Wall clock time and date at job start Tue Mar 31 2020 19:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99665 * 2 1 4 4 C 1.53009 * 109.46915 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46808 * 179.97438 * 4 3 2 6 6 C 1.34274 * 125.75457 * 125.30703 * 5 4 3 7 7 C 1.38040 * 107.41472 * 180.10662 * 6 5 4 8 8 C 1.47434 * 126.41000 * 179.86837 * 7 6 5 9 9 O 1.21602 * 119.99602 * 359.71902 * 8 7 6 10 10 N 1.34770 * 120.00096 * 179.71179 * 8 7 6 11 11 C 1.46492 * 120.00257 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47542 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.70186 * 299.90840 * 12 11 10 14 14 C 1.52753 * 109.51530 * 179.78500 * 12 11 10 15 15 C 1.53035 * 109.38530 * 185.70574 * 14 12 11 16 16 C 1.53038 * 109.53721 * 61.24349 * 15 14 12 17 17 C 1.53190 * 109.31045 * 298.63055 * 16 15 14 18 18 N 1.46928 * 108.77407 * 54.64010 * 17 16 15 19 19 C 1.36936 * 120.63269 * 126.37107 * 18 17 16 20 20 H 1.07997 * 119.99404 * 211.20806 * 19 18 17 21 21 C 1.38815 * 119.99981 * 31.20182 * 19 18 17 22 22 N 1.31621 * 119.99531 * 196.91557 * 21 19 18 23 23 Si 1.86793 * 120.00186 * 16.91493 * 21 19 18 24 24 H 1.48494 * 109.47340 * 271.18368 * 23 21 19 25 25 H 1.48507 * 109.46971 * 31.17747 * 23 21 19 26 26 H 1.48499 * 109.47320 * 151.17854 * 23 21 19 27 27 C 1.41283 * 107.17467 * 359.60989 * 7 6 5 28 28 N 1.30448 * 108.02549 * 0.23819 * 27 7 6 29 29 H 1.08997 * 109.47212 * 60.00179 * 1 2 3 30 30 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46936 * 299.99444 * 1 2 3 32 32 H 1.08993 * 109.47695 * 60.00455 * 3 2 1 33 33 H 1.09000 * 109.47205 * 299.99596 * 3 2 1 34 34 H 1.08992 * 109.47088 * 60.00058 * 4 3 2 35 35 H 1.09000 * 109.46453 * 299.99566 * 4 3 2 36 36 H 1.07995 * 126.28451 * 359.95602 * 6 5 4 37 37 H 0.97005 * 119.99820 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47252 * 60.00581 * 11 10 8 39 39 H 1.09000 * 109.47482 * 300.00097 * 11 10 8 40 40 H 1.08999 * 109.56446 * 65.66932 * 14 12 11 41 41 H 1.09008 * 109.38625 * 305.63765 * 14 12 11 42 42 H 1.08998 * 109.46173 * 301.21703 * 15 14 12 43 43 H 1.09008 * 109.45046 * 181.25459 * 15 14 12 44 44 H 1.09004 * 109.49909 * 178.68146 * 16 15 14 45 45 H 1.08997 * 109.50362 * 58.58283 * 16 15 14 46 46 H 1.09002 * 109.58729 * 294.84869 * 17 16 15 47 47 H 1.08999 * 109.70474 * 174.49275 * 17 16 15 48 48 H 0.97003 * 119.99506 * 180.02562 * 22 21 19 49 49 H 1.07997 * 125.98895 * 180.24150 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0260 2.9840 0.8875 7 6 5.3275 4.2838 0.5339 8 6 6.2641 5.1851 1.2298 9 8 6.8539 4.8011 2.2214 10 7 6.4665 6.4345 0.7668 11 6 7.3975 7.3299 1.4578 12 6 7.4420 8.6770 0.7337 13 1 7.7779 8.5314 -0.2930 14 6 8.4085 9.6133 1.4566 15 6 8.3446 11.0020 0.8169 16 6 6.9285 11.5652 0.9567 17 6 5.9442 10.6491 0.2228 18 7 6.1022 9.2802 0.7326 19 6 5.0223 8.5818 1.2030 20 1 5.1508 7.8568 1.9931 21 6 3.7627 8.8059 0.6645 22 7 2.6893 8.4048 1.3121 23 14 3.5910 9.6766 -0.9791 24 1 3.5116 11.1427 -0.7568 25 1 4.7697 9.3680 -1.8283 26 1 2.3556 9.2114 -1.6592 27 6 4.5753 4.5867 -0.6230 28 7 3.8687 3.5346 -0.9320 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8908 35 1 3.8573 0.6437 0.8892 36 1 5.4329 2.4387 1.7262 37 1 5.9957 6.7409 -0.0241 38 1 8.3930 6.8862 1.4618 39 1 7.0626 7.4805 2.4841 40 1 9.4230 9.2226 1.3775 41 1 8.1266 9.6833 2.5073 42 1 8.6032 10.9276 -0.2393 43 1 9.0501 11.6652 1.3176 44 1 6.8895 12.5639 0.5217 45 1 6.6599 11.6168 2.0118 46 1 6.1555 10.6675 -0.8464 47 1 4.9238 10.9892 0.3995 48 1 1.8091 8.5610 0.9356 49 1 4.5837 5.5249 -1.1578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024781532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:43 Heat of formation + Delta-G solvation = 0.091069 kcal Electronic energy + Delta-G solvation = -29852.969273 eV Core-core repulsion = 25816.926671 eV Total energy + Delta-G solvation = -4036.042601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.37876 -40.45360 -39.29743 -38.96637 -35.68959 -34.93121 -34.81914 -32.58368 -32.34555 -31.42093 -30.24110 -27.79701 -27.21971 -26.27143 -24.51321 -24.26924 -23.61142 -22.19065 -21.61644 -21.13257 -20.61885 -19.08145 -18.29135 -17.64755 -17.36917 -17.24855 -16.75614 -16.68938 -16.47278 -16.28533 -15.78448 -15.36763 -15.25041 -15.15510 -14.97309 -14.75841 -14.65903 -14.32250 -14.19802 -13.81154 -13.66389 -13.50927 -13.16951 -13.05790 -12.87027 -12.72733 -12.49096 -12.38030 -12.25473 -11.99633 -11.90949 -11.65034 -11.52274 -11.18819 -11.16545 -10.82184 -10.74871 -10.60346 -10.57553 -9.94126 -9.52752 -8.73402 -8.02373 -5.38966 0.54552 1.15332 1.24533 1.36545 1.46628 1.54998 2.46451 2.51184 2.68379 2.70222 3.15297 3.37387 3.52213 3.80548 3.86302 3.87189 3.97493 4.11656 4.18497 4.18723 4.23085 4.31796 4.37124 4.43917 4.47424 4.48071 4.58314 4.61361 4.64440 4.68134 4.72154 4.79443 4.88335 4.91517 5.00236 5.10649 5.20203 5.29034 5.34440 5.36621 5.37314 5.65353 5.75060 5.80953 5.98977 6.01083 6.32403 6.47488 6.83980 7.02373 7.47321 7.73668 8.14450 9.16047 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.003118 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.907132 B = 8978.426422 C =10267.264605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.133 3.867 5 N -0.357 5.357 6 C 0.138 3.862 7 C -0.306 4.306 8 C 0.588 3.412 9 O -0.603 6.603 10 N -0.691 5.691 11 C 0.141 3.859 12 C 0.162 3.838 13 H 0.054 0.946 14 C -0.125 4.125 15 C -0.103 4.103 16 C -0.131 4.131 17 C 0.118 3.882 18 N -0.616 5.616 19 C -0.226 4.226 20 H 0.059 0.941 21 C -0.023 4.023 22 N -0.955 5.955 23 Si 0.934 3.066 24 H -0.286 1.286 25 H -0.251 1.251 26 H -0.322 1.322 27 C 0.089 3.911 28 N -0.319 5.319 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.215 0.785 37 H 0.407 0.593 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.034 0.966 47 H 0.044 0.956 48 H 0.255 0.745 49 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -9.896 -5.019 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.023 4.023 4 C 0.013 3.987 5 N -0.137 5.137 6 C -0.014 4.014 7 C -0.320 4.320 8 C 0.377 3.623 9 O -0.487 6.487 10 N -0.339 5.339 11 C 0.017 3.983 12 C 0.056 3.944 13 H 0.072 0.928 14 C -0.164 4.164 15 C -0.141 4.141 16 C -0.170 4.170 17 C -0.007 4.007 18 N -0.342 5.342 19 C -0.356 4.356 20 H 0.077 0.923 21 C -0.217 4.217 22 N -0.602 5.602 23 Si 0.765 3.235 24 H -0.213 1.213 25 H -0.175 1.175 26 H -0.252 1.252 27 C -0.099 4.099 28 N -0.139 5.139 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.231 0.769 37 H 0.244 0.756 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.929 -10.981 -5.184 13.105 hybrid contribution -0.958 1.467 -0.251 1.770 sum 3.970 -9.514 -5.435 11.654 Atomic orbital electron populations 1.22979 0.78825 1.04409 1.00750 1.87732 1.21881 1.26551 1.95650 1.22541 0.93155 0.85317 1.01259 1.21750 0.92034 0.77311 1.07592 1.48505 1.32369 1.12515 1.20360 1.23285 0.90204 0.93701 0.94200 1.20321 1.10917 0.97011 1.03798 1.17437 0.80398 0.81647 0.82819 1.90656 1.52753 1.77193 1.28102 1.45699 1.44791 1.11769 1.31623 1.21254 0.92269 0.89217 0.95595 1.20889 0.85329 0.90630 0.97515 0.92801 1.21835 0.99221 0.95937 0.99394 1.21366 0.95654 0.95834 1.01197 1.21935 0.96297 0.98556 1.00233 1.21442 0.98109 0.85050 0.96072 1.44540 1.04029 1.11020 1.74579 1.18758 0.85764 1.18335 1.12731 0.92318 1.25786 0.95310 1.00104 1.00549 1.69958 0.97849 1.52692 1.39675 0.86139 0.76195 0.77944 0.83226 1.21347 1.17530 1.25168 1.24152 0.92911 0.97652 0.95145 1.77076 1.24504 0.97571 1.14740 0.93531 0.87186 0.93533 0.93314 0.92861 0.87140 0.84449 0.76860 0.75618 0.90297 0.94479 0.89321 0.93159 0.91371 0.90382 0.90727 0.93396 0.94790 0.93795 0.93610 0.79446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.85 10.70 -148.98 -1.59 -9.45 16 3 C 0.05 1.16 6.12 71.99 0.44 1.60 16 4 C 0.13 2.46 6.86 86.38 0.59 3.06 16 5 N -0.36 -9.57 3.65 -346.30 -1.26 -10.84 16 6 C 0.14 3.95 11.25 84.27 0.95 4.90 16 7 C -0.31 -10.90 6.13 -20.15 -0.12 -11.03 16 8 C 0.59 23.83 7.81 86.67 0.68 24.51 16 9 O -0.60 -27.01 16.90 -4.04 -0.07 -27.08 16 10 N -0.69 -26.99 3.83 -466.39 -1.79 -28.78 16 11 C 0.14 5.17 4.42 86.38 0.38 5.55 16 12 C 0.16 5.52 2.99 44.83 0.13 5.65 16 13 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 14 C -0.12 -3.47 5.34 30.52 0.16 -3.31 16 15 C -0.10 -2.60 5.88 30.62 0.18 -2.42 16 16 C -0.13 -4.07 6.08 30.67 0.19 -3.89 16 17 C 0.12 4.61 4.20 86.36 0.36 4.97 16 18 N -0.62 -25.99 2.72 -676.02 -1.84 -27.83 16 19 C -0.23 -11.63 7.44 84.03 0.63 -11.01 16 20 H 0.06 3.44 6.04 -2.91 -0.02 3.42 16 21 C -0.02 -1.24 5.27 84.86 0.45 -0.79 16 22 N -0.96 -58.03 13.97 21.65 0.30 -57.72 16 23 Si 0.93 44.01 24.32 68.60 1.67 45.68 16 24 H -0.29 -13.20 6.51 99.48 0.65 -12.56 16 25 H -0.25 -10.87 6.74 99.48 0.67 -10.20 16 26 H -0.32 -15.94 7.11 99.48 0.71 -15.24 16 27 C 0.09 3.11 11.50 85.65 0.99 4.09 16 28 N -0.32 -10.51 12.33 -56.28 -0.69 -11.20 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.14 1.73 8.06 -2.39 -0.02 1.71 16 36 H 0.21 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.41 16.03 6.35 -92.70 -0.59 15.44 16 38 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.04 1.60 7.42 -2.39 -0.02 1.58 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.03 1.27 7.05 -2.39 -0.02 1.25 16 47 H 0.04 1.97 4.64 -2.39 -0.01 1.95 16 48 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.19 6.34 7.50 -2.91 -0.02 6.32 16 Total: -1.00 -72.28 388.51 2.24 -70.04 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.27 Total: 33.65 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 7.25 Total: 23.53 kcal Atomic # 7 Polarization: -131.09 SS G_CDS: -5.28 Total: -136.37 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -1.66 Total: -36.52 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.67 Total: 45.68 kcal Total: -72.28 2.24 -70.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024781532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.134 kcal (2) G-P(sol) polarization free energy of solvation -72.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds