Wall clock time and date at job start Tue Mar 31 2020 19:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42909 * 113.99943 * 2 1 4 4 C 1.53001 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46744 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88307 * 124.97531 * 5 4 3 7 7 C 1.35360 * 107.22666 * 179.72024 * 6 5 4 8 8 C 1.41503 * 105.50393 * 0.41676 * 7 6 5 9 9 C 1.47704 * 126.51758 * 179.84042 * 8 7 6 10 10 O 1.21577 * 120.00062 * 359.71244 * 9 8 7 11 11 N 1.34777 * 120.00014 * 179.71466 * 9 8 7 12 12 C 1.46500 * 120.00270 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47473 * 154.99797 * 12 11 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 N 1.46506 * 109.47042 * 300.00642 * 15 14 13 17 17 C 1.36940 * 119.99462 * 204.99934 * 16 15 14 18 18 H 1.07992 * 120.00256 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99328 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00223 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99581 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46877 * 90.00121 * 21 19 17 23 23 H 1.48495 * 109.46921 * 210.00066 * 21 19 17 24 24 H 1.48496 * 109.47094 * 329.99890 * 21 19 17 25 25 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 26 26 C 1.52999 * 109.46944 * 275.00142 * 12 11 9 27 27 N 1.28465 * 124.88476 * 304.97269 * 5 4 3 28 28 H 1.09001 * 109.47051 * 299.99464 * 1 2 3 29 29 H 1.08997 * 109.47875 * 59.99865 * 1 2 3 30 30 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46758 * 60.00064 * 3 2 1 32 32 H 1.09000 * 109.47169 * 300.00534 * 3 2 1 33 33 H 1.08991 * 109.46940 * 60.00219 * 4 3 2 34 34 H 1.08998 * 109.46555 * 299.99884 * 4 3 2 35 35 H 1.08002 * 126.38645 * 359.97438 * 6 5 4 36 36 H 1.08001 * 127.24917 * 180.25335 * 7 6 5 37 37 H 0.97000 * 120.00239 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47129 * 34.99540 * 12 11 9 39 39 H 1.09002 * 109.47153 * 59.99757 * 13 12 11 40 40 H 1.09001 * 109.46832 * 299.99948 * 13 12 11 41 41 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 42 42 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 43 43 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 44 44 H 0.97000 * 120.00279 * 24.99489 * 16 15 14 45 45 H 0.97000 * 120.00212 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.47153 * 60.00231 * 25 15 14 47 47 H 1.09001 * 109.47289 * 180.02562 * 25 15 14 48 48 H 1.09000 * 109.47486 * 59.99569 * 26 12 11 49 49 H 1.09002 * 109.46716 * 299.99651 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0257 2.9699 0.9076 7 6 5.3398 4.2421 0.5682 8 6 4.5726 4.5260 -0.5864 9 6 4.5580 5.7952 -1.3418 10 8 5.2507 6.7263 -0.9794 11 7 3.7769 5.9210 -2.4329 12 6 3.7628 7.1796 -3.1825 13 6 3.3462 6.9070 -4.6292 14 6 3.3321 8.2214 -5.4122 15 6 2.3362 9.1881 -4.7683 16 7 0.9971 8.5939 -4.7871 17 6 -0.1098 9.3996 -4.7585 18 1 0.0043 10.4729 -4.7216 19 6 -1.3785 8.8367 -4.7769 20 7 -1.5175 7.5287 -4.8224 21 14 -2.8886 9.9357 -4.7372 22 1 -3.2900 10.2756 -6.1258 23 1 -4.0018 9.2229 -4.0605 24 1 -2.5743 11.1820 -3.9936 25 6 2.7528 9.4607 -3.3216 26 6 2.7666 8.1458 -2.5383 27 7 3.8778 3.4406 -0.8629 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8566 0.6441 -0.8908 34 1 3.8573 0.6437 0.8891 35 1 5.4203 2.4143 1.7454 36 1 6.0287 4.9025 1.0740 37 1 3.2239 5.1783 -2.7219 38 1 4.7589 7.6221 -3.1685 39 1 2.3501 6.4646 -4.6433 40 1 4.0560 6.2187 -5.0881 41 1 4.3283 8.6634 -5.3981 42 1 3.0349 8.0272 -6.4428 43 1 2.3258 10.1243 -5.3262 44 1 0.8946 7.6299 -4.8199 45 1 -2.4041 7.1353 -4.8348 46 1 3.7490 9.9027 -3.3075 47 1 2.0430 10.1489 -2.8626 48 1 3.0634 8.3400 -1.5076 49 1 1.7705 7.7033 -2.5524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026525769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:23 Heat of formation + Delta-G solvation = 2.502169 kcal Electronic energy + Delta-G solvation = -29157.601267 eV Core-core repulsion = 25121.663219 eV Total energy + Delta-G solvation = -4035.938048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.85856 -39.61016 -38.40283 -37.83651 -34.55830 -34.25560 -32.77188 -31.03659 -30.35422 -30.19382 -29.63372 -27.67096 -26.69159 -24.61558 -23.54478 -22.66807 -22.11894 -21.62656 -21.12360 -19.86317 -18.63025 -17.95657 -17.19370 -17.13519 -16.64395 -16.37264 -15.96455 -15.87106 -15.18769 -14.76649 -14.51516 -14.39819 -14.05705 -13.93594 -13.70286 -13.53811 -13.41509 -13.26393 -12.79249 -12.44589 -12.20311 -12.07685 -11.87245 -11.77199 -11.69084 -11.58206 -11.05204 -10.90256 -10.76429 -10.64024 -10.32631 -10.17439 -10.13741 -10.09899 -9.76407 -9.62069 -9.47680 -9.46171 -9.26726 -8.84078 -8.65468 -6.89029 -5.73198 -2.99918 1.47587 1.95689 2.02799 3.27576 3.42854 3.45264 3.50972 3.52003 3.53265 4.07152 4.38550 4.54467 4.56344 4.63272 4.71031 4.94341 4.97062 5.05938 5.16508 5.19404 5.29027 5.30576 5.32555 5.47807 5.52686 5.59859 5.62121 5.78277 5.86252 5.91657 6.05855 6.11200 6.16829 6.22006 6.28201 6.41471 6.46635 6.57454 6.59681 6.70584 6.76027 6.85570 6.97620 7.11475 7.16180 7.57232 7.75016 7.85597 8.38952 8.46555 9.57761 10.17142 10.52054 11.49783 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.002964 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.070895 B = 9443.918429 C =11738.261944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.048 3.952 4 C 0.126 3.874 5 N -0.283 5.283 6 C -0.017 4.017 7 C -0.178 4.178 8 C -0.009 4.009 9 C 0.602 3.398 10 O -0.537 6.537 11 N -0.708 5.708 12 C 0.149 3.851 13 C -0.123 4.123 14 C -0.117 4.117 15 C 0.171 3.829 16 N -0.720 5.720 17 C -0.232 4.232 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.903 3.097 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.283 1.283 25 C -0.130 4.130 26 C -0.118 4.118 27 N -0.259 5.259 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.183 0.817 36 H 0.163 0.837 37 H 0.405 0.595 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.383 0.617 45 H 0.253 0.747 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.391 -15.459 10.739 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.030 4.030 4 C 0.005 3.995 5 N -0.073 5.073 6 C -0.159 4.159 7 C -0.206 4.206 8 C -0.170 4.170 9 C 0.386 3.614 10 O -0.412 6.412 11 N -0.357 5.357 12 C 0.046 3.954 13 C -0.161 4.161 14 C -0.156 4.156 15 C 0.061 3.939 16 N -0.363 5.363 17 C -0.364 4.364 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.735 3.265 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.208 1.208 25 C -0.171 4.171 26 C -0.157 4.157 27 N -0.095 5.095 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.200 0.800 36 H 0.181 0.819 37 H 0.240 0.760 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.218 0.782 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.030 -15.377 10.226 22.040 hybrid contribution -0.960 0.304 0.643 1.195 sum 11.071 -15.073 10.869 21.631 Atomic orbital electron populations 1.22810 0.79566 1.03170 1.00802 1.87748 1.20885 1.26624 1.95681 1.22664 0.91967 0.85701 1.02649 1.21674 0.93232 0.78461 1.06117 1.45318 1.31307 1.11523 1.19142 1.22872 0.97918 0.96749 0.98392 1.21800 1.04478 0.95944 0.98414 1.22095 1.01239 0.94084 0.99578 1.16870 0.79811 0.84710 0.80018 1.90782 1.43004 1.39345 1.68081 1.46022 1.44630 1.17187 1.27900 1.21101 1.00288 0.83340 0.90676 1.21736 1.02219 0.98623 0.93521 1.21724 0.99225 0.95294 0.99358 1.20263 0.85950 0.94929 0.92759 1.42478 0.99196 1.06238 1.88365 1.19268 0.85073 0.90249 1.41785 0.91281 1.24687 0.97330 0.95646 1.03415 1.69648 1.21871 1.08632 1.58257 0.86234 0.83280 0.79537 0.77445 1.21873 1.21956 1.20850 1.22107 0.99481 0.96412 0.99052 1.21757 0.99807 0.95945 0.98180 1.73519 1.22505 0.97730 1.15750 0.93726 0.93254 0.89119 0.92409 0.90960 0.87862 0.87006 0.80019 0.81911 0.76021 0.89971 0.90464 0.92346 0.92273 0.91503 0.93371 0.78188 0.93711 0.93627 0.91960 0.93073 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.35 10.70 -35.23 -0.38 -3.73 16 3 C 0.05 0.39 6.04 37.16 0.22 0.61 16 4 C 0.13 0.84 6.77 -4.04 -0.03 0.82 16 5 N -0.28 -2.73 3.41 -61.33 -0.21 -2.94 16 6 C -0.02 -0.15 11.40 -17.17 -0.20 -0.34 16 7 C -0.18 -2.04 10.81 -39.36 -0.43 -2.46 16 8 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 9 C 0.60 9.79 7.79 -12.39 -0.10 9.70 16 10 O -0.54 -10.13 16.59 5.30 0.09 -10.04 16 11 N -0.71 -10.91 5.07 -54.79 -0.28 -11.18 16 12 C 0.15 2.43 2.45 -67.93 -0.17 2.26 16 13 C -0.12 -1.93 5.22 -26.73 -0.14 -2.07 16 14 C -0.12 -1.91 5.61 -26.73 -0.15 -2.06 16 15 C 0.17 3.36 3.10 -67.93 -0.21 3.15 16 16 N -0.72 -17.49 4.28 -53.42 -0.23 -17.72 16 17 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 19 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 21 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.13 -2.41 5.61 -26.70 -0.15 -2.56 16 26 C -0.12 -2.19 5.34 -26.70 -0.14 -2.33 16 27 N -0.26 -3.29 11.36 33.42 0.38 -2.92 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 0.44 8.04 -51.93 -0.42 0.02 16 35 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.41 5.82 8.33 -40.82 -0.34 5.48 16 38 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 39 H 0.08 1.36 6.51 -51.93 -0.34 1.03 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 44 H 0.38 9.78 6.06 -40.82 -0.25 9.53 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.08 1.65 7.61 -51.93 -0.39 1.26 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -33.53 401.15 -8.09 -41.62 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -8.01 Total: 12.25 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.20 Total: -1.71 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.39 Total: -61.85 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.29 Total: -13.77 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.53 -8.09 -41.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026525769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.126 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds