Wall clock time and date at job start Tue Mar 31 2020 19:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99859 * 2 1 4 4 C 1.53004 * 109.47013 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46880 * 180.02562 * 4 3 2 6 6 N 1.28442 * 125.18851 * 270.25048 * 5 4 3 7 7 C 1.30870 * 110.92298 * 180.28274 * 6 5 4 8 8 C 1.39675 * 107.86078 * 359.71383 * 7 6 5 9 9 C 1.36597 * 125.19011 * 90.04253 * 5 4 3 10 10 C 1.47169 * 126.88415 * 359.97438 * 9 5 4 11 11 O 1.21624 * 119.99714 * 4.83886 * 10 9 5 12 12 N 1.34774 * 119.99781 * 184.83989 * 10 9 5 13 13 C 1.46503 * 119.99855 * 174.71569 * 12 10 9 14 14 C 1.52997 * 109.46855 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.70260 * 298.12735 * 14 13 12 16 16 C 1.52771 * 109.50631 * 178.02062 * 14 13 12 17 17 C 1.53040 * 109.38361 * 185.70473 * 16 14 13 18 18 C 1.53042 * 109.53600 * 61.23599 * 17 16 14 19 19 C 1.53198 * 109.31463 * 298.63502 * 18 17 16 20 20 N 1.46918 * 108.77340 * 54.63571 * 19 18 17 21 21 C 1.36938 * 120.63023 * 126.36666 * 20 19 18 22 22 H 1.07992 * 120.00335 * 217.69125 * 21 20 19 23 23 C 1.38819 * 119.99758 * 37.69668 * 21 20 19 24 24 N 1.31614 * 120.00065 * 9.78831 * 23 21 20 25 25 Si 1.86796 * 119.99817 * 189.79437 * 23 21 20 26 26 H 1.48505 * 109.47069 * 269.99609 * 25 23 21 27 27 H 1.48501 * 109.47445 * 29.99513 * 25 23 21 28 28 H 1.48503 * 109.47279 * 149.99914 * 25 23 21 29 29 H 1.09009 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47703 * 299.99894 * 1 2 3 31 31 H 1.09000 * 109.47503 * 60.00384 * 1 2 3 32 32 H 1.08998 * 109.46913 * 59.99840 * 3 2 1 33 33 H 1.08992 * 109.47211 * 299.99910 * 3 2 1 34 34 H 1.08993 * 109.47035 * 59.99852 * 4 3 2 35 35 H 1.09003 * 109.46816 * 300.00388 * 4 3 2 36 36 H 1.08005 * 126.06728 * 179.75567 * 7 6 5 37 37 H 1.08002 * 127.31325 * 179.97438 * 8 7 6 38 38 H 0.97000 * 120.00298 * 354.71766 * 12 10 9 39 39 H 1.08998 * 109.46956 * 59.99659 * 13 12 10 40 40 H 1.09003 * 109.46682 * 299.99944 * 13 12 10 41 41 H 1.08993 * 109.56388 * 65.66811 * 16 14 13 42 42 H 1.09003 * 109.35745 * 305.60978 * 16 14 13 43 43 H 1.08999 * 109.45775 * 301.21979 * 17 16 14 44 44 H 1.08994 * 109.45071 * 181.24663 * 17 16 14 45 45 H 1.08998 * 109.49492 * 178.68351 * 18 17 16 46 46 H 1.08992 * 109.49874 * 58.59086 * 18 17 16 47 47 H 1.09003 * 109.58531 * 294.84899 * 19 18 17 48 48 H 1.09003 * 109.70108 * 174.49383 * 19 18 17 49 49 H 0.97000 * 120.00570 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5230 0.0013 6 7 4.4285 3.2014 -1.0481 7 6 4.9510 4.3570 -0.7251 8 6 4.9895 4.4351 0.6689 9 6 4.4516 3.2416 1.1179 10 6 4.2673 2.8272 2.5180 11 8 3.8658 1.7078 2.7730 12 7 4.5433 3.6881 3.5175 13 6 4.2510 3.3182 4.9046 14 6 4.6560 4.4640 5.8340 15 1 5.7288 4.6400 5.7546 16 6 4.3063 4.0992 7.2758 17 6 4.5802 5.2999 8.1842 18 6 3.7015 6.4772 7.7553 19 6 4.0489 6.8707 6.3160 20 7 3.9277 5.6836 5.4589 21 6 3.1461 5.7115 4.3348 22 1 2.5684 4.8424 4.0571 23 6 3.0965 6.8569 3.5522 24 7 3.9391 7.8432 3.7751 25 14 1.8339 6.9986 2.1829 26 1 2.4081 6.4625 0.9227 27 1 0.6218 6.2208 2.5448 28 1 1.4681 8.4252 1.9925 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8574 0.6436 -0.8890 35 1 3.8566 0.6438 0.8909 36 1 5.2913 5.1158 -1.4142 37 1 5.3605 5.2530 1.2688 38 1 4.9355 4.5527 3.3185 39 1 4.8118 2.4212 5.1672 40 1 3.1838 3.1239 5.0115 41 1 4.9153 3.2540 7.5964 42 1 3.2513 3.8314 7.3350 43 1 5.6300 5.5827 8.1056 44 1 4.3521 5.0337 9.2163 45 1 3.8801 7.3246 8.4172 46 1 2.6524 6.1871 7.8100 47 1 5.0711 7.2470 6.2766 48 1 3.3616 7.6429 5.9701 49 1 3.9043 8.6438 3.2285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024502725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:30 Heat of formation + Delta-G solvation = 17.350230 kcal Electronic energy + Delta-G solvation = -30901.071379 eV Core-core repulsion = 26865.777191 eV Total energy + Delta-G solvation = -4035.294188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.28160 -39.06478 -38.03675 -37.66676 -34.46118 -33.58475 -33.09195 -31.36313 -30.12766 -29.92622 -29.21052 -26.40032 -26.11286 -24.91061 -23.51482 -22.50170 -22.16271 -21.25874 -20.49951 -19.55506 -19.11842 -17.79545 -16.70788 -16.35037 -16.12552 -15.88040 -15.64637 -15.52235 -14.95324 -14.63586 -14.23901 -14.10137 -14.00519 -13.74928 -13.55331 -13.41480 -13.24735 -12.90020 -12.63419 -12.46767 -12.13080 -12.10029 -11.81507 -11.51948 -11.41731 -11.24410 -10.99313 -10.83918 -10.65693 -10.59230 -10.33494 -10.20434 -10.04764 -9.83792 -9.69834 -9.53544 -9.37637 -9.00864 -8.77673 -8.64924 -8.25521 -6.62272 -5.91761 -3.45402 1.57643 2.42015 2.87476 3.28672 3.36262 3.39443 3.58106 3.67386 4.00341 4.36911 4.64350 4.86530 5.05654 5.10154 5.19605 5.21356 5.24943 5.25605 5.27792 5.44021 5.46696 5.51734 5.59556 5.63861 5.66295 5.75502 5.91203 5.92928 6.00538 6.11276 6.11888 6.26570 6.32522 6.35516 6.55214 6.66307 6.68937 6.75623 6.80859 6.85695 6.93385 6.99718 7.07265 7.30801 7.56450 7.72449 8.09471 8.30409 8.37943 8.70323 9.10126 9.68821 10.31556 11.14109 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011540 B = 0.004185 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.831192 B = 6688.703944 C = 7455.324066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.054 3.946 4 C 0.123 3.877 5 N -0.263 5.263 6 N -0.286 5.286 7 C -0.003 4.003 8 C -0.175 4.175 9 C -0.026 4.026 10 C 0.579 3.421 11 O -0.564 6.564 12 N -0.671 5.671 13 C 0.138 3.862 14 C 0.160 3.840 15 H 0.033 0.967 16 C -0.127 4.127 17 C -0.107 4.107 18 C -0.145 4.145 19 C 0.176 3.824 20 N -0.587 5.587 21 C -0.256 4.256 22 H 0.063 0.937 23 C 0.021 3.979 24 N -0.893 5.893 25 Si 0.884 3.116 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.289 1.289 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.184 0.816 37 H 0.166 0.834 38 H 0.420 0.580 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.020 0.980 48 H 0.076 0.924 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -8.022 -2.343 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.024 4.024 4 C 0.002 3.998 5 N -0.052 5.052 6 N -0.118 5.118 7 C -0.180 4.180 8 C -0.204 4.204 9 C -0.154 4.154 10 C 0.364 3.636 11 O -0.446 6.446 12 N -0.322 5.322 13 C 0.014 3.986 14 C 0.053 3.947 15 H 0.051 0.949 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.184 4.184 19 C 0.051 3.949 20 N -0.312 5.312 21 C -0.386 4.386 22 H 0.080 0.920 23 C -0.180 4.180 24 N -0.536 5.536 25 Si 0.713 3.287 26 H -0.204 1.204 27 H -0.207 1.207 28 H -0.215 1.215 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.201 0.799 37 H 0.183 0.817 38 H 0.260 0.740 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.039 0.961 48 H 0.094 0.906 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.169 -9.589 -3.146 10.094 hybrid contribution -0.656 1.583 -0.182 1.723 sum -0.826 -8.006 -3.328 8.710 Atomic orbital electron populations 1.22764 0.80330 1.02843 1.00326 1.87766 1.20235 1.26786 1.95557 1.22676 0.92855 0.85424 1.01480 1.21761 0.92235 0.78804 1.06955 1.45381 1.43547 1.14279 1.02010 1.73134 1.17781 1.07081 1.13816 1.23539 1.03844 0.95391 0.95196 1.22425 1.04966 0.97490 0.95470 1.21552 1.09212 0.94727 0.89906 1.16899 0.78746 0.84808 0.83161 1.90720 1.49098 1.20149 1.84609 1.45779 1.61109 1.19600 1.05665 1.21336 1.00902 0.96524 0.79868 1.20669 0.95044 0.87612 0.91352 0.94922 1.21870 1.01242 0.97074 0.96539 1.21351 0.99684 0.96037 0.97388 1.22197 0.99213 0.96725 1.00254 1.20697 0.99007 0.89710 0.85477 1.43982 1.53471 1.07868 1.25847 1.19024 1.19425 1.00056 1.00116 0.91991 1.25183 0.97421 0.98137 0.97260 1.69969 1.35877 1.07117 1.40592 0.86589 0.81933 0.77102 0.83114 1.20354 1.20719 1.21538 0.89300 0.93673 0.94044 0.92099 0.92710 0.87942 0.85488 0.79862 0.81653 0.74036 0.92270 0.91530 0.92948 0.92133 0.92811 0.93699 0.93541 0.92861 0.96140 0.90576 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.37 10.70 -35.23 -0.38 -5.75 16 3 C 0.05 0.79 6.26 37.16 0.23 1.02 16 4 C 0.12 1.83 6.22 -4.04 -0.03 1.81 16 5 N -0.26 -4.46 3.35 -57.14 -0.19 -4.65 16 6 N -0.29 -4.80 11.90 30.59 0.36 -4.43 16 7 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 8 C -0.17 -3.00 10.50 -38.99 -0.41 -3.41 16 9 C -0.03 -0.48 6.96 -82.06 -0.57 -1.05 16 10 C 0.58 11.09 7.79 -12.64 -0.10 10.99 16 11 O -0.56 -11.48 14.68 5.26 0.08 -11.40 16 12 N -0.67 -12.65 3.87 -61.47 -0.24 -12.89 16 13 C 0.14 2.49 4.45 -4.04 -0.02 2.47 16 14 C 0.16 2.95 3.02 -67.82 -0.20 2.75 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 16 C -0.13 -2.04 5.35 -26.83 -0.14 -2.19 16 17 C -0.11 -1.68 5.89 -26.69 -0.16 -1.83 16 18 C -0.14 -2.56 6.08 -26.61 -0.16 -2.73 16 19 C 0.18 3.80 5.23 -3.71 -0.02 3.78 16 20 N -0.59 -12.80 2.94 -165.02 -0.48 -13.28 16 21 C -0.26 -6.11 6.54 -15.06 -0.10 -6.21 16 22 H 0.06 1.55 6.20 -52.49 -0.33 1.22 16 23 C 0.02 0.51 5.03 -17.43 -0.09 0.43 16 24 N -0.89 -23.03 11.50 55.49 0.64 -22.39 16 25 Si 0.88 20.46 29.56 -169.99 -5.03 15.43 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.13 2.01 6.22 -51.93 -0.32 1.68 16 36 H 0.18 2.25 8.06 -52.48 -0.42 1.83 16 37 H 0.17 2.77 7.58 -52.49 -0.40 2.37 16 38 H 0.42 8.31 6.27 -40.82 -0.26 8.05 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.31 7.50 -51.93 -0.39 0.92 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.08 1.86 6.58 -51.93 -0.34 1.51 16 49 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -27.90 391.03 -8.14 -36.04 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.93 Total: 10.40 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.86 Total: 7.05 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.09 Total: -57.65 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.30 Total: -17.15 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.90 -8.14 -36.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024502725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.385 kcal (2) G-P(sol) polarization free energy of solvation -27.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds