Wall clock time and date at job start Tue Mar 31 2020 19:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99605 * 2 1 4 4 C 1.53008 * 109.46938 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46660 * 179.97438 * 4 3 2 6 6 C 1.34269 * 125.74913 * 125.27194 * 5 4 3 7 7 C 1.38039 * 107.41247 * 180.18095 * 6 5 4 8 8 C 1.47431 * 126.41148 * 179.87451 * 7 6 5 9 9 O 1.21599 * 120.00199 * 359.70539 * 8 7 6 10 10 N 1.34777 * 119.99881 * 179.70937 * 8 7 6 11 11 C 1.46498 * 119.99893 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47219 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.70364 * 59.95834 * 12 11 10 14 14 C 1.53621 * 109.66597 * 180.55713 * 12 11 10 15 15 C 1.53039 * 109.24257 * 174.54644 * 14 12 11 16 16 C 1.53041 * 109.53979 * 298.51317 * 15 14 12 17 17 C 1.53185 * 109.31565 * 61.36153 * 16 15 14 18 18 N 1.46929 * 109.58135 * 299.60819 * 12 11 10 19 19 C 1.36931 * 120.63434 * 6.62577 * 18 12 11 20 20 H 1.08000 * 120.00202 * 328.63329 * 19 18 12 21 21 C 1.38816 * 119.99968 * 148.62923 * 19 18 12 22 22 N 1.31613 * 120.00022 * 347.45420 * 21 19 18 23 23 Si 1.86801 * 119.99872 * 167.45368 * 21 19 18 24 24 H 1.48500 * 109.47232 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.47034 * 300.00112 * 23 21 19 26 26 H 1.48499 * 109.47122 * 60.00015 * 23 21 19 27 27 C 1.41286 * 107.17128 * 359.60712 * 7 6 5 28 28 N 1.30445 * 108.02475 * 0.24003 * 27 7 6 29 29 H 1.09005 * 109.46762 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47519 * 299.99863 * 1 2 3 31 31 H 1.08999 * 109.47134 * 60.00628 * 1 2 3 32 32 H 1.08994 * 109.47339 * 59.99737 * 3 2 1 33 33 H 1.09004 * 109.47041 * 299.99433 * 3 2 1 34 34 H 1.08993 * 109.47036 * 59.99621 * 4 3 2 35 35 H 1.09004 * 109.46556 * 299.99442 * 4 3 2 36 36 H 1.07998 * 126.29300 * 0.03197 * 6 5 4 37 37 H 0.96998 * 120.00040 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.46933 * 60.00232 * 11 10 8 39 39 H 1.09005 * 109.47372 * 299.99924 * 11 10 8 40 40 H 1.09000 * 109.63365 * 54.55547 * 14 12 11 41 41 H 1.09002 * 109.46029 * 294.43130 * 14 12 11 42 42 H 1.08999 * 109.45984 * 178.48941 * 15 14 12 43 43 H 1.09006 * 109.44702 * 58.52489 * 15 14 12 44 44 H 1.09005 * 109.49231 * 301.41215 * 16 15 14 45 45 H 1.09001 * 109.52523 * 181.33333 * 16 15 14 46 46 H 1.09000 * 109.59144 * 185.58152 * 17 16 15 47 47 H 1.08998 * 109.70354 * 65.22396 * 17 16 15 48 48 H 0.97006 * 119.99627 * 179.97438 * 22 21 19 49 49 H 1.08009 * 125.98803 * 180.24637 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5232 -0.0013 6 6 5.0254 2.9842 0.8879 7 6 5.3259 4.2846 0.5353 8 6 6.2616 5.1862 1.2317 9 8 6.8516 4.8023 2.2232 10 7 6.4630 6.4361 0.7694 11 6 7.3923 7.3323 1.4618 12 6 7.4360 8.6798 0.7383 13 1 6.4413 9.1254 0.7311 14 6 8.4200 9.6185 1.4528 15 6 8.5592 10.9117 0.6463 16 6 9.1203 10.5918 -0.7411 17 6 8.1497 9.6642 -1.4787 18 7 7.8973 8.4825 -0.6426 19 6 8.0830 7.2214 -1.1428 20 1 8.3910 6.4204 -0.4872 21 6 7.8753 6.9726 -2.4926 22 7 7.2692 7.8693 -3.2415 23 14 8.4562 5.3650 -3.2461 24 1 8.1174 5.3450 -4.6918 25 1 9.9270 5.2439 -3.0811 26 1 7.7864 4.2283 -2.5645 27 6 4.5735 4.5875 -0.6216 28 7 3.8680 3.5349 -0.9313 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.8567 0.6440 -0.8908 35 1 3.8574 0.6438 0.8892 36 1 5.4328 2.4388 1.7263 37 1 5.9920 6.7426 -0.0212 38 1 8.3884 6.8896 1.4665 39 1 7.0564 7.4820 2.4879 40 1 9.3933 9.1347 1.5354 41 1 8.0430 9.8498 2.4490 42 1 9.2362 11.5913 1.1639 43 1 7.5813 11.3820 0.5429 44 1 10.0870 10.0988 -0.6378 45 1 9.2416 11.5155 -1.3069 46 1 8.5896 9.3539 -2.4265 47 1 7.2116 10.1870 -1.6650 48 1 7.1244 7.6954 -4.1848 49 1 4.5812 5.5261 -1.1560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024781533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:49 Heat of formation + Delta-G solvation = 16.232857 kcal Electronic energy + Delta-G solvation = -29769.083226 eV Core-core repulsion = 25733.740585 eV Total energy + Delta-G solvation = -4035.342641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.19902 -38.84660 -38.27655 -37.49495 -34.12302 -33.89403 -33.02575 -30.84472 -30.26698 -29.87458 -29.15335 -26.71807 -25.90910 -24.76985 -23.59189 -22.32675 -22.02892 -20.76857 -20.41061 -19.51672 -19.03594 -17.80710 -16.86135 -16.58991 -16.22498 -15.73045 -15.52814 -15.29016 -15.10023 -14.77835 -14.22529 -14.05760 -13.96118 -13.71861 -13.41270 -13.35943 -13.13168 -12.79208 -12.58656 -12.39138 -12.30902 -11.97130 -11.94481 -11.71488 -11.64784 -11.16595 -10.89968 -10.83456 -10.73168 -10.50695 -10.27210 -10.11584 -10.10562 -9.96504 -9.51527 -9.46805 -9.41751 -9.19718 -8.60204 -8.49661 -8.06181 -6.62511 -5.81041 -3.27928 1.71633 2.20844 2.48744 3.38463 3.43494 3.45923 3.47605 3.93557 4.08636 4.39273 4.47187 4.56815 4.86750 4.88141 4.96131 4.96817 5.03705 5.27411 5.27875 5.31976 5.35410 5.35786 5.51814 5.56064 5.66705 5.67161 5.71036 5.97920 6.02419 6.12853 6.19573 6.37475 6.39408 6.45645 6.60080 6.62820 6.67429 6.74338 6.76336 6.88937 6.89617 7.02407 7.27871 7.41560 7.68415 7.69184 7.82859 8.39459 8.44451 8.99557 9.19926 9.80856 10.38901 11.25401 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.002987 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.064545 B = 9371.517780 C =10337.909586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.051 3.949 4 C 0.137 3.863 5 N -0.369 5.369 6 C 0.120 3.880 7 C -0.276 4.276 8 C 0.587 3.413 9 O -0.575 6.575 10 N -0.689 5.689 11 C 0.137 3.863 12 C 0.160 3.840 13 H 0.032 0.968 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.588 5.588 19 C -0.249 4.249 20 H 0.070 0.930 21 C 0.011 3.989 22 N -0.901 5.901 23 Si 0.890 3.110 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.280 1.280 27 C 0.096 3.904 28 N -0.303 5.303 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.186 0.814 37 H 0.413 0.587 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.018 0.982 48 H 0.254 0.746 49 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -7.138 7.211 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.026 4.026 4 C 0.015 3.985 5 N -0.150 5.150 6 C -0.030 4.030 7 C -0.291 4.291 8 C 0.374 3.626 9 O -0.457 6.457 10 N -0.338 5.338 11 C 0.013 3.987 12 C 0.053 3.947 13 H 0.050 0.950 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.183 4.183 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.379 4.379 20 H 0.088 0.912 21 C -0.188 4.188 22 N -0.545 5.545 23 Si 0.720 3.280 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.207 1.207 27 C -0.092 4.092 28 N -0.122 5.122 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.203 0.797 37 H 0.251 0.749 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.899 -8.216 6.880 14.589 hybrid contribution 0.577 -0.086 -0.455 0.740 sum -9.322 -8.302 6.425 14.039 Atomic orbital electron populations 1.22769 0.80075 1.02982 1.00396 1.87772 1.20487 1.27119 1.95619 1.22671 0.92644 0.85148 1.02164 1.21397 0.92523 0.79119 1.05415 1.48258 1.33352 1.11968 1.21411 1.22894 0.91274 0.94438 0.94402 1.20399 1.09612 0.96172 1.02892 1.17157 0.80771 0.81537 0.83141 1.90693 1.51425 1.76219 1.27384 1.45759 1.44514 1.12321 1.31241 1.21254 0.93641 0.89823 0.93977 1.20830 0.94988 0.92035 0.86888 0.95015 1.22012 1.00506 0.96670 0.97491 1.21363 1.00003 0.96465 0.96674 1.22195 1.00726 0.99431 0.95979 1.20771 0.94447 0.85649 0.94398 1.44081 1.76806 1.02710 1.07609 1.19172 1.39218 0.86946 0.92562 0.91215 1.25027 0.98767 0.97127 0.97894 1.69979 1.43372 1.34772 1.06364 0.86546 0.78979 0.84198 0.78237 1.21730 1.21152 1.20655 1.24270 0.92680 0.97841 0.94441 1.77146 1.25170 0.96863 1.13051 0.89271 0.93843 0.93697 0.92565 0.91373 0.88609 0.87557 0.79711 0.74886 0.91622 0.92713 0.92086 0.93104 0.93806 0.92911 0.92875 0.93623 0.89608 0.96404 0.93589 0.78801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.78 10.70 -35.23 -0.38 -4.16 16 3 C 0.05 0.50 6.11 37.16 0.23 0.72 16 4 C 0.14 1.36 6.86 -4.04 -0.03 1.33 16 5 N -0.37 -5.02 3.65 -60.80 -0.22 -5.25 16 6 C 0.12 1.73 11.25 -16.56 -0.19 1.54 16 7 C -0.28 -4.76 6.13 -105.07 -0.64 -5.40 16 8 C 0.59 11.44 7.81 -12.52 -0.10 11.34 16 9 O -0.58 -12.45 16.90 5.28 0.09 -12.36 16 10 N -0.69 -13.25 3.84 -61.38 -0.24 -13.49 16 11 C 0.14 2.58 4.44 -4.04 -0.02 2.57 16 12 C 0.16 3.04 3.03 -67.37 -0.20 2.84 16 13 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 14 C -0.13 -2.12 5.40 -26.39 -0.14 -2.26 16 15 C -0.11 -1.75 5.88 -26.69 -0.16 -1.90 16 16 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 17 C 0.17 3.85 5.26 -3.71 -0.02 3.83 16 18 N -0.59 -13.22 2.97 -164.52 -0.49 -13.71 16 19 C -0.25 -6.15 6.98 -15.06 -0.11 -6.25 16 20 H 0.07 1.79 5.87 -52.49 -0.31 1.48 16 21 C 0.01 0.28 5.00 -17.43 -0.09 0.20 16 22 N -0.90 -24.05 11.14 55.49 0.62 -23.43 16 23 Si 0.89 21.35 29.57 -169.99 -5.03 16.32 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.10 1.61 11.50 -16.98 -0.20 1.41 16 28 N -0.30 -4.90 12.33 30.86 0.38 -4.52 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.11 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.41 8.17 6.36 -40.82 -0.26 7.91 16 38 H 0.07 1.36 7.41 -51.93 -0.38 0.97 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.09 2.17 6.15 -51.93 -0.32 1.85 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 49 H 0.20 3.15 7.50 -52.48 -0.39 2.76 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -30.42 395.01 -8.00 -38.42 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.98 Total: 7.73 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.71 Total: 8.50 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.05 Total: -60.40 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.29 Total: -16.52 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.42 -8.00 -38.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024781533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.649 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds