Wall clock time and date at job start Tue Mar 31 2020 19:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99980 * 2 1 4 4 C 1.53006 * 109.47110 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47103 * 179.97438 * 4 3 2 6 6 C 1.35037 * 124.88175 * 125.00191 * 5 4 3 7 7 C 1.35365 * 107.22726 * 180.02562 * 6 5 4 8 8 C 1.41501 * 105.50306 * 359.97438 * 7 6 5 9 9 C 1.47716 * 126.51708 * 179.97438 * 8 7 6 10 10 O 1.21570 * 119.99844 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99964 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99902 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47094 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.70087 * 60.22045 * 13 12 11 15 15 C 1.53625 * 109.66427 * 180.81420 * 13 12 11 16 16 C 1.53037 * 109.24046 * 174.54954 * 15 13 12 17 17 C 1.53043 * 109.53648 * 298.51154 * 16 15 13 18 18 C 1.53190 * 109.31582 * 61.36867 * 17 16 15 19 19 N 1.46924 * 108.77057 * 305.36288 * 18 17 16 20 20 C 1.36941 * 120.63015 * 233.58353 * 19 18 17 21 21 H 1.08007 * 119.99669 * 148.83187 * 20 19 18 22 22 C 1.38806 * 120.00110 * 329.10295 * 20 19 18 23 23 N 1.31618 * 120.00181 * 345.61048 * 22 20 19 24 24 Si 1.86802 * 120.00098 * 165.60372 * 22 20 19 25 25 H 1.48497 * 109.46961 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46972 * 120.00430 * 24 22 20 27 27 H 1.48500 * 109.47373 * 240.00588 * 24 22 20 28 28 N 1.28470 * 124.88527 * 305.32821 * 5 4 3 29 29 H 1.09001 * 109.46578 * 59.99711 * 1 2 3 30 30 H 1.08990 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46787 * 300.00617 * 1 2 3 32 32 H 1.09001 * 109.47397 * 60.00391 * 3 2 1 33 33 H 1.09002 * 109.47273 * 300.00060 * 3 2 1 34 34 H 1.09001 * 109.46783 * 59.99879 * 4 3 2 35 35 H 1.08998 * 109.46767 * 299.99629 * 4 3 2 36 36 H 1.07998 * 126.38534 * 0.04606 * 6 5 4 37 37 H 1.07998 * 127.24557 * 180.02562 * 7 6 5 38 38 H 0.96999 * 119.99610 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47486 * 60.00065 * 12 11 9 40 40 H 1.09003 * 109.46991 * 299.99425 * 12 11 9 41 41 H 1.08996 * 109.63180 * 54.55726 * 15 13 12 42 42 H 1.08995 * 109.45838 * 294.43412 * 15 13 12 43 43 H 1.09004 * 109.46198 * 178.49202 * 16 15 13 44 44 H 1.09005 * 109.45257 * 58.52199 * 16 15 13 45 45 H 1.09006 * 109.49893 * 301.41159 * 17 16 15 46 46 H 1.09005 * 109.52281 * 181.33409 * 17 16 15 47 47 H 1.09002 * 109.59098 * 185.57839 * 18 17 16 48 48 H 1.08997 * 109.70345 * 65.21729 * 18 17 16 49 49 H 0.96996 * 120.00496 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0264 2.9702 0.9056 7 6 5.3353 4.2445 0.5692 8 6 4.5725 4.5255 -0.5890 9 6 4.5569 5.7945 -1.3447 10 8 5.2489 6.7262 -0.9826 11 7 3.7755 5.9196 -2.4357 12 6 3.7605 7.1779 -3.1856 13 6 2.7976 7.0554 -4.3683 14 1 1.7925 6.8440 -4.0035 15 6 2.7937 8.3660 -5.1698 16 6 1.9347 8.1878 -6.4237 17 6 2.5343 7.0878 -7.3028 18 6 2.5389 5.7662 -6.5281 19 7 3.2394 5.9683 -5.2526 20 6 4.2807 5.1552 -4.8920 21 1 5.0848 5.5447 -4.2852 22 6 4.3055 3.8322 -5.3111 23 7 3.2186 3.2776 -5.8043 24 14 5.8816 2.8388 -5.1752 25 1 6.9522 3.6864 -4.5918 26 1 5.6508 1.6615 -4.3001 27 1 6.2947 2.3786 -6.5254 28 7 3.8732 3.4418 -0.8612 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6436 0.8891 36 1 5.4222 2.4148 1.7430 37 1 6.0205 4.9069 1.0773 38 1 3.2231 5.1763 -2.7244 39 1 4.7634 7.3934 -3.5540 40 1 3.4318 7.9862 -2.5323 41 1 3.8130 8.6207 -5.4601 42 1 2.3798 9.1658 -4.5558 43 1 1.9077 9.1240 -6.9815 44 1 0.9219 7.9087 -6.1333 45 1 3.5561 7.3546 -7.5732 46 1 1.9358 6.9774 -8.2071 47 1 3.0541 5.0027 -7.1110 48 1 1.5138 5.4495 -6.3358 49 1 3.2359 2.3532 -6.0975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024548063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:35 Heat of formation + Delta-G solvation = 22.280173 kcal Electronic energy + Delta-G solvation = -30418.105644 eV Core-core repulsion = 26383.025234 eV Total energy + Delta-G solvation = -4035.080410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.43803 -38.92751 -38.14926 -37.53111 -34.08120 -33.88345 -32.99490 -30.99189 -30.30797 -29.85580 -29.36941 -26.69964 -25.97758 -24.93318 -23.71801 -22.14268 -21.89635 -21.18611 -20.56292 -19.42878 -18.99013 -17.76483 -16.94131 -16.44560 -16.18991 -15.99292 -15.60081 -15.48048 -15.11731 -14.73560 -14.20712 -13.99841 -13.84862 -13.59714 -13.47394 -13.27678 -13.18862 -12.88031 -12.70493 -12.38298 -12.18069 -11.95702 -11.79810 -11.66444 -11.53175 -11.15325 -10.91354 -10.73352 -10.57051 -10.48269 -10.24315 -10.09720 -9.95142 -9.93518 -9.61282 -9.44172 -9.25821 -9.05590 -8.87619 -8.50995 -8.10869 -6.59504 -5.78298 -3.23453 1.94165 2.35474 2.39816 3.36288 3.44775 3.49927 3.61793 3.91313 4.05263 4.41398 4.50061 4.67269 4.89344 4.93305 5.04667 5.11280 5.19348 5.28612 5.38908 5.45034 5.47132 5.47798 5.57374 5.64847 5.68702 5.72766 5.87265 5.96375 6.01957 6.11237 6.19874 6.34622 6.39358 6.45887 6.63147 6.63737 6.75072 6.76762 6.77713 6.89466 6.92722 7.03162 7.25412 7.41794 7.68641 7.86747 8.06650 8.44669 8.47506 8.94832 9.22802 9.84070 10.41746 11.28833 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004065 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.069237 B = 6885.970629 C = 7519.260902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.286 5.286 6 C -0.024 4.024 7 C -0.182 4.182 8 C -0.005 4.005 9 C 0.594 3.406 10 O -0.559 6.559 11 N -0.678 5.678 12 C 0.134 3.866 13 C 0.160 3.840 14 H 0.032 0.968 15 C -0.127 4.127 16 C -0.107 4.107 17 C -0.144 4.144 18 C 0.174 3.826 19 N -0.588 5.588 20 C -0.248 4.248 21 H 0.070 0.930 22 C 0.014 3.986 23 N -0.897 5.897 24 Si 0.890 3.110 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.290 1.290 28 N -0.245 5.245 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.179 0.821 37 H 0.160 0.840 38 H 0.421 0.579 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.084 0.916 48 H 0.017 0.983 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 -2.345 10.998 12.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.076 5.076 6 C -0.166 4.166 7 C -0.210 4.210 8 C -0.166 4.166 9 C 0.378 3.622 10 O -0.438 6.438 11 N -0.329 5.329 12 C 0.010 3.990 13 C 0.053 3.947 14 H 0.049 0.951 15 C -0.166 4.166 16 C -0.145 4.145 17 C -0.183 4.183 18 C 0.049 3.951 19 N -0.312 5.312 20 C -0.378 4.378 21 H 0.087 0.913 22 C -0.185 4.185 23 N -0.542 5.542 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.219 1.219 27 H -0.217 1.217 28 N -0.080 5.080 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.196 0.804 37 H 0.178 0.822 38 H 0.260 0.740 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.036 0.964 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.598 -2.598 10.420 11.682 hybrid contribution 0.981 -0.613 0.385 1.220 sum -3.616 -3.210 10.806 11.838 Atomic orbital electron populations 1.22777 0.79966 1.02959 1.00522 1.87756 1.20588 1.26898 1.95643 1.22657 0.92166 0.85452 1.02476 1.21622 0.93090 0.78823 1.05923 1.45327 1.31390 1.11508 1.19342 1.22799 0.98693 0.96616 0.98493 1.21747 1.04762 0.95946 0.98566 1.22131 1.01144 0.94312 0.98992 1.16870 0.80365 0.84640 0.80360 1.90717 1.43719 1.39587 1.69742 1.45907 1.44011 1.17408 1.25528 1.21324 1.00717 0.84987 0.92000 1.20820 0.95011 0.89442 0.89432 0.95084 1.22009 1.00141 0.97582 0.96915 1.21360 0.98765 0.97952 0.96395 1.22193 0.99696 0.98673 0.97740 1.20739 0.95488 0.92634 0.86286 1.44095 1.37623 1.33563 1.15919 1.19200 0.97972 0.89863 1.30735 0.91273 1.24987 0.96247 0.96233 1.01068 1.70010 1.25531 1.12496 1.46114 0.86397 0.84062 0.80325 0.77177 1.20287 1.21858 1.21696 1.73704 1.22489 0.97419 1.14373 0.93343 0.89304 0.93988 0.92658 0.90717 0.87911 0.87275 0.80374 0.82199 0.73963 0.91410 0.92505 0.92027 0.93069 0.93762 0.92931 0.92825 0.93606 0.89811 0.96444 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.56 10.70 -35.23 -0.38 -4.94 16 3 C 0.05 0.59 6.04 37.16 0.22 0.81 16 4 C 0.13 1.44 6.77 -4.04 -0.03 1.41 16 5 N -0.29 -4.15 3.41 -61.33 -0.21 -4.36 16 6 C -0.02 -0.31 11.40 -17.17 -0.20 -0.50 16 7 C -0.18 -2.83 10.81 -39.36 -0.43 -3.25 16 8 C 0.00 -0.09 7.13 -82.76 -0.59 -0.68 16 9 C 0.59 12.53 7.83 -12.39 -0.10 12.44 16 10 O -0.56 -12.72 16.93 5.30 0.09 -12.63 16 11 N -0.68 -14.22 3.84 -61.29 -0.24 -14.45 16 12 C 0.13 2.65 4.44 -4.04 -0.02 2.63 16 13 C 0.16 3.18 3.03 -67.37 -0.20 2.98 16 14 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 15 C -0.13 -2.17 5.40 -26.39 -0.14 -2.31 16 16 C -0.11 -1.78 5.88 -26.69 -0.16 -1.94 16 17 C -0.14 -2.70 6.08 -26.61 -0.16 -2.87 16 18 C 0.17 3.99 5.27 -3.71 -0.02 3.97 16 19 N -0.59 -13.77 2.97 -164.52 -0.49 -14.26 16 20 C -0.25 -6.41 6.95 -15.06 -0.10 -6.51 16 21 H 0.07 1.87 5.88 -52.48 -0.31 1.56 16 22 C 0.01 0.37 4.96 -17.43 -0.09 0.29 16 23 N -0.90 -24.86 11.24 55.49 0.62 -24.23 16 24 Si 0.89 22.15 29.58 -169.99 -5.03 17.12 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 N -0.24 -4.50 11.35 33.42 0.38 -4.12 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.11 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.42 9.45 7.11 -40.82 -0.29 9.16 16 39 H 0.07 1.45 7.43 -51.93 -0.39 1.06 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 2.17 6.20 -51.93 -0.32 1.85 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -31.59 395.46 -8.22 -39.81 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -8.04 Total: 8.22 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -0.89 Total: 7.89 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.07 Total: -61.42 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.29 Total: -17.57 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.59 -8.22 -39.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024548063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.087 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds