Wall clock time and date at job start Tue Mar 31 2020 19:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99665 * 2 1 4 4 C 1.53009 * 109.46915 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46808 * 179.97438 * 4 3 2 6 6 C 1.34274 * 125.75457 * 125.30703 * 5 4 3 7 7 C 1.38040 * 107.41472 * 180.10662 * 6 5 4 8 8 C 1.47434 * 126.41000 * 179.86837 * 7 6 5 9 9 O 1.21602 * 119.99602 * 359.71902 * 8 7 6 10 10 N 1.34770 * 120.00096 * 179.71179 * 8 7 6 11 11 C 1.46492 * 120.00257 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47542 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.70186 * 299.90840 * 12 11 10 14 14 C 1.52753 * 109.51530 * 179.78500 * 12 11 10 15 15 C 1.53035 * 109.38530 * 185.70574 * 14 12 11 16 16 C 1.53038 * 109.53721 * 61.24349 * 15 14 12 17 17 C 1.53190 * 109.31045 * 298.63055 * 16 15 14 18 18 N 1.46928 * 108.77407 * 54.64010 * 17 16 15 19 19 C 1.36936 * 120.63269 * 126.37107 * 18 17 16 20 20 H 1.07997 * 119.99404 * 211.20806 * 19 18 17 21 21 C 1.38815 * 119.99981 * 31.20182 * 19 18 17 22 22 N 1.31621 * 119.99531 * 196.91557 * 21 19 18 23 23 Si 1.86793 * 120.00186 * 16.91493 * 21 19 18 24 24 H 1.48494 * 109.47340 * 271.18368 * 23 21 19 25 25 H 1.48507 * 109.46971 * 31.17747 * 23 21 19 26 26 H 1.48499 * 109.47320 * 151.17854 * 23 21 19 27 27 C 1.41283 * 107.17467 * 359.60989 * 7 6 5 28 28 N 1.30448 * 108.02549 * 0.23819 * 27 7 6 29 29 H 1.08997 * 109.47212 * 60.00179 * 1 2 3 30 30 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46936 * 299.99444 * 1 2 3 32 32 H 1.08993 * 109.47695 * 60.00455 * 3 2 1 33 33 H 1.09000 * 109.47205 * 299.99596 * 3 2 1 34 34 H 1.08992 * 109.47088 * 60.00058 * 4 3 2 35 35 H 1.09000 * 109.46453 * 299.99566 * 4 3 2 36 36 H 1.07995 * 126.28451 * 359.95602 * 6 5 4 37 37 H 0.97005 * 119.99820 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47252 * 60.00581 * 11 10 8 39 39 H 1.09000 * 109.47482 * 300.00097 * 11 10 8 40 40 H 1.08999 * 109.56446 * 65.66932 * 14 12 11 41 41 H 1.09008 * 109.38625 * 305.63765 * 14 12 11 42 42 H 1.08998 * 109.46173 * 301.21703 * 15 14 12 43 43 H 1.09008 * 109.45046 * 181.25459 * 15 14 12 44 44 H 1.09004 * 109.49909 * 178.68146 * 16 15 14 45 45 H 1.08997 * 109.50362 * 58.58283 * 16 15 14 46 46 H 1.09002 * 109.58729 * 294.84869 * 17 16 15 47 47 H 1.08999 * 109.70474 * 174.49275 * 17 16 15 48 48 H 0.97003 * 119.99506 * 180.02562 * 22 21 19 49 49 H 1.07997 * 125.98895 * 180.24150 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0260 2.9840 0.8875 7 6 5.3275 4.2838 0.5339 8 6 6.2641 5.1851 1.2298 9 8 6.8539 4.8011 2.2214 10 7 6.4665 6.4345 0.7668 11 6 7.3975 7.3299 1.4578 12 6 7.4420 8.6770 0.7337 13 1 7.7779 8.5314 -0.2930 14 6 8.4085 9.6133 1.4566 15 6 8.3446 11.0020 0.8169 16 6 6.9285 11.5652 0.9567 17 6 5.9442 10.6491 0.2228 18 7 6.1022 9.2802 0.7326 19 6 5.0223 8.5818 1.2030 20 1 5.1508 7.8568 1.9931 21 6 3.7627 8.8059 0.6645 22 7 2.6893 8.4048 1.3121 23 14 3.5910 9.6766 -0.9791 24 1 3.5116 11.1427 -0.7568 25 1 4.7697 9.3680 -1.8283 26 1 2.3556 9.2114 -1.6592 27 6 4.5753 4.5867 -0.6230 28 7 3.8687 3.5346 -0.9320 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8908 35 1 3.8573 0.6437 0.8892 36 1 5.4329 2.4387 1.7262 37 1 5.9957 6.7409 -0.0241 38 1 8.3930 6.8862 1.4618 39 1 7.0626 7.4805 2.4841 40 1 9.4230 9.2226 1.3775 41 1 8.1266 9.6833 2.5073 42 1 8.6032 10.9276 -0.2393 43 1 9.0501 11.6652 1.3176 44 1 6.8895 12.5639 0.5217 45 1 6.6599 11.6168 2.0118 46 1 6.1555 10.6675 -0.8464 47 1 4.9238 10.9892 0.3995 48 1 1.8091 8.5610 0.9356 49 1 4.5837 5.5249 -1.1578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024781532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:44 Heat of formation + Delta-G solvation = 22.629261 kcal Electronic energy + Delta-G solvation = -29851.991943 eV Core-core repulsion = 25816.926671 eV Total energy + Delta-G solvation = -4035.065272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.13701 -38.93321 -38.20745 -37.70814 -34.18204 -33.86837 -33.02350 -30.99554 -30.69286 -30.20744 -29.13461 -26.66947 -26.01039 -24.68163 -23.51577 -22.66346 -22.23096 -20.79009 -20.41527 -19.65181 -19.17066 -17.75196 -16.80740 -16.52530 -16.30153 -15.67163 -15.61935 -15.26809 -15.11989 -14.86484 -14.67994 -14.08955 -13.77713 -13.69505 -13.67534 -13.42752 -13.21421 -13.11105 -12.58151 -12.43780 -12.24386 -12.09772 -11.93800 -11.82603 -11.61655 -11.60587 -11.26919 -10.81437 -10.79054 -10.62025 -10.41701 -10.17458 -10.00669 -9.93119 -9.57483 -9.46034 -9.40724 -9.19704 -8.67944 -8.49692 -8.06045 -6.92326 -5.95093 -3.36723 1.77625 2.28006 2.54658 3.28217 3.43571 3.46344 3.53568 3.94642 4.14333 4.45771 4.49161 4.66574 4.82908 4.94293 4.95966 5.04252 5.08173 5.10368 5.25652 5.35387 5.37081 5.39221 5.42806 5.44239 5.52548 5.58319 5.72886 5.78235 5.87492 6.00779 6.04869 6.14384 6.23114 6.30071 6.40726 6.46466 6.49092 6.58890 6.65983 6.71080 6.74147 6.78537 6.96210 7.00935 7.27308 7.73827 7.96188 8.35740 8.40342 8.92518 9.02563 9.69529 10.07955 11.19338 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.003118 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.907132 B = 8978.426422 C =10267.264605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.049 3.951 4 C 0.139 3.861 5 N -0.368 5.368 6 C 0.121 3.879 7 C -0.272 4.272 8 C 0.592 3.408 9 O -0.574 6.574 10 N -0.689 5.689 11 C 0.138 3.862 12 C 0.163 3.837 13 H 0.036 0.964 14 C -0.129 4.129 15 C -0.108 4.108 16 C -0.136 4.136 17 C 0.125 3.875 18 N -0.604 5.604 19 C -0.262 4.262 20 H 0.095 0.905 21 C 0.030 3.970 22 N -0.902 5.902 23 Si 0.877 3.123 24 H -0.289 1.289 25 H -0.271 1.271 26 H -0.305 1.305 27 C 0.098 3.902 28 N -0.303 5.303 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.186 0.814 37 H 0.409 0.591 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.072 0.928 48 H 0.261 0.739 49 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -9.673 -3.894 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.017 3.983 5 N -0.149 5.149 6 C -0.029 4.029 7 C -0.287 4.287 8 C 0.379 3.621 9 O -0.456 6.456 10 N -0.339 5.339 11 C 0.014 3.986 12 C 0.057 3.943 13 H 0.054 0.946 14 C -0.168 4.168 15 C -0.146 4.146 16 C -0.175 4.175 17 C -0.001 4.001 18 N -0.329 5.329 19 C -0.390 4.390 20 H 0.112 0.888 21 C -0.170 4.170 22 N -0.545 5.545 23 Si 0.708 3.292 24 H -0.216 1.216 25 H -0.196 1.196 26 H -0.234 1.234 27 C -0.090 4.090 28 N -0.123 5.123 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.203 0.797 37 H 0.246 0.754 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.822 -10.776 -4.022 11.843 hybrid contribution -0.326 1.498 -0.676 1.676 sum 2.496 -9.278 -4.698 10.695 Atomic orbital electron populations 1.22768 0.80054 1.02881 1.00537 1.87749 1.20520 1.27170 1.95657 1.22691 0.92603 0.85099 1.02441 1.21379 0.92625 0.79047 1.05217 1.48235 1.33196 1.11949 1.21558 1.22879 0.91244 0.94585 0.94200 1.20337 1.09740 0.95820 1.02769 1.17109 0.80493 0.81359 0.83155 1.90694 1.51407 1.76602 1.26871 1.45669 1.44727 1.11671 1.31798 1.21233 0.91601 0.88502 0.97288 1.20665 0.86647 0.90681 0.96350 0.94604 1.21864 0.98505 0.95769 1.00711 1.21366 0.96842 0.96311 1.00064 1.22004 0.95796 0.98043 1.01663 1.21387 0.98410 0.85188 0.95070 1.44416 1.03618 1.10281 1.74614 1.19019 0.84791 1.20257 1.14952 0.88778 1.25319 0.95560 0.98333 0.97744 1.69811 0.97525 1.49234 1.37910 0.87081 0.76513 0.78980 0.86648 1.21640 1.19587 1.23355 1.24130 0.92651 0.97269 0.94992 1.77130 1.24370 0.97105 1.13664 0.93721 0.89327 0.93717 0.92313 0.91392 0.88722 0.87591 0.79730 0.75413 0.92448 0.91269 0.92513 0.91621 0.92770 0.93107 0.93135 0.91819 0.95895 0.90984 0.92854 0.79314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.14 10.70 -35.23 -0.38 -4.51 16 3 C 0.05 0.54 6.12 37.16 0.23 0.77 16 4 C 0.14 1.43 6.86 -4.04 -0.03 1.40 16 5 N -0.37 -5.14 3.65 -60.81 -0.22 -5.36 16 6 C 0.12 1.79 11.25 -16.56 -0.19 1.60 16 7 C -0.27 -4.79 6.13 -105.07 -0.64 -5.44 16 8 C 0.59 11.73 7.81 -12.52 -0.10 11.63 16 9 O -0.57 -12.66 16.90 5.28 0.09 -12.57 16 10 N -0.69 -13.23 3.83 -61.39 -0.24 -13.47 16 11 C 0.14 2.54 4.42 -4.04 -0.02 2.52 16 12 C 0.16 2.93 2.99 -67.82 -0.20 2.72 16 13 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 14 C -0.13 -1.99 5.34 -26.84 -0.14 -2.13 16 15 C -0.11 -1.59 5.88 -26.69 -0.16 -1.75 16 16 C -0.14 -2.29 6.08 -26.61 -0.16 -2.45 16 17 C 0.12 2.54 4.20 -3.71 -0.02 2.53 16 18 N -0.60 -12.94 2.72 -165.03 -0.45 -13.39 16 19 C -0.26 -6.57 7.44 -15.06 -0.11 -6.68 16 20 H 0.09 2.62 6.04 -52.49 -0.32 2.31 16 21 C 0.03 0.80 5.27 -17.43 -0.09 0.71 16 22 N -0.90 -26.20 13.97 55.49 0.78 -25.43 16 23 Si 0.88 20.89 24.32 -169.99 -4.13 16.76 16 24 H -0.29 -6.83 6.51 56.52 0.37 -6.46 16 25 H -0.27 -6.20 6.74 56.52 0.38 -5.82 16 26 H -0.31 -7.56 7.11 56.52 0.40 -7.16 16 27 C 0.10 1.67 11.50 -16.98 -0.20 1.47 16 28 N -0.30 -4.99 12.33 30.86 0.38 -4.61 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.11 0.83 8.06 -51.93 -0.42 0.42 16 36 H 0.19 2.24 8.06 -52.49 -0.42 1.81 16 37 H 0.41 7.90 6.35 -40.82 -0.26 7.64 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.44 7.42 -51.93 -0.39 1.06 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.02 0.47 7.05 -51.93 -0.37 0.10 16 47 H 0.07 1.64 4.64 -51.93 -0.24 1.40 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.19 3.06 7.50 -52.49 -0.39 2.66 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -32.13 388.51 -6.94 -39.07 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -7.91 Total: 9.36 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.71 Total: 8.29 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.25 Total: -62.26 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.29 Total: -17.08 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.13 Total: 16.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.13 -6.94 -39.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024781532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.700 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds