6 0.9065 -1.7883 5.4416 20 7 1.6537 -0.5329 5.2858 21 6 1.9196 0.2600 6.3701 22 1 2.8582 0.7903 6.4340 23 6 0.9850 0.3777 7.3897 24 7 -0.1372 -0.3081 7.3363 25 14 1.3200 1.5093 8.8377 26 1 0.6906 2.8311 8.5890 27 1 0.7501 0.9143 10.0732 28 1 2.7857 1.6821 9.0021 29 1 -0.3633 0.4347 -0.9312 30 1 -0.3633 -1.0238 0.0891 31 1 -0.3634 0.5891 0.8420 32 1 1.7610 1.8141 0.9313 33 1 1.6198 1.8770 -0.8420 34 1 3.7829 0.7613 -1.0965 35 1 3.9108 0.5395 0.6651 36 1 5.4272 5.1673 -1.1724 37 1 5.2822 5.1548 1.5111 38 1 3.1229 1.0053 1.9255 39 1 2.4375 1.9022 4.5383 40 1 3.8843 0.8684 4.6176 41 1 3.8208 -1.4561 3.9224 42 1 3.1745 -1.0649 2.3104 43 1 2.6224 -3.3951 2.9214 44 1 1.1428 -2.4119 2.8118 45 1 2.6422 -3.0666 5.3891 46 1 1.1376 -3.8476 4.8454 47 1 0.7453 -1.9885 6.5009 48 1 -0.0550 -1.7066 4.9348 49 1 -0.7572 -0.2823 8.0818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024502723.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:24 Heat of formation + Delta-G solvation = 9.618801 kcal Electronic energy + Delta-G solvation = -31138.258791 eV Core-core repulsion = 27102.629343 eV Total energy + Delta-G solvation = -4035.629448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.72806 -40.81486 -39.36111 -39.11985 -36.43016 -34.98577 -34.86407 -32.82805 -31.96395 -31.32535 -30.49888 -27.76216 -27.31283 -26.85617 -24.88328 -24.01913 -23.64950 -22.66754 -22.23028 -21.36855 -20.79141 -19.34346 -18.37897 -17.82792 -17.44627 -17.24408 -17.02788 -16.74415 -16.62713 -16.28855 -15.77293 -15.67973 -15.53518 -15.14024 -14.96078 -14.85628 -14.57519 -14.33706 -14.17547 -14.04963 -13.83608 -13.47953 -13.20998 -12.93858 -12.81144 -12.73635 -12.52661 -12.39408 -12.38012 -12.06507 -11.98820 -11.85500 -11.54546 -11.38616 -11.15924 -11.05385 -10.85782 -10.52566 -10.46214 -10.25644 -10.09202 -8.56384 -7.83152 -5.44601 0.04717 1.10626 1.42353 1.45847 1.53470 1.55150 1.83582 2.02568 2.47693 2.70384 3.20533 3.27647 3.38697 3.61062 3.65902 3.84875 3.90507 3.93661 4.07024 4.17778 4.19232 4.30304 4.35306 4.38778 4.46195 4.49678 4.51377 4.54531 4.59025 4.76480 4.86540 4.89044 4.90458 4.96056 5.09032 5.15939 5.19819 5.27935 5.39459 5.39630 5.45007 5.59374 5.64085 5.71435 5.87757 5.91748 6.21872 6.44805 6.82808 6.95375 7.18063 7.83605 8.37026 9.15888 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.004181 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.547194 B = 6695.213493 C = 8293.006546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.388 6.388 3 C 0.038 3.962 4 C 0.105 3.895 5 N -0.274 5.274 6 N -0.279 5.279 7 C 0.008 3.992 8 C -0.157 4.157 9 C -0.061 4.061 10 C 0.583 3.417 11 O -0.560 6.560 12 N -0.716 5.716 13 C 0.141 3.859 14 C 0.169 3.831 15 H 0.026 0.974 16 C -0.122 4.122 17 C -0.101 4.101 18 C -0.136 4.136 19 C 0.176 3.824 20 N -0.601 5.601 21 C -0.261 4.261 22 H 0.062 0.938 23 C -0.035 4.035 24 N -0.926 5.926 25 Si 0.954 3.046 26 H -0.290 1.290 27 H -0.288 1.288 28 H -0.273 1.273 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.108 0.892 36 H 0.228 0.772 37 H 0.173 0.827 38 H 0.407 0.593 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.067 0.933 47 H 0.060 0.940 48 H -0.003 1.003 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 1.052 -20.398 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.306 6.306 3 C -0.040 4.040 4 C -0.015 4.015 5 N -0.066 5.066 6 N -0.110 5.110 7 C -0.168 4.168 8 C -0.186 4.186 9 C -0.187 4.187 10 C 0.369 3.631 11 O -0.437 6.437 12 N -0.374 5.374 13 C 0.017 3.983 14 C 0.063 3.937 15 H 0.044 0.956 16 C -0.161 4.161 17 C -0.138 4.138 18 C -0.175 4.175 19 C 0.051 3.949 20 N -0.326 5.326 21 C -0.391 4.391 22 H 0.079 0.921 23 C -0.232 4.232 24 N -0.571 5.571 25 Si 0.783 3.217 26 H -0.217 1.217 27 H -0.215 1.215 28 H -0.198 1.198 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.166 0.834 35 H 0.126 0.874 36 H 0.244 0.756 37 H 0.191 0.809 38 H 0.250 0.750 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.015 0.985 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.385 0.574 -20.550 21.251 hybrid contribution -0.439 1.092 1.905 2.239 sum 4.946 1.666 -18.644 19.361 Atomic orbital electron populations 1.22980 0.78654 1.04363 1.00877 1.87790 1.21821 1.25398 1.95616 1.22839 0.92319 0.86856 1.02001 1.22044 0.92377 0.78618 1.08504 1.45702 1.43641 1.15130 1.02095 1.73179 1.15780 1.05500 1.16571 1.24252 1.02776 0.96495 0.93292 1.22532 1.02304 0.96544 0.97194 1.21684 1.12223 0.97933 0.86843 1.17333 0.78038 0.80688 0.87058 1.90827 1.53625 1.58286 1.40998 1.46523 1.55748 1.24320 1.10844 1.21266 0.98198 0.96942 0.81889 1.20719 0.93790 0.91642 0.87571 0.95593 1.22052 0.98340 0.95817 0.99843 1.21331 0.99618 0.96979 0.95889 1.22075 0.99990 0.98512 0.96929 1.20702 0.90793 0.83751 0.99634 1.44105 1.65576 1.21431 1.01456 1.19317 0.98184 1.22429 0.99207 0.92051 1.25896 0.94898 0.99790 1.02577 1.70069 1.11202 1.44131 1.31747 0.85459 0.77792 0.79099 0.79352 1.21672 1.21459 1.19831 0.91947 0.87728 0.94559 0.93748 0.90239 0.83400 0.87444 0.75567 0.80935 0.74954 0.93045 0.92567 0.92969 0.90766 0.90551 0.92237 0.93621 0.91487 0.92141 0.98459 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.39 -7.51 10.70 -148.98 -1.59 -9.10 16 3 C 0.04 0.71 5.39 71.98 0.39 1.10 16 4 C 0.11 1.85 5.84 86.38 0.50 2.36 16 5 N -0.27 -6.06 3.35 -334.67 -1.12 -7.18 16 6 N -0.28 -5.84 11.90 -57.15 -0.68 -6.52 16 7 C 0.01 0.15 12.03 85.18 1.02 1.17 16 8 C -0.16 -3.57 10.85 22.66 0.25 -3.33 16 9 C -0.06 -1.63 6.94 40.79 0.28 -1.35 16 10 C 0.58 19.67 7.78 86.59 0.67 20.35 16 11 O -0.56 -23.32 16.93 -4.12 -0.07 -23.39 16 12 N -0.72 -22.76 4.61 -466.64 -2.15 -24.91 16 13 C 0.14 5.58 3.89 86.38 0.34 5.91 16 14 C 0.17 6.65 3.05 45.12 0.14 6.79 16 15 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 16 C -0.12 -3.83 5.19 30.82 0.16 -3.67 16 17 C -0.10 -3.00 5.88 30.62 0.18 -2.82 16 18 C -0.14 -4.91 6.08 30.67 0.19 -4.72 16 19 C 0.18 8.27 5.24 86.36 0.45 8.72 16 20 N -0.60 -29.19 2.99 -674.44 -2.01 -31.20 16 21 C -0.26 -14.16 8.33 84.03 0.70 -13.46 16 22 H 0.06 3.36 6.51 -2.91 -0.02 3.34 16 23 C -0.04 -1.95 5.29 84.86 0.45 -1.50 16 24 N -0.93 -53.58 10.74 21.65 0.23 -53.35 16 25 Si 0.95 45.71 29.56 68.60 2.03 47.74 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.53 8.14 -2.38 -0.02 1.52 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 1.02 6.78 -2.39 -0.02 1.01 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 1.92 6.21 -2.38 -0.01 1.90 16 36 H 0.23 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.41 10.72 1.92 -92.70 -0.18 10.54 16 39 H 0.05 2.38 7.50 -2.39 -0.02 2.36 16 40 H 0.06 2.39 7.61 -2.38 -0.02 2.37 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.89 7.20 -2.39 -0.02 1.88 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 47 H 0.06 3.26 6.04 -2.39 -0.01 3.25 16 48 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 49 H 0.25 14.09 8.32 -92.71 -0.77 13.31 16 Total: -1.00 -69.59 386.78 2.37 -67.22 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.77 Total: 23.43 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.97 Total: 17.25 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -5.74 Total: -123.16 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.66 Total: -32.49 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -69.59 2.37 -67.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024502723.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.843 kcal (2) G-P(sol) polarization free energy of solvation -69.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds