Wall clock time and date at job start Tue Mar 31 2020 19:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99945 * 2 1 4 4 C 1.52998 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47274 * 180.02562 * 4 3 2 6 6 N 1.28443 * 125.19012 * 85.68580 * 5 4 3 7 7 C 1.30865 * 110.92832 * 180.02562 * 6 5 4 8 8 C 1.39675 * 107.86081 * 359.97438 * 7 6 5 9 9 C 1.36603 * 125.19358 * 265.95263 * 5 4 3 10 10 C 1.47166 * 126.87928 * 0.02562 * 9 5 4 11 11 O 1.21627 * 120.00180 * 5.74060 * 10 9 5 12 12 N 1.34780 * 119.99906 * 185.73564 * 10 9 5 13 13 C 1.46499 * 120.00201 * 185.08608 * 12 10 9 14 14 C 1.52992 * 109.47350 * 275.00638 * 13 12 10 15 15 C 1.53003 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47205 * 60.00036 * 15 14 13 17 17 N 1.46501 * 109.46966 * 180.02562 * 16 15 14 18 18 C 1.36939 * 119.99584 * 274.99336 * 17 16 15 19 19 H 1.07998 * 120.00052 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99543 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99954 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00091 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47409 * 89.99911 * 22 20 18 24 24 H 1.48501 * 109.47049 * 209.99945 * 22 20 18 25 25 H 1.48501 * 109.47460 * 329.99808 * 22 20 18 26 26 C 1.53002 * 109.46549 * 299.99895 * 16 15 14 27 27 C 1.52994 * 109.47023 * 154.99980 * 13 12 10 28 28 H 1.09001 * 109.47107 * 59.99965 * 1 2 3 29 29 H 1.08997 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46908 * 300.00431 * 1 2 3 31 31 H 1.08998 * 109.47189 * 60.00355 * 3 2 1 32 32 H 1.09005 * 109.47114 * 299.99895 * 3 2 1 33 33 H 1.09002 * 109.47429 * 59.99879 * 4 3 2 34 34 H 1.09005 * 109.46980 * 299.99824 * 4 3 2 35 35 H 1.08005 * 126.07352 * 179.97438 * 7 6 5 36 36 H 1.08002 * 127.32322 * 179.97438 * 8 7 6 37 37 H 0.97003 * 120.00132 * 5.09660 * 12 10 9 38 38 H 1.09007 * 109.46848 * 35.00275 * 13 12 10 39 39 H 1.09000 * 109.47116 * 299.99883 * 14 13 12 40 40 H 1.09000 * 109.47851 * 59.99837 * 14 13 12 41 41 H 1.09000 * 109.47160 * 300.00008 * 15 14 13 42 42 H 1.09006 * 109.47182 * 179.97438 * 15 14 13 43 43 H 1.09000 * 109.47084 * 59.99925 * 16 15 14 44 44 H 0.96993 * 119.99786 * 95.00107 * 17 16 15 45 45 H 0.96992 * 120.00332 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47452 * 299.99805 * 26 16 15 47 47 H 1.09001 * 109.46615 * 180.02562 * 26 16 15 48 48 H 1.08995 * 109.47920 * 300.00500 * 27 13 12 49 49 H 1.09007 * 109.47068 * 60.00430 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 7 4.3607 3.2306 1.0471 7 6 4.8982 4.3798 0.7261 8 6 5.0293 4.4180 -0.6640 9 6 4.5232 3.2108 -1.1133 10 6 4.4282 2.7579 -2.5103 11 8 3.8664 1.7117 -2.7736 12 7 4.9637 3.5024 -3.4980 13 6 4.7733 3.1100 -4.8966 14 6 5.8404 2.0864 -5.2889 15 6 5.6411 1.6762 -6.7494 16 6 5.7631 2.9094 -7.6467 17 7 5.5717 2.5167 -9.0451 18 6 6.6298 2.0438 -9.7744 19 1 7.6053 1.9600 -9.3186 20 6 6.4486 1.6722 -11.0995 21 7 7.4655 1.2172 -11.8004 22 14 4.7615 1.8180 -11.8880 23 1 4.6174 3.1613 -12.5043 24 1 4.6123 0.7748 -12.9343 25 1 3.7133 1.6336 -10.8523 26 6 4.6958 3.9331 -7.2543 27 6 4.8955 4.3435 -5.7934 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8568 0.6438 -0.8908 34 1 3.8574 0.6435 0.8892 35 1 5.1888 5.1602 1.4138 36 1 5.4350 5.2209 -1.2616 37 1 5.4753 4.2979 -3.2828 38 1 3.7841 2.6686 -5.0186 39 1 6.8296 2.5277 -5.1668 40 1 5.7534 1.2075 -4.6500 41 1 4.6520 1.2347 -6.8711 42 1 6.4017 0.9472 -7.0291 43 1 6.7522 3.3509 -7.5250 44 1 4.6955 2.5918 -9.4543 45 1 7.3389 0.9579 -12.7264 46 1 3.7067 3.4916 -7.3760 47 1 4.7824 4.8115 -7.8938 48 1 4.1353 5.0729 -5.5139 49 1 5.8847 4.7850 -5.6713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026512018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:18 Heat of formation + Delta-G solvation = 2.669468 kcal Electronic energy + Delta-G solvation = -29093.429267 eV Core-core repulsion = 25057.498473 eV Total energy + Delta-G solvation = -4035.930794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.91664 -39.96707 -38.37741 -38.04372 -35.21051 -34.22107 -33.18300 -31.54694 -30.66106 -30.50853 -29.69515 -27.78240 -26.70470 -24.34241 -23.67705 -22.94358 -22.46504 -21.81366 -20.77825 -20.31616 -19.64019 -18.38076 -17.49324 -17.07854 -16.50301 -16.48370 -16.25939 -15.86136 -15.21066 -15.13368 -14.78486 -14.64892 -14.36101 -14.14443 -13.89267 -13.87328 -13.49197 -13.23563 -12.97079 -12.70351 -12.50449 -12.23080 -12.05257 -11.94585 -11.77237 -11.73451 -11.21704 -11.17599 -10.92986 -10.89888 -10.71531 -10.31124 -10.27652 -10.14721 -10.06110 -9.86921 -9.61464 -9.57302 -9.44549 -9.10822 -8.89026 -7.26022 -5.76410 -3.11791 0.90435 1.86294 2.24952 2.84633 2.94110 3.37958 3.40881 3.45903 3.52784 4.13547 4.27035 4.47087 4.58431 4.59684 4.73324 4.79575 4.83740 4.90223 4.93478 4.96878 5.06196 5.14027 5.25997 5.28306 5.31362 5.40589 5.43770 5.46921 5.50843 5.58468 5.71392 5.75404 5.88865 6.04318 6.09852 6.11817 6.14702 6.30467 6.32945 6.40476 6.46911 6.60832 6.62885 6.87556 7.03289 7.20057 7.67737 7.89424 8.00297 8.42918 9.21631 9.94325 10.14118 11.42023 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.002287 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.441949 B =12239.648795 C =13306.488744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.057 3.943 4 C 0.118 3.882 5 N -0.255 5.255 6 N -0.278 5.278 7 C 0.000 4.000 8 C -0.188 4.188 9 C -0.032 4.032 10 C 0.587 3.413 11 O -0.533 6.533 12 N -0.707 5.707 13 C 0.148 3.852 14 C -0.125 4.125 15 C -0.132 4.132 16 C 0.181 3.819 17 N -0.750 5.750 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.124 4.124 27 C -0.119 4.119 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.188 0.812 36 H 0.163 0.837 37 H 0.402 0.598 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 7.433 27.531 30.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C -0.021 4.021 4 C -0.002 4.002 5 N -0.044 5.044 6 N -0.110 5.110 7 C -0.176 4.176 8 C -0.217 4.217 9 C -0.161 4.161 10 C 0.371 3.629 11 O -0.410 6.410 12 N -0.358 5.358 13 C 0.044 3.956 14 C -0.164 4.164 15 C -0.173 4.173 16 C 0.072 3.928 17 N -0.391 5.391 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.163 4.163 27 C -0.158 4.158 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.205 0.795 36 H 0.180 0.820 37 H 0.236 0.764 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.645 5.641 28.128 30.599 hybrid contribution -0.828 1.150 -1.172 1.839 sum -11.472 6.791 26.956 30.073 Atomic orbital electron populations 1.22790 0.79989 1.03221 1.00243 1.87803 1.20488 1.26406 1.95524 1.22605 0.92398 0.85820 1.01320 1.21880 0.92689 0.78266 1.07395 1.45520 1.42422 1.14356 1.02089 1.73240 1.18214 1.05793 1.13713 1.23618 1.03168 0.95761 0.95081 1.22290 1.06257 0.97457 0.95720 1.21552 1.09253 0.95301 0.89954 1.16932 0.79049 0.83889 0.82998 1.90833 1.44000 1.22469 1.83700 1.45848 1.54424 1.29166 1.06326 1.21197 1.00792 0.95885 0.77695 1.21904 0.98059 0.98380 0.98051 1.22195 1.02146 1.00647 0.92339 1.20225 0.96590 0.91600 0.84390 1.42794 1.09196 1.78986 1.08171 1.19076 0.90196 1.34870 0.93002 0.89224 1.24680 0.96804 1.01196 0.96585 1.69698 1.29470 1.49804 1.09293 0.86549 0.85318 0.77482 0.79177 1.21147 1.21825 1.20299 1.21803 1.00249 1.00188 0.94037 1.21756 1.02379 0.96213 0.95404 0.93675 0.89045 0.93930 0.92562 0.92281 0.85396 0.87522 0.79494 0.81980 0.76369 0.89318 0.91959 0.92008 0.92586 0.91234 0.92626 0.80702 0.93096 0.92076 0.91147 0.91655 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.97 10.70 -35.23 -0.38 -4.34 16 3 C 0.06 0.55 6.26 37.16 0.23 0.78 16 4 C 0.12 1.18 6.22 -4.04 -0.03 1.16 16 5 N -0.26 -2.72 3.35 -57.14 -0.19 -2.91 16 6 N -0.28 -2.88 11.90 30.59 0.36 -2.52 16 7 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -1.46 10.50 -38.99 -0.41 -1.87 16 9 C -0.03 -0.33 6.96 -82.06 -0.57 -0.90 16 10 C 0.59 6.83 7.74 -12.63 -0.10 6.73 16 11 O -0.53 -7.84 14.35 5.25 0.08 -7.76 16 12 N -0.71 -6.83 5.06 -54.97 -0.28 -7.11 16 13 C 0.15 1.72 2.41 -67.94 -0.16 1.56 16 14 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 15 C -0.13 -2.25 5.50 -26.73 -0.15 -2.40 16 16 C 0.18 3.27 2.77 -67.93 -0.19 3.08 16 17 N -0.75 -17.26 4.92 -53.42 -0.26 -17.52 16 18 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 20 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 21 N -0.93 -29.27 13.97 55.49 0.78 -28.50 16 22 Si 0.88 22.02 27.74 -169.99 -4.71 17.31 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 26 C -0.12 -1.74 5.39 -26.70 -0.14 -1.89 16 27 C -0.12 -1.26 5.39 -26.71 -0.14 -1.41 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.13 1.46 6.22 -51.93 -0.32 1.13 16 34 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.19 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.16 0.74 7.63 -52.49 -0.40 0.34 16 37 H 0.40 2.72 7.69 -40.82 -0.31 2.41 16 38 H 0.09 1.19 7.66 -51.92 -0.40 0.79 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 44 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -34.33 397.61 -7.79 -42.12 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.02 Total: 7.98 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.15 Total: -2.73 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.41 Total: -58.56 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.30 Total: -12.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.33 -7.79 -42.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026512018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.788 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds