Wall clock time and date at job start Tue Mar 31 2020 19:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99980 * 2 1 4 4 C 1.53006 * 109.47110 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47103 * 179.97438 * 4 3 2 6 6 C 1.35037 * 124.88175 * 125.00191 * 5 4 3 7 7 C 1.35365 * 107.22726 * 180.02562 * 6 5 4 8 8 C 1.41501 * 105.50306 * 359.97438 * 7 6 5 9 9 C 1.47716 * 126.51708 * 179.97438 * 8 7 6 10 10 O 1.21570 * 119.99844 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99964 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99902 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47094 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.70087 * 60.22045 * 13 12 11 15 15 C 1.53625 * 109.66427 * 180.81420 * 13 12 11 16 16 C 1.53037 * 109.24046 * 174.54954 * 15 13 12 17 17 C 1.53043 * 109.53648 * 298.51154 * 16 15 13 18 18 C 1.53190 * 109.31582 * 61.36867 * 17 16 15 19 19 N 1.46924 * 108.77057 * 305.36288 * 18 17 16 20 20 C 1.36941 * 120.63015 * 233.58353 * 19 18 17 21 21 H 1.08007 * 119.99669 * 148.83187 * 20 19 18 22 22 C 1.38806 * 120.00110 * 329.10295 * 20 19 18 23 23 N 1.31618 * 120.00181 * 345.61048 * 22 20 19 24 24 Si 1.86802 * 120.00098 * 165.60372 * 22 20 19 25 25 H 1.48497 * 109.46961 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46972 * 120.00430 * 24 22 20 27 27 H 1.48500 * 109.47373 * 240.00588 * 24 22 20 28 28 N 1.28470 * 124.88527 * 305.32821 * 5 4 3 29 29 H 1.09001 * 109.46578 * 59.99711 * 1 2 3 30 30 H 1.08990 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46787 * 300.00617 * 1 2 3 32 32 H 1.09001 * 109.47397 * 60.00391 * 3 2 1 33 33 H 1.09002 * 109.47273 * 300.00060 * 3 2 1 34 34 H 1.09001 * 109.46783 * 59.99879 * 4 3 2 35 35 H 1.08998 * 109.46767 * 299.99629 * 4 3 2 36 36 H 1.07998 * 126.38534 * 0.04606 * 6 5 4 37 37 H 1.07998 * 127.24557 * 180.02562 * 7 6 5 38 38 H 0.96999 * 119.99610 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47486 * 60.00065 * 12 11 9 40 40 H 1.09003 * 109.46991 * 299.99425 * 12 11 9 41 41 H 1.08996 * 109.63180 * 54.55726 * 15 13 12 42 42 H 1.08995 * 109.45838 * 294.43412 * 15 13 12 43 43 H 1.09004 * 109.46198 * 178.49202 * 16 15 13 44 44 H 1.09005 * 109.45257 * 58.52199 * 16 15 13 45 45 H 1.09006 * 109.49893 * 301.41159 * 17 16 15 46 46 H 1.09005 * 109.52281 * 181.33409 * 17 16 15 47 47 H 1.09002 * 109.59098 * 185.57839 * 18 17 16 48 48 H 1.08997 * 109.70345 * 65.21729 * 18 17 16 49 49 H 0.96996 * 120.00496 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0264 2.9702 0.9056 7 6 5.3353 4.2445 0.5692 8 6 4.5725 4.5255 -0.5890 9 6 4.5569 5.7945 -1.3447 10 8 5.2489 6.7262 -0.9826 11 7 3.7755 5.9196 -2.4357 12 6 3.7605 7.1779 -3.1856 13 6 2.7976 7.0554 -4.3683 14 1 1.7925 6.8440 -4.0035 15 6 2.7937 8.3660 -5.1698 16 6 1.9347 8.1878 -6.4237 17 6 2.5343 7.0878 -7.3028 18 6 2.5389 5.7662 -6.5281 19 7 3.2394 5.9683 -5.2526 20 6 4.2807 5.1552 -4.8920 21 1 5.0848 5.5447 -4.2852 22 6 4.3055 3.8322 -5.3111 23 7 3.2186 3.2776 -5.8043 24 14 5.8816 2.8388 -5.1752 25 1 6.9522 3.6864 -4.5918 26 1 5.6508 1.6615 -4.3001 27 1 6.2947 2.3786 -6.5254 28 7 3.8732 3.4418 -0.8612 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6436 0.8891 36 1 5.4222 2.4148 1.7430 37 1 6.0205 4.9069 1.0773 38 1 3.2231 5.1763 -2.7244 39 1 4.7634 7.3934 -3.5540 40 1 3.4318 7.9862 -2.5323 41 1 3.8130 8.6207 -5.4601 42 1 2.3798 9.1658 -4.5558 43 1 1.9077 9.1240 -6.9815 44 1 0.9219 7.9087 -6.1333 45 1 3.5561 7.3546 -7.5732 46 1 1.9358 6.9774 -8.2071 47 1 3.0541 5.0027 -7.1110 48 1 1.5138 5.4495 -6.3358 49 1 3.2359 2.3532 -6.0975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024548063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:33 Heat of formation + Delta-G solvation = 1.374729 kcal Electronic energy + Delta-G solvation = -30419.012172 eV Core-core repulsion = 26383.025234 eV Total energy + Delta-G solvation = -4035.986938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.63026 -40.56803 -39.23175 -38.99366 -35.71067 -34.96024 -34.88905 -32.50287 -31.73646 -31.53162 -30.47440 -27.92384 -27.32047 -26.57808 -24.96772 -23.81489 -23.16723 -22.34927 -22.16622 -20.95842 -20.55327 -19.04295 -18.32518 -17.78368 -17.48072 -17.25933 -17.03646 -16.79139 -16.55121 -16.09847 -15.74356 -15.69276 -15.20454 -14.99103 -14.83362 -14.70377 -14.53928 -14.25158 -14.07304 -13.97103 -13.59387 -13.43814 -13.03485 -12.89474 -12.82511 -12.65511 -12.58955 -12.36669 -12.32619 -12.05999 -11.82198 -11.78021 -11.52754 -11.29736 -11.09715 -10.92827 -10.81039 -10.52978 -10.30579 -10.07623 -9.78171 -8.55061 -7.84220 -5.29167 0.59229 1.21756 1.32763 1.36363 1.37753 1.45349 2.32731 2.47314 2.52338 2.78244 3.31942 3.44376 3.58766 3.78673 3.79525 3.99457 4.00179 4.12802 4.21241 4.23308 4.28411 4.41506 4.43262 4.47250 4.55546 4.57519 4.64646 4.65662 4.71272 4.78167 4.79906 4.81692 4.87476 5.00474 5.14220 5.23041 5.29208 5.37100 5.38520 5.47261 5.60891 5.63650 5.75345 5.84380 5.86043 5.99026 6.44033 6.61251 6.96894 7.20230 7.29694 7.88794 8.41325 9.20296 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004065 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.069237 B = 6885.970629 C = 7519.260902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.057 3.943 4 C 0.122 3.878 5 N -0.283 5.283 6 C 0.008 3.992 7 C -0.201 4.201 8 C -0.040 4.040 9 C 0.589 3.411 10 O -0.583 6.583 11 N -0.683 5.683 12 C 0.137 3.863 13 C 0.159 3.841 14 H 0.030 0.970 15 C -0.120 4.120 16 C -0.102 4.102 17 C -0.135 4.135 18 C 0.179 3.821 19 N -0.601 5.601 20 C -0.230 4.230 21 H 0.056 0.944 22 C -0.026 4.026 23 N -0.920 5.920 24 Si 0.932 3.068 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.290 1.290 28 N -0.281 5.281 29 H 0.038 0.962 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.236 0.764 37 H 0.171 0.829 38 H 0.413 0.587 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.000 1.000 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 -2.171 12.666 13.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.021 4.021 4 C 0.002 3.998 5 N -0.072 5.072 6 C -0.134 4.134 7 C -0.229 4.229 8 C -0.200 4.200 9 C 0.375 3.625 10 O -0.464 6.464 11 N -0.331 5.331 12 C 0.013 3.987 13 C 0.053 3.947 14 H 0.048 0.952 15 C -0.160 4.160 16 C -0.140 4.140 17 C -0.174 4.174 18 C 0.053 3.947 19 N -0.326 5.326 20 C -0.361 4.361 21 H 0.074 0.926 22 C -0.223 4.223 23 N -0.566 5.566 24 Si 0.763 3.237 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.217 1.217 28 N -0.117 5.117 29 H 0.057 0.943 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.175 0.825 36 H 0.252 0.748 37 H 0.188 0.812 38 H 0.250 0.750 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.018 0.982 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.812 -2.397 12.077 13.219 hybrid contribution 0.998 -0.709 -0.065 1.226 sum -3.815 -3.107 12.012 12.980 Atomic orbital electron populations 1.22978 0.78719 1.04376 1.00813 1.87733 1.22006 1.26627 1.95662 1.22516 0.92610 0.85481 1.01503 1.21926 0.92733 0.77478 1.07638 1.45668 1.31221 1.11647 1.18712 1.23571 0.96113 0.95519 0.98210 1.22026 1.05264 0.97691 0.97907 1.22047 1.03353 0.93934 1.00633 1.17253 0.79630 0.85416 0.80225 1.90674 1.44584 1.40717 1.70432 1.45965 1.43973 1.17394 1.25807 1.21352 0.99680 0.85323 0.92340 1.20991 0.94550 0.89801 0.89350 0.95241 1.21956 1.00358 0.96411 0.97246 1.21346 0.98410 0.98362 0.95845 1.22045 1.00031 0.96938 0.98339 1.20572 0.93667 0.94199 0.86223 1.44281 1.37264 1.34051 1.16955 1.19134 0.98028 0.89867 1.29024 0.92603 1.25371 0.97714 0.97080 1.02144 1.70104 1.26474 1.12284 1.47773 0.85738 0.82041 0.79155 0.76738 1.21040 1.22338 1.21652 1.73639 1.23588 0.98220 1.16282 0.94344 0.87381 0.92431 0.91329 0.94044 0.89171 0.82525 0.74762 0.81156 0.74983 0.93321 0.90385 0.92606 0.89834 0.90533 0.92502 0.93510 0.91669 0.93302 0.98233 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -8.90 10.70 -148.98 -1.59 -10.50 16 3 C 0.06 1.28 6.04 71.98 0.43 1.72 16 4 C 0.12 2.54 6.77 86.38 0.58 3.12 16 5 N -0.28 -7.75 3.41 -347.94 -1.19 -8.93 16 6 C 0.01 0.17 11.40 83.54 0.95 1.13 16 7 C -0.20 -5.99 10.81 22.41 0.24 -5.75 16 8 C -0.04 -1.55 7.13 42.46 0.30 -1.25 16 9 C 0.59 25.63 7.83 86.75 0.68 26.31 16 10 O -0.58 -27.17 16.93 -3.94 -0.07 -27.24 16 11 N -0.68 -29.58 3.84 -466.10 -1.79 -31.37 16 12 C 0.14 5.47 4.44 86.38 0.38 5.85 16 13 C 0.16 6.29 3.03 45.12 0.14 6.42 16 14 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 15 C -0.12 -3.85 5.40 30.82 0.17 -3.68 16 16 C -0.10 -3.10 5.88 30.62 0.18 -2.92 16 17 C -0.13 -4.89 6.08 30.67 0.19 -4.70 16 18 C 0.18 8.34 5.27 86.36 0.45 8.79 16 19 N -0.60 -28.67 2.97 -674.41 -2.00 -30.67 16 20 C -0.23 -12.23 6.95 84.03 0.58 -11.65 16 21 H 0.06 3.12 5.88 -2.91 -0.02 3.11 16 22 C -0.03 -1.47 4.96 84.86 0.42 -1.05 16 23 N -0.92 -52.87 11.24 21.65 0.24 -52.63 16 24 Si 0.93 46.89 29.58 68.60 2.03 48.92 16 25 H -0.28 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 27 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 28 N -0.28 -10.46 11.35 -48.17 -0.55 -11.01 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.16 1.77 8.04 -2.39 -0.02 1.75 16 36 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.17 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.41 19.37 7.11 -92.71 -0.66 18.71 16 39 H 0.05 2.12 7.43 -2.39 -0.02 2.11 16 40 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 47 H 0.05 2.61 6.20 -2.39 -0.01 2.60 16 48 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -72.41 395.46 2.33 -70.08 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.28 Total: 29.29 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 6.96 Total: 24.05 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -5.28 Total: -134.61 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.66 Total: -37.74 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -72.41 2.33 -70.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024548063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.452 kcal (2) G-P(sol) polarization free energy of solvation -72.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds