Wall clock time and date at job start Tue Mar 31 2020 19:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99945 * 2 1 4 4 C 1.52998 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47274 * 180.02562 * 4 3 2 6 6 N 1.28443 * 125.19012 * 85.68580 * 5 4 3 7 7 C 1.30865 * 110.92832 * 180.02562 * 6 5 4 8 8 C 1.39675 * 107.86081 * 359.97438 * 7 6 5 9 9 C 1.36603 * 125.19358 * 265.95263 * 5 4 3 10 10 C 1.47166 * 126.87928 * 0.02562 * 9 5 4 11 11 O 1.21627 * 120.00180 * 5.74060 * 10 9 5 12 12 N 1.34780 * 119.99906 * 185.73564 * 10 9 5 13 13 C 1.46499 * 120.00201 * 185.08608 * 12 10 9 14 14 C 1.52992 * 109.47350 * 275.00638 * 13 12 10 15 15 C 1.53003 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47205 * 60.00036 * 15 14 13 17 17 N 1.46501 * 109.46966 * 180.02562 * 16 15 14 18 18 C 1.36939 * 119.99584 * 274.99336 * 17 16 15 19 19 H 1.07998 * 120.00052 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99543 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99954 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00091 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47409 * 89.99911 * 22 20 18 24 24 H 1.48501 * 109.47049 * 209.99945 * 22 20 18 25 25 H 1.48501 * 109.47460 * 329.99808 * 22 20 18 26 26 C 1.53002 * 109.46549 * 299.99895 * 16 15 14 27 27 C 1.52994 * 109.47023 * 154.99980 * 13 12 10 28 28 H 1.09001 * 109.47107 * 59.99965 * 1 2 3 29 29 H 1.08997 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46908 * 300.00431 * 1 2 3 31 31 H 1.08998 * 109.47189 * 60.00355 * 3 2 1 32 32 H 1.09005 * 109.47114 * 299.99895 * 3 2 1 33 33 H 1.09002 * 109.47429 * 59.99879 * 4 3 2 34 34 H 1.09005 * 109.46980 * 299.99824 * 4 3 2 35 35 H 1.08005 * 126.07352 * 179.97438 * 7 6 5 36 36 H 1.08002 * 127.32322 * 179.97438 * 8 7 6 37 37 H 0.97003 * 120.00132 * 5.09660 * 12 10 9 38 38 H 1.09007 * 109.46848 * 35.00275 * 13 12 10 39 39 H 1.09000 * 109.47116 * 299.99883 * 14 13 12 40 40 H 1.09000 * 109.47851 * 59.99837 * 14 13 12 41 41 H 1.09000 * 109.47160 * 300.00008 * 15 14 13 42 42 H 1.09006 * 109.47182 * 179.97438 * 15 14 13 43 43 H 1.09000 * 109.47084 * 59.99925 * 16 15 14 44 44 H 0.96993 * 119.99786 * 95.00107 * 17 16 15 45 45 H 0.96992 * 120.00332 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47452 * 299.99805 * 26 16 15 47 47 H 1.09001 * 109.46615 * 180.02562 * 26 16 15 48 48 H 1.08995 * 109.47920 * 300.00500 * 27 13 12 49 49 H 1.09007 * 109.47068 * 60.00430 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 7 4.3607 3.2306 1.0471 7 6 4.8982 4.3798 0.7261 8 6 5.0293 4.4180 -0.6640 9 6 4.5232 3.2108 -1.1133 10 6 4.4282 2.7579 -2.5103 11 8 3.8664 1.7117 -2.7736 12 7 4.9637 3.5024 -3.4980 13 6 4.7733 3.1100 -4.8966 14 6 5.8404 2.0864 -5.2889 15 6 5.6411 1.6762 -6.7494 16 6 5.7631 2.9094 -7.6467 17 7 5.5717 2.5167 -9.0451 18 6 6.6298 2.0438 -9.7744 19 1 7.6053 1.9600 -9.3186 20 6 6.4486 1.6722 -11.0995 21 7 7.4655 1.2172 -11.8004 22 14 4.7615 1.8180 -11.8880 23 1 4.6174 3.1613 -12.5043 24 1 4.6123 0.7748 -12.9343 25 1 3.7133 1.6336 -10.8523 26 6 4.6958 3.9331 -7.2543 27 6 4.8955 4.3435 -5.7934 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8568 0.6438 -0.8908 34 1 3.8574 0.6435 0.8892 35 1 5.1888 5.1602 1.4138 36 1 5.4350 5.2209 -1.2616 37 1 5.4753 4.2979 -3.2828 38 1 3.7841 2.6686 -5.0186 39 1 6.8296 2.5277 -5.1668 40 1 5.7534 1.2075 -4.6500 41 1 4.6520 1.2347 -6.8711 42 1 6.4017 0.9472 -7.0291 43 1 6.7522 3.3509 -7.5250 44 1 4.6955 2.5918 -9.4543 45 1 7.3389 0.9579 -12.7264 46 1 3.7067 3.4916 -7.3760 47 1 4.7824 4.8115 -7.8938 48 1 4.1353 5.0729 -5.5139 49 1 5.8847 4.7850 -5.6713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026512018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:17 Heat of formation + Delta-G solvation = -22.426008 kcal Electronic energy + Delta-G solvation = -29094.517488 eV Core-core repulsion = 25057.498473 eV Total energy + Delta-G solvation = -4037.019015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.59954 -40.93349 -39.26863 -39.07327 -36.54724 -35.13925 -34.54116 -33.07728 -31.82769 -31.67915 -30.36965 -29.15769 -27.32291 -25.58866 -24.72703 -24.09127 -23.58092 -22.74455 -21.89728 -21.34219 -20.78746 -19.62779 -18.99773 -17.82884 -17.37334 -17.19358 -17.09457 -16.84120 -16.60257 -16.13910 -15.95673 -15.60841 -15.43271 -15.12057 -14.96858 -14.84512 -14.59134 -14.50823 -14.34210 -13.90814 -13.66114 -13.39654 -13.16015 -13.09495 -12.90489 -12.65799 -12.41514 -12.38844 -12.30768 -12.04441 -11.98460 -11.85201 -11.78688 -11.47883 -11.21150 -11.13816 -10.87739 -10.84868 -10.39788 -10.13053 -9.98721 -9.28208 -8.00548 -5.33189 0.16538 1.16130 1.38588 1.41984 1.49167 1.62546 2.02661 2.13601 2.50029 2.85136 3.30384 3.45400 3.47773 3.64647 3.74736 3.77307 3.86771 3.94385 4.07225 4.13830 4.25618 4.32737 4.36901 4.38302 4.40098 4.48446 4.53533 4.53927 4.59778 4.63027 4.67255 4.75841 4.84169 4.88469 4.95728 5.10966 5.16068 5.25372 5.28038 5.41757 5.50389 5.53073 5.61485 5.65713 5.80480 5.95850 6.24390 6.42195 7.00615 7.10263 7.10868 7.88305 8.06508 9.21224 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.002287 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.441949 B =12239.648795 C =13306.488744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.066 3.934 4 C 0.120 3.880 5 N -0.268 5.268 6 N -0.300 5.300 7 C 0.001 3.999 8 C -0.168 4.168 9 C -0.057 4.057 10 C 0.586 3.414 11 O -0.572 6.572 12 N -0.691 5.691 13 C 0.157 3.843 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.174 3.826 17 N -0.754 5.754 18 C -0.225 4.225 19 H 0.056 0.944 20 C -0.069 4.069 21 N -0.986 5.986 22 Si 0.956 3.044 23 H -0.275 1.275 24 H -0.300 1.300 25 H -0.253 1.253 26 C -0.117 4.117 27 C -0.107 4.107 28 H 0.044 0.956 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.222 0.778 36 H 0.199 0.801 37 H 0.420 0.580 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.034 0.966 43 H 0.048 0.952 44 H 0.364 0.636 45 H 0.256 0.744 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 10.353 29.487 33.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.012 4.012 4 C -0.001 4.001 5 N -0.057 5.057 6 N -0.132 5.132 7 C -0.175 4.175 8 C -0.197 4.197 9 C -0.185 4.185 10 C 0.372 3.628 11 O -0.451 6.451 12 N -0.342 5.342 13 C 0.052 3.948 14 C -0.154 4.154 15 C -0.165 4.165 16 C 0.066 3.934 17 N -0.396 5.396 18 C -0.356 4.356 19 H 0.074 0.926 20 C -0.260 4.260 21 N -0.637 5.637 22 Si 0.783 3.217 23 H -0.201 1.201 24 H -0.227 1.227 25 H -0.178 1.178 26 C -0.155 4.155 27 C -0.145 4.145 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.238 0.762 36 H 0.216 0.784 37 H 0.258 0.742 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.198 0.802 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.114 0.886 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.183 8.616 30.150 33.640 hybrid contribution -0.258 0.244 -1.661 1.698 sum -12.441 8.860 28.489 32.325 Atomic orbital electron populations 1.22991 0.78534 1.04406 1.00957 1.87776 1.22205 1.26832 1.95618 1.22493 0.92206 0.85573 1.00897 1.21777 0.92919 0.78606 1.06758 1.45543 1.43258 1.14525 1.02365 1.73234 1.19103 1.06881 1.14007 1.24290 1.01770 0.95511 0.95939 1.22773 1.04103 0.96867 0.95908 1.21578 1.11121 0.96598 0.89195 1.17177 0.78419 0.83383 0.83852 1.90822 1.45743 1.24236 1.84334 1.45581 1.54134 1.29427 1.05049 1.20941 0.98912 0.95856 0.79074 1.21775 0.99636 0.98813 0.95161 1.22014 1.00473 0.99427 0.94621 1.20500 0.98022 0.92897 0.81942 1.42852 1.08039 1.78790 1.09942 1.19036 0.90194 1.33201 0.93159 0.92641 1.25520 1.01081 1.01946 0.97445 1.69887 1.32161 1.52125 1.09573 0.85396 0.80716 0.77371 0.78209 1.20131 1.22721 1.17793 1.21708 0.98440 0.98832 0.96567 1.21683 1.04595 0.95904 0.92324 0.93693 0.87720 0.92449 0.91748 0.93675 0.87325 0.86748 0.76202 0.78385 0.74213 0.90910 0.90857 0.93351 0.93322 0.94666 0.93409 0.80249 0.93493 0.91893 0.90502 0.88567 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.47 10.70 -148.98 -1.59 -10.06 16 3 C 0.07 1.30 6.26 71.98 0.45 1.75 16 4 C 0.12 2.46 6.22 86.38 0.54 3.00 16 5 N -0.27 -5.49 3.35 -334.69 -1.12 -6.61 16 6 N -0.30 -5.71 11.90 -57.13 -0.68 -6.39 16 7 C 0.00 0.01 12.03 85.18 1.02 1.04 16 8 C -0.17 -1.98 10.50 22.66 0.24 -1.75 16 9 C -0.06 -1.08 6.96 40.79 0.28 -0.80 16 10 C 0.59 12.90 7.74 86.59 0.67 13.57 16 11 O -0.57 -17.01 14.35 -4.12 -0.06 -17.07 16 12 N -0.69 -11.45 5.06 -446.07 -2.26 -13.70 16 13 C 0.16 3.30 2.41 44.99 0.11 3.41 16 14 C -0.11 -3.06 5.49 30.59 0.17 -2.89 16 15 C -0.12 -4.29 5.50 30.60 0.17 -4.13 16 16 C 0.17 6.15 2.77 44.99 0.12 6.28 16 17 N -0.75 -34.45 4.92 -322.93 -1.59 -36.04 16 18 C -0.22 -12.76 10.41 84.03 0.87 -11.88 16 19 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.99 -63.79 13.97 21.65 0.30 -63.49 16 22 Si 0.96 45.71 27.74 68.60 1.90 47.62 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 25 H -0.25 -10.97 6.52 99.48 0.65 -10.33 16 26 C -0.12 -2.96 5.39 30.61 0.17 -2.79 16 27 C -0.11 -1.84 5.39 30.61 0.17 -1.68 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.11 2.64 6.22 -2.39 -0.01 2.62 16 34 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.22 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.20 0.72 7.63 -2.91 -0.02 0.70 16 37 H 0.42 3.89 7.69 -92.71 -0.71 3.18 16 38 H 0.07 1.84 7.66 -2.38 -0.02 1.82 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.44 8.09 -2.39 -0.02 1.42 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 44 H 0.36 16.00 5.66 -92.71 -0.52 15.47 16 45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 1.28 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -78.46 397.61 1.26 -77.20 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.34 Total: 27.40 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 6.69 Total: 1.13 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -5.34 Total: -126.22 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.65 Total: -27.13 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.62 kcal Total: -78.46 1.26 -77.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026512018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.770 kcal (2) G-P(sol) polarization free energy of solvation -78.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds