Wall clock time and date at job start Tue Mar 31 2020 20:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46716 * 2 1 4 4 C 1.53001 * 109.47127 * 240.00440 * 2 1 3 5 5 N 1.46492 * 109.47392 * 120.00328 * 2 1 3 6 6 N 1.28723 * 125.32159 * 240.04293 * 5 2 1 7 7 N 1.28977 * 108.99298 * 179.97438 * 6 5 2 8 8 C 1.34194 * 107.25002 * 359.97438 * 7 6 5 9 9 C 1.48007 * 126.69577 * 180.02562 * 8 7 6 10 10 O 1.21537 * 119.99319 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00380 * 359.97438 * 9 8 7 12 12 C 1.46493 * 119.99827 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47581 * 274.99822 * 12 11 9 14 14 C 1.53006 * 109.47364 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46820 * 60.00297 * 14 13 12 16 16 N 1.46501 * 109.46998 * 180.02562 * 15 14 13 17 17 C 1.36933 * 119.99657 * 274.99997 * 16 15 14 18 18 H 1.07999 * 120.00604 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99715 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99910 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47225 * 90.00010 * 21 19 17 23 23 H 1.48504 * 109.47416 * 209.99950 * 21 19 17 24 24 H 1.48499 * 109.47293 * 330.00156 * 21 19 17 25 25 C 1.53007 * 109.47101 * 300.00198 * 15 14 13 26 26 C 1.52992 * 109.47064 * 60.00142 * 25 15 14 27 27 N 1.28871 * 125.32377 * 60.00284 * 5 2 1 28 28 H 1.09007 * 109.47055 * 299.99359 * 1 2 3 29 29 H 1.08993 * 109.47614 * 59.99954 * 1 2 3 30 30 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46611 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47119 * 299.99793 * 3 2 1 33 33 H 1.08999 * 109.46987 * 60.00790 * 3 2 1 34 34 H 1.09002 * 109.46989 * 299.99841 * 4 2 1 35 35 H 1.09003 * 109.47207 * 59.99338 * 4 2 1 36 36 H 1.08998 * 109.47332 * 179.97438 * 4 2 1 37 37 H 0.97005 * 119.99293 * 0.02562 * 11 9 8 38 38 H 1.08995 * 109.47160 * 35.00802 * 12 11 9 39 39 H 1.09003 * 109.47375 * 300.00711 * 13 12 11 40 40 H 1.09003 * 109.46794 * 60.00584 * 13 12 11 41 41 H 1.08997 * 109.46689 * 300.00663 * 14 13 12 42 42 H 1.08998 * 109.47102 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.46905 * 60.00029 * 15 14 13 44 44 H 0.97000 * 119.99807 * 95.00049 * 16 15 14 45 45 H 0.97002 * 119.99876 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46679 * 299.99850 * 25 15 14 47 47 H 1.08998 * 109.46927 * 180.02562 * 25 15 14 48 48 H 1.09000 * 109.47122 * 180.02562 * 26 25 15 49 49 H 1.08997 * 109.47611 * 60.00279 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1960 6 7 2.7609 -0.1660 2.1073 7 7 3.0024 -1.0517 3.0133 8 6 2.3771 -2.1800 2.6435 9 6 2.3690 -3.4669 3.3745 10 8 1.7579 -4.4168 2.9256 11 7 3.0391 -3.5855 4.5378 12 6 3.0305 -4.8591 5.2615 13 6 1.7818 -4.9370 6.1422 14 6 1.7732 -6.2670 6.8986 15 6 3.0229 -6.3627 7.7760 16 7 3.0150 -7.6365 8.4998 17 6 2.3355 -7.7471 9.6835 18 1 1.8051 -6.8955 10.0833 19 6 2.3284 -8.9538 10.3695 20 7 2.9744 -9.9917 9.8820 21 14 1.4021 -9.1046 11.9846 22 1 0.0059 -9.5336 11.7163 23 1 2.0719 -10.1106 12.8475 24 1 1.3919 -7.7894 12.6741 25 6 4.2717 -6.2849 6.8953 26 6 4.2802 -4.9549 6.1391 27 7 1.7711 -1.9181 1.5008 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2493 35 1 1.6765 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 3.5265 -2.8272 4.8962 38 1 3.0235 -5.6827 4.5476 39 1 1.7888 -4.1134 6.8562 40 1 0.8915 -4.8683 5.5171 41 1 1.7664 -7.0907 6.1848 42 1 0.8834 -6.3226 7.5257 43 1 3.0297 -5.5389 8.4898 44 1 3.4911 -8.4014 8.1405 45 1 2.9698 -10.8349 10.3616 46 1 4.2648 -7.1087 6.1817 47 1 5.1620 -6.3535 7.5204 48 1 5.1696 -4.8997 5.5113 49 1 4.2871 -4.1311 6.8528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026496926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:45 Heat of formation + Delta-G solvation = 87.071942 kcal Electronic energy + Delta-G solvation = -28820.054758 eV Core-core repulsion = 24820.076681 eV Total energy + Delta-G solvation = -3999.978077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.75967 -40.04069 -38.24300 -37.85315 -34.97052 -33.87096 -33.23341 -32.60196 -30.62202 -30.38377 -28.33279 -28.22800 -27.62093 -25.42032 -24.82637 -23.47600 -22.35825 -21.44452 -21.17291 -20.57581 -19.55534 -18.22763 -17.73872 -17.20622 -16.90231 -16.28793 -15.30307 -15.17855 -14.90366 -14.64661 -14.58988 -14.29073 -13.93547 -13.73159 -13.58807 -13.52696 -13.18612 -13.04682 -13.00821 -12.57735 -12.55503 -12.52168 -12.19581 -12.02523 -11.82550 -11.78476 -11.44979 -11.39226 -11.33715 -11.05836 -10.80556 -10.76503 -10.67967 -10.67688 -10.35536 -10.14477 -10.08374 -9.74474 -9.57042 -9.05853 -8.81952 -6.90327 -5.72024 -3.00263 0.71209 1.18555 1.28379 2.61968 2.93048 3.46661 3.51768 3.52510 3.53280 3.75901 3.83384 3.94660 4.26300 4.62863 4.73320 4.76310 4.76887 4.86455 4.92882 4.96625 4.97892 4.98202 5.05267 5.22263 5.29370 5.34556 5.41576 5.52217 5.54904 5.62341 5.69165 5.74555 5.75328 5.84761 5.90167 6.04289 6.20831 6.27229 6.32565 6.48888 6.58535 6.65063 6.75328 7.02252 7.18863 7.24871 7.74754 7.82254 7.96747 8.46920 9.57881 10.16746 10.51253 11.50741 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033357 B = 0.001824 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.197104 B =15348.045379 C =15503.979585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.153 4.153 4 C -0.161 4.161 5 N -0.125 5.125 6 N -0.056 5.056 7 N -0.257 5.257 8 C 0.128 3.872 9 C 0.615 3.385 10 O -0.506 6.506 11 N -0.700 5.700 12 C 0.146 3.854 13 C -0.126 4.126 14 C -0.132 4.132 15 C 0.176 3.824 16 N -0.725 5.725 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.120 4.120 26 C -0.119 4.119 27 N -0.245 5.245 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.408 0.592 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 25.020 -23.965 34.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 C -0.211 4.211 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.048 5.048 7 N -0.132 5.132 8 C -0.156 4.156 9 C 0.394 3.606 10 O -0.377 6.377 11 N -0.351 5.351 12 C 0.044 3.956 13 C -0.165 4.165 14 C -0.173 4.173 15 C 0.066 3.934 16 N -0.365 5.365 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.159 4.159 26 C -0.158 4.158 27 N -0.098 5.098 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.244 0.756 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.870 24.916 -24.242 34.774 hybrid contribution -0.344 -0.437 0.999 1.144 sum -1.215 24.479 -23.243 33.778 Atomic orbital electron populations 1.22271 0.90487 1.04913 1.04276 1.21546 0.96462 0.93105 0.79324 1.22115 1.03243 0.91249 1.04524 1.22268 1.02523 1.02206 0.94916 1.50767 1.29750 1.05371 1.18102 1.78871 1.08460 1.21960 0.95536 1.76133 1.19564 0.98134 1.19376 1.25421 0.99552 0.97289 0.93387 1.16124 0.80367 0.83234 0.80903 1.90875 1.42267 1.37327 1.67230 1.45901 1.51525 1.16227 1.21489 1.21276 0.96470 0.84288 0.93609 1.21930 0.96693 0.99698 0.98171 1.22228 1.01567 0.94648 0.98819 1.20258 0.91036 0.90372 0.91719 1.42426 1.61856 1.08452 1.23811 1.19246 1.24128 0.96057 0.97294 0.91216 1.24736 1.01097 0.96088 0.99185 1.69661 1.46903 1.01671 1.39960 0.86214 0.79325 0.77181 0.83624 1.21808 1.21844 1.20815 1.21753 0.99957 0.95466 0.98710 1.21764 0.96008 0.99710 0.98292 1.75000 1.20730 0.98886 1.15178 0.91227 0.88869 0.90141 0.90465 0.89003 0.90453 0.90146 0.88873 0.91251 0.75631 0.88932 0.91996 0.92226 0.92385 0.91687 0.93496 0.78295 0.93588 0.91882 0.91204 0.91613 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 8.66 37.16 0.32 -0.36 16 2 C 0.18 0.94 1.30 -131.82 -0.17 0.77 16 3 C -0.15 -0.51 7.90 37.16 0.29 -0.21 16 4 C -0.16 -0.66 8.66 37.16 0.32 -0.34 16 5 N -0.13 -1.20 3.72 0.52 0.00 -1.20 16 6 N -0.06 -0.61 12.21 60.35 0.74 0.13 16 7 N -0.26 -3.15 12.26 32.10 0.39 -2.76 16 8 C 0.13 1.68 8.14 -156.24 -1.27 0.41 16 9 C 0.61 8.72 7.80 -12.26 -0.10 8.62 16 10 O -0.51 -8.80 16.76 5.33 0.09 -8.71 16 11 N -0.70 -8.48 5.07 -54.70 -0.28 -8.76 16 12 C 0.15 1.97 2.46 -67.93 -0.17 1.80 16 13 C -0.13 -1.88 5.49 -26.73 -0.15 -2.02 16 14 C -0.13 -2.39 5.50 -26.73 -0.15 -2.54 16 15 C 0.18 3.42 2.77 -67.93 -0.19 3.24 16 16 N -0.73 -18.12 5.12 -53.42 -0.27 -18.39 16 17 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 21 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.12 -1.90 5.39 -26.73 -0.14 -2.05 16 26 C -0.12 -1.48 5.39 -26.73 -0.14 -1.63 16 27 N -0.24 -3.02 11.85 32.11 0.38 -2.64 16 28 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.41 4.11 8.35 -40.82 -0.34 3.77 16 38 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 44 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 402.17 15.07 6.06 6.06 Total: -1.00 -34.05 402.17 -7.18 -41.23 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.20 Total: 6.69 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.78 Total: -1.56 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 1.69 Total: -61.30 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.05 -7.18 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026496926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.298 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds