Wall clock time and date at job start Tue Mar 31 2020 19:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99859 * 2 1 4 4 C 1.53004 * 109.47013 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46880 * 180.02562 * 4 3 2 6 6 N 1.28442 * 125.18851 * 270.25048 * 5 4 3 7 7 C 1.30870 * 110.92298 * 180.28274 * 6 5 4 8 8 C 1.39675 * 107.86078 * 359.71383 * 7 6 5 9 9 C 1.36597 * 125.19011 * 90.04253 * 5 4 3 10 10 C 1.47169 * 126.88415 * 359.97438 * 9 5 4 11 11 O 1.21624 * 119.99714 * 4.83886 * 10 9 5 12 12 N 1.34774 * 119.99781 * 184.83989 * 10 9 5 13 13 C 1.46503 * 119.99855 * 174.71569 * 12 10 9 14 14 C 1.52997 * 109.46855 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.70260 * 298.12735 * 14 13 12 16 16 C 1.52771 * 109.50631 * 178.02062 * 14 13 12 17 17 C 1.53040 * 109.38361 * 185.70473 * 16 14 13 18 18 C 1.53042 * 109.53600 * 61.23599 * 17 16 14 19 19 C 1.53198 * 109.31463 * 298.63502 * 18 17 16 20 20 N 1.46918 * 108.77340 * 54.63571 * 19 18 17 21 21 C 1.36938 * 120.63023 * 126.36666 * 20 19 18 22 22 H 1.07992 * 120.00335 * 217.69125 * 21 20 19 23 23 C 1.38819 * 119.99758 * 37.69668 * 21 20 19 24 24 N 1.31614 * 120.00065 * 9.78831 * 23 21 20 25 25 Si 1.86796 * 119.99817 * 189.79437 * 23 21 20 26 26 H 1.48505 * 109.47069 * 269.99609 * 25 23 21 27 27 H 1.48501 * 109.47445 * 29.99513 * 25 23 21 28 28 H 1.48503 * 109.47279 * 149.99914 * 25 23 21 29 29 H 1.09009 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47703 * 299.99894 * 1 2 3 31 31 H 1.09000 * 109.47503 * 60.00384 * 1 2 3 32 32 H 1.08998 * 109.46913 * 59.99840 * 3 2 1 33 33 H 1.08992 * 109.47211 * 299.99910 * 3 2 1 34 34 H 1.08993 * 109.47035 * 59.99852 * 4 3 2 35 35 H 1.09003 * 109.46816 * 300.00388 * 4 3 2 36 36 H 1.08005 * 126.06728 * 179.75567 * 7 6 5 37 37 H 1.08002 * 127.31325 * 179.97438 * 8 7 6 38 38 H 0.97000 * 120.00298 * 354.71766 * 12 10 9 39 39 H 1.08998 * 109.46956 * 59.99659 * 13 12 10 40 40 H 1.09003 * 109.46682 * 299.99944 * 13 12 10 41 41 H 1.08993 * 109.56388 * 65.66811 * 16 14 13 42 42 H 1.09003 * 109.35745 * 305.60978 * 16 14 13 43 43 H 1.08999 * 109.45775 * 301.21979 * 17 16 14 44 44 H 1.08994 * 109.45071 * 181.24663 * 17 16 14 45 45 H 1.08998 * 109.49492 * 178.68351 * 18 17 16 46 46 H 1.08992 * 109.49874 * 58.59086 * 18 17 16 47 47 H 1.09003 * 109.58531 * 294.84899 * 19 18 17 48 48 H 1.09003 * 109.70108 * 174.49383 * 19 18 17 49 49 H 0.97000 * 120.00570 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5230 0.0013 6 7 4.4285 3.2014 -1.0481 7 6 4.9510 4.3570 -0.7251 8 6 4.9895 4.4351 0.6689 9 6 4.4516 3.2416 1.1179 10 6 4.2673 2.8272 2.5180 11 8 3.8658 1.7078 2.7730 12 7 4.5433 3.6881 3.5175 13 6 4.2510 3.3182 4.9046 14 6 4.6560 4.4640 5.8340 15 1 5.7288 4.6400 5.7546 16 6 4.3063 4.0992 7.2758 17 6 4.5802 5.2999 8.1842 18 6 3.7015 6.4772 7.7553 19 6 4.0489 6.8707 6.3160 20 7 3.9277 5.6836 5.4589 21 6 3.1461 5.7115 4.3348 22 1 2.5684 4.8424 4.0571 23 6 3.0965 6.8569 3.5522 24 7 3.9391 7.8432 3.7751 25 14 1.8339 6.9986 2.1829 26 1 2.4081 6.4625 0.9227 27 1 0.6218 6.2208 2.5448 28 1 1.4681 8.4252 1.9925 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8574 0.6436 -0.8890 35 1 3.8566 0.6438 0.8909 36 1 5.2913 5.1158 -1.4142 37 1 5.3605 5.2530 1.2688 38 1 4.9355 4.5527 3.3185 39 1 4.8118 2.4212 5.1672 40 1 3.1838 3.1239 5.0115 41 1 4.9153 3.2540 7.5964 42 1 3.2513 3.8314 7.3350 43 1 5.6300 5.5827 8.1056 44 1 4.3521 5.0337 9.2163 45 1 3.8801 7.3246 8.4172 46 1 2.6524 6.1871 7.8100 47 1 5.0711 7.2470 6.2766 48 1 3.3616 7.6429 5.9701 49 1 3.9043 8.6438 3.2285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024502725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:29 Heat of formation + Delta-G solvation = 0.797467 kcal Electronic energy + Delta-G solvation = -30901.789160 eV Core-core repulsion = 26865.777191 eV Total energy + Delta-G solvation = -4036.011970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.59245 -40.58993 -39.23529 -39.07588 -35.91001 -34.91592 -34.79190 -32.82005 -31.79399 -31.39005 -30.38180 -27.73677 -27.32407 -26.55844 -24.74593 -23.96355 -23.68138 -22.64238 -21.94600 -20.97881 -20.60906 -19.22120 -18.13966 -17.80434 -17.32466 -17.21517 -17.14765 -16.90580 -16.29137 -16.10814 -15.76515 -15.60395 -15.34840 -15.15212 -14.93109 -14.74499 -14.53010 -14.50914 -14.06139 -13.88862 -13.60348 -13.43027 -13.16598 -12.82343 -12.79144 -12.65083 -12.58963 -12.41531 -12.37315 -12.06163 -11.92462 -11.76933 -11.49788 -11.24660 -11.06846 -10.94102 -10.86674 -10.52222 -10.34259 -10.11682 -9.80173 -8.43958 -7.81811 -5.35743 0.17965 1.16806 1.40093 1.46133 1.48336 1.59078 2.15131 2.29719 2.48606 2.84506 3.33845 3.44041 3.57946 3.69940 3.73749 3.89005 4.01125 4.06137 4.15488 4.24824 4.29590 4.38079 4.39469 4.45160 4.48824 4.53679 4.56913 4.65107 4.68610 4.73199 4.78424 4.84869 4.89284 5.02585 5.16856 5.25202 5.30732 5.39050 5.45680 5.49263 5.56894 5.63311 5.64911 5.76828 5.85293 5.92000 6.49456 6.58151 6.97012 7.17484 7.23265 7.88510 8.46300 9.21280 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011540 B = 0.004185 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.831192 B = 6688.703944 C = 7455.324066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.063 3.937 4 C 0.122 3.878 5 N -0.265 5.265 6 N -0.290 5.290 7 C 0.000 4.000 8 C -0.180 4.180 9 C -0.048 4.048 10 C 0.579 3.421 11 O -0.580 6.580 12 N -0.673 5.673 13 C 0.142 3.858 14 C 0.160 3.840 15 H 0.034 0.966 16 C -0.122 4.122 17 C -0.102 4.102 18 C -0.136 4.136 19 C 0.182 3.818 20 N -0.600 5.600 21 C -0.239 4.239 22 H 0.051 0.949 23 C -0.011 4.011 24 N -0.915 5.915 25 Si 0.922 3.078 26 H -0.275 1.275 27 H -0.292 1.292 28 H -0.296 1.296 29 H 0.113 0.887 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.218 0.782 37 H 0.165 0.835 38 H 0.416 0.584 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.004 0.996 48 H 0.041 0.959 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 -9.122 -2.086 9.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.015 4.015 4 C 0.002 3.998 5 N -0.054 5.054 6 N -0.122 5.122 7 C -0.176 4.176 8 C -0.209 4.209 9 C -0.175 4.175 10 C 0.364 3.636 11 O -0.462 6.462 12 N -0.322 5.322 13 C 0.018 3.982 14 C 0.054 3.946 15 H 0.052 0.948 16 C -0.162 4.162 17 C -0.140 4.140 18 C -0.175 4.175 19 C 0.056 3.944 20 N -0.325 5.325 21 C -0.370 4.370 22 H 0.068 0.932 23 C -0.209 4.209 24 N -0.559 5.559 25 Si 0.752 3.248 26 H -0.201 1.201 27 H -0.218 1.218 28 H -0.222 1.222 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.235 0.765 37 H 0.183 0.817 38 H 0.254 0.746 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.022 0.978 48 H 0.059 0.941 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.154 -10.715 -2.874 11.095 hybrid contribution -0.785 1.877 -0.252 2.050 sum -0.631 -8.838 -3.127 9.396 Atomic orbital electron populations 1.23015 0.78651 1.04630 1.00727 1.87751 1.22081 1.26128 1.95578 1.22497 0.92777 0.85770 1.00459 1.21848 0.92329 0.78121 1.07468 1.45559 1.43453 1.14731 1.01652 1.73142 1.17868 1.07461 1.13696 1.24102 1.02830 0.95623 0.95076 1.22553 1.04832 0.97147 0.96383 1.21539 1.10539 0.95637 0.89799 1.17045 0.78272 0.84559 0.83687 1.90703 1.49823 1.20740 1.84978 1.45787 1.61034 1.19309 1.06062 1.21351 1.00093 0.97203 0.79559 1.20814 0.94545 0.86106 0.93123 0.94826 1.21826 1.01409 0.98386 0.94546 1.21338 0.99317 0.94613 0.98730 1.22059 0.99220 0.98516 0.97726 1.20519 0.97078 0.88966 0.87819 1.44151 1.53781 1.09026 1.25517 1.18954 1.18697 0.99176 1.00188 0.93193 1.25471 0.98499 0.98381 0.98547 1.70047 1.37134 1.07357 1.41374 0.85997 0.80431 0.76218 0.82146 1.20137 1.21814 1.22214 0.86884 0.94173 0.92740 0.94645 0.92100 0.85697 0.86620 0.76534 0.81733 0.74600 0.90286 0.93251 0.89892 0.92815 0.92366 0.90830 0.91806 0.93642 0.97765 0.94055 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.40 -10.73 10.70 -148.98 -1.59 -12.32 16 3 C 0.06 1.83 6.26 71.98 0.45 2.28 16 4 C 0.12 3.58 6.22 86.38 0.54 4.11 16 5 N -0.26 -8.81 3.35 -334.69 -1.12 -9.93 16 6 N -0.29 -9.29 11.90 -57.13 -0.68 -9.97 16 7 C 0.00 -0.01 12.03 85.18 1.02 1.02 16 8 C -0.18 -6.09 10.50 22.66 0.24 -5.85 16 9 C -0.05 -1.72 6.96 40.79 0.28 -1.44 16 10 C 0.58 22.30 7.79 86.59 0.67 22.97 16 11 O -0.58 -23.74 14.68 -4.11 -0.06 -23.80 16 12 N -0.67 -25.44 3.87 -466.63 -1.81 -27.25 16 13 C 0.14 5.03 4.45 86.38 0.38 5.42 16 14 C 0.16 5.71 3.02 44.83 0.14 5.85 16 15 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 16 C -0.12 -3.59 5.35 30.53 0.16 -3.43 16 17 C -0.10 -2.89 5.89 30.62 0.18 -2.71 16 18 C -0.14 -4.62 6.08 30.67 0.19 -4.43 16 19 C 0.18 7.85 5.23 86.37 0.45 8.30 16 20 N -0.60 -26.14 2.94 -676.02 -1.98 -28.13 16 21 C -0.24 -11.56 6.54 84.04 0.55 -11.01 16 22 H 0.05 2.54 6.20 -2.91 -0.02 2.53 16 23 C -0.01 -0.54 5.03 84.86 0.43 -0.11 16 24 N -0.91 -48.11 11.50 21.65 0.25 -47.86 16 25 Si 0.92 42.67 29.56 68.60 2.03 44.70 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 29 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.12 3.66 6.22 -2.39 -0.01 3.64 16 36 H 0.22 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.17 5.52 7.58 -2.91 -0.02 5.50 16 38 H 0.42 16.59 6.27 -92.71 -0.58 16.01 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.93 7.50 -2.39 -0.02 1.91 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 48 H 0.04 2.06 6.58 -2.39 -0.02 2.04 16 49 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 Total: -1.00 -60.13 391.03 2.33 -57.79 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.37 Total: 34.03 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 6.94 Total: 22.75 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -5.34 Total: -123.14 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.65 Total: -36.12 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -60.13 2.33 -57.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024502725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.591 kcal (2) G-P(sol) polarization free energy of solvation -60.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds