Wall clock time and date at job start Tue Mar 31 2020 20:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46716 * 2 1 4 4 C 1.53001 * 109.47127 * 240.00440 * 2 1 3 5 5 N 1.46492 * 109.47392 * 120.00328 * 2 1 3 6 6 N 1.28723 * 125.32159 * 240.04293 * 5 2 1 7 7 N 1.28977 * 108.99298 * 179.97438 * 6 5 2 8 8 C 1.34194 * 107.25002 * 359.97438 * 7 6 5 9 9 C 1.48007 * 126.69577 * 180.02562 * 8 7 6 10 10 O 1.21537 * 119.99319 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00380 * 359.97438 * 9 8 7 12 12 C 1.46493 * 119.99827 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47581 * 274.99822 * 12 11 9 14 14 C 1.53006 * 109.47364 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46820 * 60.00297 * 14 13 12 16 16 N 1.46501 * 109.46998 * 180.02562 * 15 14 13 17 17 C 1.36933 * 119.99657 * 274.99997 * 16 15 14 18 18 H 1.07999 * 120.00604 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99715 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99910 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47225 * 90.00010 * 21 19 17 23 23 H 1.48504 * 109.47416 * 209.99950 * 21 19 17 24 24 H 1.48499 * 109.47293 * 330.00156 * 21 19 17 25 25 C 1.53007 * 109.47101 * 300.00198 * 15 14 13 26 26 C 1.52992 * 109.47064 * 60.00142 * 25 15 14 27 27 N 1.28871 * 125.32377 * 60.00284 * 5 2 1 28 28 H 1.09007 * 109.47055 * 299.99359 * 1 2 3 29 29 H 1.08993 * 109.47614 * 59.99954 * 1 2 3 30 30 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46611 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47119 * 299.99793 * 3 2 1 33 33 H 1.08999 * 109.46987 * 60.00790 * 3 2 1 34 34 H 1.09002 * 109.46989 * 299.99841 * 4 2 1 35 35 H 1.09003 * 109.47207 * 59.99338 * 4 2 1 36 36 H 1.08998 * 109.47332 * 179.97438 * 4 2 1 37 37 H 0.97005 * 119.99293 * 0.02562 * 11 9 8 38 38 H 1.08995 * 109.47160 * 35.00802 * 12 11 9 39 39 H 1.09003 * 109.47375 * 300.00711 * 13 12 11 40 40 H 1.09003 * 109.46794 * 60.00584 * 13 12 11 41 41 H 1.08997 * 109.46689 * 300.00663 * 14 13 12 42 42 H 1.08998 * 109.47102 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.46905 * 60.00029 * 15 14 13 44 44 H 0.97000 * 119.99807 * 95.00049 * 16 15 14 45 45 H 0.97002 * 119.99876 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46679 * 299.99850 * 25 15 14 47 47 H 1.08998 * 109.46927 * 180.02562 * 25 15 14 48 48 H 1.09000 * 109.47122 * 180.02562 * 26 25 15 49 49 H 1.08997 * 109.47611 * 60.00279 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1960 6 7 2.7609 -0.1660 2.1073 7 7 3.0024 -1.0517 3.0133 8 6 2.3771 -2.1800 2.6435 9 6 2.3690 -3.4669 3.3745 10 8 1.7579 -4.4168 2.9256 11 7 3.0391 -3.5855 4.5378 12 6 3.0305 -4.8591 5.2615 13 6 1.7818 -4.9370 6.1422 14 6 1.7732 -6.2670 6.8986 15 6 3.0229 -6.3627 7.7760 16 7 3.0150 -7.6365 8.4998 17 6 2.3355 -7.7471 9.6835 18 1 1.8051 -6.8955 10.0833 19 6 2.3284 -8.9538 10.3695 20 7 2.9744 -9.9917 9.8820 21 14 1.4021 -9.1046 11.9846 22 1 0.0059 -9.5336 11.7163 23 1 2.0719 -10.1106 12.8475 24 1 1.3919 -7.7894 12.6741 25 6 4.2717 -6.2849 6.8953 26 6 4.2802 -4.9549 6.1391 27 7 1.7711 -1.9181 1.5008 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2493 35 1 1.6765 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 3.5265 -2.8272 4.8962 38 1 3.0235 -5.6827 4.5476 39 1 1.7888 -4.1134 6.8562 40 1 0.8915 -4.8683 5.5171 41 1 1.7664 -7.0907 6.1848 42 1 0.8834 -6.3226 7.5257 43 1 3.0297 -5.5389 8.4898 44 1 3.4911 -8.4014 8.1405 45 1 2.9698 -10.8349 10.3616 46 1 4.2648 -7.1087 6.1817 47 1 5.1620 -6.3535 7.5204 48 1 5.1696 -4.8997 5.5113 49 1 4.2871 -4.1311 6.8528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026496926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:44 Heat of formation + Delta-G solvation = 62.969906 kcal Electronic energy + Delta-G solvation = -28821.099901 eV Core-core repulsion = 24820.076681 eV Total energy + Delta-G solvation = -4001.023219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.61754 -41.19388 -39.34899 -38.60776 -36.47744 -34.90771 -34.59703 -33.61439 -32.37109 -31.68507 -29.26751 -28.55415 -28.54516 -26.54744 -25.63366 -25.28520 -23.65349 -22.69279 -22.05326 -21.56797 -20.96046 -19.36702 -18.84318 -18.56667 -17.76433 -17.44141 -16.89271 -16.26030 -16.05698 -15.49978 -15.36808 -15.27720 -15.17646 -15.11937 -15.01625 -14.63725 -14.08177 -13.99809 -13.50640 -13.46147 -13.29288 -13.23372 -13.17906 -13.07686 -12.85287 -12.82405 -12.64848 -12.47023 -12.38311 -12.32807 -12.13944 -12.12108 -12.11542 -12.01498 -11.73542 -11.52835 -11.48606 -11.40426 -11.19897 -10.82961 -10.21537 -8.96723 -7.91349 -5.19001 -0.17950 0.23618 0.62191 1.47841 1.49438 1.57585 1.63684 1.85576 2.58118 2.76543 2.93248 3.41465 3.47755 3.55663 3.63192 3.74138 3.83612 3.89668 3.99053 4.28174 4.29423 4.38039 4.39761 4.40886 4.51564 4.51816 4.58966 4.59814 4.61098 4.65754 4.72566 4.72790 4.83784 5.00158 5.01747 5.08361 5.10360 5.14337 5.16744 5.22015 5.27121 5.29320 5.33719 5.52650 5.57510 5.66575 6.21619 6.31551 6.84075 7.02417 7.37118 8.15330 8.37522 9.32278 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033357 B = 0.001824 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.197104 B =15348.045379 C =15503.979585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 C -0.150 4.150 4 C -0.158 4.158 5 N -0.109 5.109 6 N -0.057 5.057 7 N -0.264 5.264 8 C 0.114 3.886 9 C 0.617 3.383 10 O -0.545 6.545 11 N -0.683 5.683 12 C 0.153 3.847 13 C -0.115 4.115 14 C -0.122 4.122 15 C 0.170 3.830 16 N -0.739 5.739 17 C -0.235 4.235 18 H 0.075 0.925 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.970 3.030 22 H -0.291 1.291 23 H -0.296 1.296 24 H -0.268 1.268 25 C -0.112 4.112 26 C -0.107 4.107 27 N -0.260 5.260 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.422 0.578 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.372 0.628 45 H 0.249 0.751 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.091 0.909 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 28.112 -25.117 37.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.081 3.919 3 C -0.207 4.207 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.049 5.049 7 N -0.138 5.138 8 C -0.170 4.170 9 C 0.397 3.603 10 O -0.419 6.419 11 N -0.334 5.334 12 C 0.050 3.950 13 C -0.154 4.154 14 C -0.163 4.163 15 C 0.062 3.938 16 N -0.378 5.378 17 C -0.367 4.367 18 H 0.093 0.907 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.799 3.201 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.193 1.193 25 C -0.151 4.151 26 C -0.145 4.145 27 N -0.114 5.114 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.260 0.740 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.743 28.098 -25.396 37.882 hybrid contribution -0.421 -1.276 1.217 1.812 sum -1.164 26.823 -24.180 36.131 Atomic orbital electron populations 1.22314 0.89484 1.04168 1.05698 1.22212 0.97326 0.94099 0.78256 1.22180 1.02902 0.89748 1.05915 1.22311 1.02161 1.01535 0.95595 1.51314 1.28329 1.04548 1.18415 1.78803 1.08725 1.21667 0.95694 1.76094 1.19828 0.97891 1.19996 1.25173 1.00695 0.97188 0.93936 1.16247 0.79771 0.83181 0.81064 1.90855 1.44000 1.38716 1.68282 1.45685 1.50906 1.16157 1.20699 1.21083 0.96239 0.84496 0.93218 1.21797 0.97336 0.98071 0.98206 1.22021 0.99889 0.96181 0.98172 1.20518 0.93238 0.87928 0.92076 1.42662 1.61427 1.10016 1.23658 1.19628 1.23130 0.96002 0.97897 0.90696 1.25533 1.02798 0.96066 1.02735 1.69818 1.48947 1.01990 1.41413 0.85189 0.77691 0.77405 0.79803 1.21830 1.22279 1.19328 1.21630 0.97824 0.97457 0.98175 1.21673 0.96293 0.98111 0.98408 1.74968 1.21059 1.00252 1.15153 0.91936 0.85297 0.91938 0.91022 0.85530 0.91119 0.91916 0.85319 0.91820 0.74034 0.90441 0.90402 0.93033 0.93859 0.93891 0.93365 0.79664 0.94197 0.92513 0.91225 0.89060 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.66 71.98 0.62 -0.42 16 2 C 0.16 1.41 1.30 3.61 0.00 1.41 16 3 C -0.15 -0.60 7.90 71.98 0.57 -0.03 16 4 C -0.16 -0.99 8.66 71.98 0.62 -0.36 16 5 N -0.11 -2.00 3.72 -152.27 -0.57 -2.57 16 6 N -0.06 -1.17 12.21 37.02 0.45 -0.72 16 7 N -0.26 -6.20 12.26 -52.36 -0.64 -6.84 16 8 C 0.11 2.94 8.14 137.15 1.12 4.05 16 9 C 0.62 17.27 7.80 86.83 0.68 17.95 16 10 O -0.54 -19.19 16.76 -3.83 -0.06 -19.25 16 11 N -0.68 -15.53 5.07 -445.26 -2.26 -17.79 16 12 C 0.15 3.91 2.46 44.99 0.11 4.02 16 13 C -0.11 -3.34 5.49 30.59 0.17 -3.17 16 14 C -0.12 -4.46 5.50 30.60 0.17 -4.30 16 15 C 0.17 6.59 2.77 44.99 0.12 6.71 16 16 N -0.74 -37.45 5.12 -322.92 -1.65 -39.11 16 17 C -0.23 -13.14 9.93 84.03 0.83 -12.30 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 20 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 21 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 C -0.11 -3.44 5.39 30.59 0.16 -3.27 16 26 C -0.11 -2.38 5.39 30.59 0.16 -2.21 16 27 N -0.26 -6.36 11.85 -52.31 -0.62 -6.98 16 28 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.42 7.51 8.35 -92.70 -0.77 6.73 16 38 H 0.08 2.28 7.58 -2.39 -0.02 2.27 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 44 H 0.37 20.32 7.80 -92.71 -0.72 19.60 16 45 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -75.77 402.17 2.23 -73.54 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.54 Total: 26.89 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.82 Total: 3.92 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -5.01 Total: -134.06 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -75.77 2.23 -73.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026496926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.506 kcal (2) G-P(sol) polarization free energy of solvation -75.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds