Wall clock time and date at job start Tue Mar 31 2020 19:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99605 * 2 1 4 4 C 1.53008 * 109.46938 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46660 * 179.97438 * 4 3 2 6 6 C 1.34269 * 125.74913 * 125.27194 * 5 4 3 7 7 C 1.38039 * 107.41247 * 180.18095 * 6 5 4 8 8 C 1.47431 * 126.41148 * 179.87451 * 7 6 5 9 9 O 1.21599 * 120.00199 * 359.70539 * 8 7 6 10 10 N 1.34777 * 119.99881 * 179.70937 * 8 7 6 11 11 C 1.46498 * 119.99893 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47219 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.70364 * 59.95834 * 12 11 10 14 14 C 1.53621 * 109.66597 * 180.55713 * 12 11 10 15 15 C 1.53039 * 109.24257 * 174.54644 * 14 12 11 16 16 C 1.53041 * 109.53979 * 298.51317 * 15 14 12 17 17 C 1.53185 * 109.31565 * 61.36153 * 16 15 14 18 18 N 1.46929 * 109.58135 * 299.60819 * 12 11 10 19 19 C 1.36931 * 120.63434 * 6.62577 * 18 12 11 20 20 H 1.08000 * 120.00202 * 328.63329 * 19 18 12 21 21 C 1.38816 * 119.99968 * 148.62923 * 19 18 12 22 22 N 1.31613 * 120.00022 * 347.45420 * 21 19 18 23 23 Si 1.86801 * 119.99872 * 167.45368 * 21 19 18 24 24 H 1.48500 * 109.47232 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.47034 * 300.00112 * 23 21 19 26 26 H 1.48499 * 109.47122 * 60.00015 * 23 21 19 27 27 C 1.41286 * 107.17128 * 359.60712 * 7 6 5 28 28 N 1.30445 * 108.02475 * 0.24003 * 27 7 6 29 29 H 1.09005 * 109.46762 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47519 * 299.99863 * 1 2 3 31 31 H 1.08999 * 109.47134 * 60.00628 * 1 2 3 32 32 H 1.08994 * 109.47339 * 59.99737 * 3 2 1 33 33 H 1.09004 * 109.47041 * 299.99433 * 3 2 1 34 34 H 1.08993 * 109.47036 * 59.99621 * 4 3 2 35 35 H 1.09004 * 109.46556 * 299.99442 * 4 3 2 36 36 H 1.07998 * 126.29300 * 0.03197 * 6 5 4 37 37 H 0.96998 * 120.00040 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.46933 * 60.00232 * 11 10 8 39 39 H 1.09005 * 109.47372 * 299.99924 * 11 10 8 40 40 H 1.09000 * 109.63365 * 54.55547 * 14 12 11 41 41 H 1.09002 * 109.46029 * 294.43130 * 14 12 11 42 42 H 1.08999 * 109.45984 * 178.48941 * 15 14 12 43 43 H 1.09006 * 109.44702 * 58.52489 * 15 14 12 44 44 H 1.09005 * 109.49231 * 301.41215 * 16 15 14 45 45 H 1.09001 * 109.52523 * 181.33333 * 16 15 14 46 46 H 1.09000 * 109.59144 * 185.58152 * 17 16 15 47 47 H 1.08998 * 109.70354 * 65.22396 * 17 16 15 48 48 H 0.97006 * 119.99627 * 179.97438 * 22 21 19 49 49 H 1.08009 * 125.98803 * 180.24637 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5232 -0.0013 6 6 5.0254 2.9842 0.8879 7 6 5.3259 4.2846 0.5353 8 6 6.2616 5.1862 1.2317 9 8 6.8516 4.8023 2.2232 10 7 6.4630 6.4361 0.7694 11 6 7.3923 7.3323 1.4618 12 6 7.4360 8.6798 0.7383 13 1 6.4413 9.1254 0.7311 14 6 8.4200 9.6185 1.4528 15 6 8.5592 10.9117 0.6463 16 6 9.1203 10.5918 -0.7411 17 6 8.1497 9.6642 -1.4787 18 7 7.8973 8.4825 -0.6426 19 6 8.0830 7.2214 -1.1428 20 1 8.3910 6.4204 -0.4872 21 6 7.8753 6.9726 -2.4926 22 7 7.2692 7.8693 -3.2415 23 14 8.4562 5.3650 -3.2461 24 1 8.1174 5.3450 -4.6918 25 1 9.9270 5.2439 -3.0811 26 1 7.7864 4.2283 -2.5645 27 6 4.5735 4.5875 -0.6216 28 7 3.8680 3.5349 -0.9313 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.8567 0.6440 -0.8908 35 1 3.8574 0.6438 0.8892 36 1 5.4328 2.4388 1.7263 37 1 5.9920 6.7426 -0.0212 38 1 8.3884 6.8896 1.4665 39 1 7.0564 7.4820 2.4879 40 1 9.3933 9.1347 1.5354 41 1 8.0430 9.8498 2.4490 42 1 9.2362 11.5913 1.1639 43 1 7.5813 11.3820 0.5429 44 1 10.0870 10.0988 -0.6378 45 1 9.2416 11.5155 -1.3069 46 1 8.5896 9.3539 -2.4265 47 1 7.2116 10.1870 -1.6650 48 1 7.1244 7.6954 -4.1848 49 1 4.5812 5.5261 -1.1560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024781533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:48 Heat of formation + Delta-G solvation = -2.894058 kcal Electronic energy + Delta-G solvation = -29769.912631 eV Core-core repulsion = 25733.740585 eV Total energy + Delta-G solvation = -4036.172046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.40639 -40.36344 -39.14166 -38.94081 -35.61982 -34.94031 -34.84118 -32.37891 -31.64952 -31.41328 -30.22514 -27.73513 -27.22543 -26.37283 -24.51978 -23.85015 -23.51845 -22.20239 -21.62910 -20.97379 -20.55773 -19.08631 -18.20293 -17.53811 -17.38673 -17.22660 -16.74247 -16.53963 -16.31900 -16.05481 -15.78614 -15.53703 -15.30705 -14.97893 -14.80860 -14.69831 -14.42815 -14.28120 -14.00758 -13.80412 -13.53136 -13.36002 -13.06569 -12.80885 -12.77703 -12.71392 -12.53018 -12.36804 -12.28465 -12.03491 -11.99233 -11.75143 -11.48932 -11.10037 -11.04729 -10.80595 -10.73693 -10.63053 -10.46826 -9.94830 -9.53654 -8.49822 -7.78547 -5.24848 0.52601 1.14228 1.20252 1.42534 1.46488 1.49970 2.47116 2.53633 2.63459 2.72642 3.37213 3.50791 3.64982 3.79293 3.84757 3.87562 4.07174 4.17342 4.17971 4.26923 4.30543 4.32496 4.44193 4.48297 4.49684 4.58749 4.60748 4.66135 4.71487 4.71792 4.80930 4.89157 4.93626 5.05082 5.19420 5.26867 5.33036 5.35745 5.43619 5.51972 5.69727 5.72982 5.79331 5.81323 5.90134 6.00749 6.45601 6.49585 6.85268 7.25211 7.46255 7.94033 8.47005 9.25287 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.002987 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.064545 B = 9371.517780 C =10337.909586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.058 3.942 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.139 3.861 7 C -0.308 4.308 8 C 0.587 3.413 9 O -0.601 6.601 10 N -0.692 5.692 11 C 0.142 3.858 12 C 0.159 3.841 13 H 0.034 0.966 14 C -0.121 4.121 15 C -0.103 4.103 16 C -0.135 4.135 17 C 0.177 3.823 18 N -0.600 5.600 19 C -0.230 4.230 20 H 0.061 0.939 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 0.932 3.068 24 H -0.297 1.297 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.088 3.912 28 N -0.319 5.319 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.217 0.783 37 H 0.410 0.590 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.002 0.998 48 H 0.247 0.753 49 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.792 -7.624 9.103 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.019 4.019 4 C 0.010 3.990 5 N -0.138 5.138 6 C -0.013 4.013 7 C -0.323 4.323 8 C 0.375 3.625 9 O -0.485 6.485 10 N -0.340 5.340 11 C 0.018 3.982 12 C 0.053 3.947 13 H 0.052 0.948 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.325 5.325 19 C -0.361 4.361 20 H 0.079 0.921 21 C -0.222 4.222 22 N -0.569 5.569 23 Si 0.763 3.237 24 H -0.223 1.223 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.100 4.100 28 N -0.139 5.139 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.157 0.843 36 H 0.233 0.767 37 H 0.246 0.754 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.020 0.980 48 H 0.056 0.944 49 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -10.258 -8.702 8.777 16.062 hybrid contribution 0.615 -0.017 -0.998 1.173 sum -9.643 -8.720 7.779 15.150 Atomic orbital electron populations 1.22977 0.78686 1.04333 1.00910 1.87748 1.22024 1.26798 1.95677 1.22518 0.92456 0.85308 1.01629 1.21762 0.92697 0.77298 1.07274 1.48526 1.32574 1.12489 1.20197 1.23316 0.90072 0.93473 0.94423 1.20350 1.10772 0.97367 1.03820 1.17435 0.80648 0.81563 0.82820 1.90662 1.52646 1.76635 1.28532 1.45797 1.44472 1.12648 1.31104 1.21236 0.92613 0.89440 0.94942 1.20995 0.95733 0.92860 0.85132 0.94825 1.21963 0.99330 0.96034 0.98765 1.21347 1.00834 0.96732 0.95109 1.22051 0.99037 0.98992 0.97368 1.20593 0.94385 0.86143 0.93710 1.44254 1.77181 1.02033 1.08996 1.19150 1.37166 0.87604 0.92174 0.92149 1.25360 0.99847 0.98541 0.98469 1.70077 1.45131 1.35722 1.05972 0.85894 0.78063 0.82456 0.77279 1.22345 1.21703 1.21190 1.24219 0.93071 0.98093 0.94606 1.77098 1.25421 0.97323 1.14107 0.87572 0.92995 0.93545 0.92236 0.92844 0.88177 0.84302 0.76674 0.75359 0.93671 0.90788 0.92812 0.89977 0.90847 0.92421 0.93704 0.91882 0.93114 0.98036 0.94361 0.79391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.04 10.70 -148.98 -1.59 -8.63 16 3 C 0.06 1.04 6.11 71.98 0.44 1.48 16 4 C 0.13 2.27 6.86 86.38 0.59 2.87 16 5 N -0.36 -9.16 3.65 -346.28 -1.26 -10.42 16 6 C 0.14 3.76 11.25 84.27 0.95 4.71 16 7 C -0.31 -10.53 6.13 -20.15 -0.12 -10.65 16 8 C 0.59 22.83 7.81 86.66 0.68 23.50 16 9 O -0.60 -25.70 16.90 -4.03 -0.07 -25.77 16 10 N -0.69 -26.79 3.84 -466.36 -1.79 -28.58 16 11 C 0.14 5.25 4.44 86.38 0.38 5.64 16 12 C 0.16 5.89 3.03 45.12 0.14 6.02 16 13 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 14 C -0.12 -3.73 5.40 30.82 0.17 -3.56 16 15 C -0.10 -3.03 5.88 30.62 0.18 -2.85 16 16 C -0.14 -4.80 6.08 30.67 0.19 -4.61 16 17 C 0.18 7.96 5.26 86.36 0.45 8.42 16 18 N -0.60 -27.10 2.97 -674.42 -2.00 -29.10 16 19 C -0.23 -11.53 6.98 84.04 0.59 -10.95 16 20 H 0.06 3.15 5.87 -2.91 -0.02 3.13 16 21 C -0.03 -1.35 5.00 84.86 0.42 -0.92 16 22 N -0.92 -50.75 11.14 21.65 0.24 -50.51 16 23 Si 0.93 44.91 29.57 68.60 2.03 46.94 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 C 0.09 2.99 11.50 85.65 0.99 3.97 16 28 N -0.32 -10.23 12.33 -56.27 -0.69 -10.93 16 29 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.14 1.57 8.06 -2.39 -0.02 1.55 16 36 H 0.22 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.41 16.55 6.36 -92.71 -0.59 15.96 16 38 H 0.04 1.86 7.41 -2.39 -0.02 1.84 16 39 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 2.63 6.15 -2.39 -0.01 2.62 16 47 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.25 13.54 8.31 -92.70 -0.77 12.77 16 49 H 0.19 6.42 7.50 -2.91 -0.02 6.40 16 Total: -1.00 -66.28 395.01 2.50 -63.79 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.36 Total: 28.57 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 7.29 Total: 24.64 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -5.51 Total: -129.54 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.66 Total: -34.40 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -66.28 2.50 -63.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024781533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.894 kcal (2) G-P(sol) polarization free energy of solvation -66.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds