Wall clock time and date at job start Tue Mar 31 2020 19:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42909 * 113.99943 * 2 1 4 4 C 1.53001 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46744 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88307 * 124.97531 * 5 4 3 7 7 C 1.35360 * 107.22666 * 179.72024 * 6 5 4 8 8 C 1.41503 * 105.50393 * 0.41676 * 7 6 5 9 9 C 1.47704 * 126.51758 * 179.84042 * 8 7 6 10 10 O 1.21577 * 120.00062 * 359.71244 * 9 8 7 11 11 N 1.34777 * 120.00014 * 179.71466 * 9 8 7 12 12 C 1.46500 * 120.00270 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47473 * 154.99797 * 12 11 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 N 1.46506 * 109.47042 * 300.00642 * 15 14 13 17 17 C 1.36940 * 119.99462 * 204.99934 * 16 15 14 18 18 H 1.07992 * 120.00256 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99328 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00223 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99581 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46877 * 90.00121 * 21 19 17 23 23 H 1.48495 * 109.46921 * 210.00066 * 21 19 17 24 24 H 1.48496 * 109.47094 * 329.99890 * 21 19 17 25 25 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 26 26 C 1.52999 * 109.46944 * 275.00142 * 12 11 9 27 27 N 1.28465 * 124.88476 * 304.97269 * 5 4 3 28 28 H 1.09001 * 109.47051 * 299.99464 * 1 2 3 29 29 H 1.08997 * 109.47875 * 59.99865 * 1 2 3 30 30 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46758 * 60.00064 * 3 2 1 32 32 H 1.09000 * 109.47169 * 300.00534 * 3 2 1 33 33 H 1.08991 * 109.46940 * 60.00219 * 4 3 2 34 34 H 1.08998 * 109.46555 * 299.99884 * 4 3 2 35 35 H 1.08002 * 126.38645 * 359.97438 * 6 5 4 36 36 H 1.08001 * 127.24917 * 180.25335 * 7 6 5 37 37 H 0.97000 * 120.00239 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47129 * 34.99540 * 12 11 9 39 39 H 1.09002 * 109.47153 * 59.99757 * 13 12 11 40 40 H 1.09001 * 109.46832 * 299.99948 * 13 12 11 41 41 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 42 42 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 43 43 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 44 44 H 0.97000 * 120.00279 * 24.99489 * 16 15 14 45 45 H 0.97000 * 120.00212 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.47153 * 60.00231 * 25 15 14 47 47 H 1.09001 * 109.47289 * 180.02562 * 25 15 14 48 48 H 1.09000 * 109.47486 * 59.99569 * 26 12 11 49 49 H 1.09002 * 109.46716 * 299.99651 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0257 2.9699 0.9076 7 6 5.3398 4.2421 0.5682 8 6 4.5726 4.5260 -0.5864 9 6 4.5580 5.7952 -1.3418 10 8 5.2507 6.7263 -0.9794 11 7 3.7769 5.9210 -2.4329 12 6 3.7628 7.1796 -3.1825 13 6 3.3462 6.9070 -4.6292 14 6 3.3321 8.2214 -5.4122 15 6 2.3362 9.1881 -4.7683 16 7 0.9971 8.5939 -4.7871 17 6 -0.1098 9.3996 -4.7585 18 1 0.0043 10.4729 -4.7216 19 6 -1.3785 8.8367 -4.7769 20 7 -1.5175 7.5287 -4.8224 21 14 -2.8886 9.9357 -4.7372 22 1 -3.2900 10.2756 -6.1258 23 1 -4.0018 9.2229 -4.0605 24 1 -2.5743 11.1820 -3.9936 25 6 2.7528 9.4607 -3.3216 26 6 2.7666 8.1458 -2.5383 27 7 3.8778 3.4406 -0.8629 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8566 0.6441 -0.8908 34 1 3.8573 0.6437 0.8891 35 1 5.4203 2.4143 1.7454 36 1 6.0287 4.9025 1.0740 37 1 3.2239 5.1783 -2.7219 38 1 4.7589 7.6221 -3.1685 39 1 2.3501 6.4646 -4.6433 40 1 4.0560 6.2187 -5.0881 41 1 4.3283 8.6634 -5.3981 42 1 3.0349 8.0272 -6.4428 43 1 2.3258 10.1243 -5.3262 44 1 0.8946 7.6299 -4.8199 45 1 -2.4041 7.1353 -4.8348 46 1 3.7490 9.9027 -3.3075 47 1 2.0430 10.1489 -2.8626 48 1 3.0634 8.3400 -1.5076 49 1 1.7705 7.7033 -2.5524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026525769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:22 Heat of formation + Delta-G solvation = -20.849655 kcal Electronic energy + Delta-G solvation = -29158.613878 eV Core-core repulsion = 25121.663219 eV Total energy + Delta-G solvation = -4036.950659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.68344 -40.93953 -39.33315 -38.99038 -36.13812 -35.02197 -34.51703 -32.28253 -31.64497 -31.62551 -30.57639 -29.18244 -27.35537 -25.78161 -25.30909 -23.70300 -23.46455 -22.50895 -22.32646 -21.01600 -20.03143 -19.23159 -18.87099 -17.98321 -17.45812 -17.24025 -17.04966 -16.68077 -16.57683 -16.21798 -15.86290 -15.59784 -15.31465 -15.27853 -15.02364 -14.75430 -14.48134 -14.28661 -14.08550 -13.62373 -13.51846 -13.27139 -13.05453 -13.01285 -12.85087 -12.64916 -12.62516 -12.36640 -12.22493 -12.08425 -11.91483 -11.88599 -11.71421 -11.28448 -11.22076 -11.08026 -10.81182 -10.78913 -10.34792 -10.12697 -9.94866 -8.92110 -7.89943 -5.15231 0.49063 1.16759 1.33112 1.47188 1.47789 1.55836 2.15766 2.36702 2.58789 2.75709 3.37486 3.43334 3.71660 3.81013 3.81404 3.91805 3.97199 4.04305 4.15407 4.16535 4.21293 4.39187 4.42420 4.43784 4.46249 4.60161 4.61845 4.65189 4.67289 4.69276 4.73908 4.76571 4.81645 4.84998 5.00994 5.13477 5.24040 5.30993 5.32366 5.32840 5.47976 5.55492 5.62348 5.63210 5.81123 5.97688 6.33581 6.44232 6.86983 7.15818 7.40161 8.19294 8.42741 9.33594 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.002964 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.070895 B = 9443.918429 C =11738.261944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.278 5.278 6 C 0.010 3.990 7 C -0.201 4.201 8 C -0.041 4.041 9 C 0.600 3.400 10 O -0.570 6.570 11 N -0.705 5.705 12 C 0.158 3.842 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.164 3.836 16 N -0.729 5.729 17 C -0.231 4.231 18 H 0.071 0.929 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.964 3.036 22 H -0.288 1.288 23 H -0.299 1.299 24 H -0.274 1.274 25 C -0.123 4.123 26 C -0.108 4.108 27 N -0.279 5.279 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.151 0.849 35 H 0.233 0.767 36 H 0.167 0.833 37 H 0.409 0.591 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.375 0.625 45 H 0.248 0.752 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.924 -16.640 11.597 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.068 5.068 6 C -0.132 4.132 7 C -0.229 4.229 8 C -0.200 4.200 9 C 0.385 3.615 10 O -0.448 6.448 11 N -0.354 5.354 12 C 0.054 3.946 13 C -0.152 4.152 14 C -0.148 4.148 15 C 0.055 3.945 16 N -0.370 5.370 17 C -0.363 4.363 18 H 0.089 0.911 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.795 3.205 22 H -0.216 1.216 23 H -0.226 1.226 24 H -0.199 1.199 25 C -0.163 4.163 26 C -0.147 4.147 27 N -0.116 5.116 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.169 0.831 35 H 0.249 0.751 36 H 0.185 0.815 37 H 0.245 0.755 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.208 0.792 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.584 -16.542 11.071 24.099 hybrid contribution -1.406 0.613 0.433 1.594 sum 12.178 -15.929 11.505 23.117 Atomic orbital electron populations 1.22958 0.78912 1.04338 1.00723 1.87729 1.21680 1.26619 1.95657 1.22600 0.93180 0.85498 1.01517 1.21964 0.91956 0.77173 1.08420 1.45657 1.30901 1.11752 1.18440 1.23545 0.95796 0.95672 0.98221 1.22035 1.05088 0.97605 0.98141 1.21913 1.03369 0.93781 1.00963 1.17234 0.79057 0.85354 0.79818 1.90743 1.44352 1.40726 1.68934 1.45979 1.44595 1.16942 1.27880 1.20943 0.99466 0.83292 0.90856 1.21652 1.01552 0.98836 0.93170 1.21664 0.99629 0.94688 0.98841 1.20509 0.84780 0.95622 0.93554 1.42638 1.00430 1.05712 1.88214 1.19618 0.86180 0.90714 1.39832 0.91058 1.25410 1.00007 0.96846 1.04507 1.69796 1.21880 1.10107 1.60179 0.85263 0.79846 0.78109 0.77331 1.21551 1.22566 1.19898 1.22004 1.00373 0.96000 0.97953 1.21618 0.98589 0.96482 0.98039 1.73465 1.22903 0.98114 1.17112 0.93159 0.94026 0.87387 0.92504 0.93257 0.87164 0.83131 0.75088 0.81502 0.75536 0.89533 0.92835 0.89691 0.89115 0.91517 0.93505 0.79161 0.94339 0.90778 0.94160 0.93977 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.40 -6.29 10.70 -148.98 -1.59 -7.88 16 3 C 0.05 0.76 6.04 71.98 0.44 1.20 16 4 C 0.12 1.33 6.77 86.38 0.58 1.92 16 5 N -0.28 -4.75 3.41 -347.95 -1.19 -5.93 16 6 C 0.01 0.14 11.40 83.54 0.95 1.09 16 7 C -0.20 -4.34 10.81 22.41 0.24 -4.10 16 8 C -0.04 -1.15 7.13 42.46 0.30 -0.85 16 9 C 0.60 19.86 7.79 86.74 0.68 20.54 16 10 O -0.57 -21.84 16.59 -3.96 -0.07 -21.91 16 11 N -0.70 -22.10 5.07 -445.54 -2.26 -24.36 16 12 C 0.16 5.12 2.45 44.99 0.11 5.23 16 13 C -0.11 -3.49 5.22 30.59 0.16 -3.33 16 14 C -0.11 -3.41 5.61 30.60 0.17 -3.24 16 15 C 0.16 6.37 3.10 44.99 0.14 6.51 16 16 N -0.73 -36.01 4.28 -322.94 -1.38 -37.39 16 17 C -0.23 -12.82 9.93 84.03 0.83 -11.99 16 18 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 19 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 20 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 21 Si 0.96 46.79 29.55 68.60 2.03 48.81 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 25 C -0.12 -4.54 5.61 30.61 0.17 -4.37 16 26 C -0.11 -4.11 5.34 30.61 0.16 -3.94 16 27 N -0.28 -6.95 11.36 -48.18 -0.55 -7.50 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.97 8.08 -2.39 -0.02 0.95 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.15 0.50 8.04 -2.39 -0.02 0.48 16 35 H 0.23 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.41 12.13 8.33 -92.71 -0.77 11.36 16 38 H 0.09 2.79 7.58 -2.39 -0.02 2.77 16 39 H 0.05 1.92 6.51 -2.39 -0.02 1.90 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.84 8.08 -2.39 -0.02 1.83 16 44 H 0.37 19.71 6.06 -92.71 -0.56 19.15 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.04 1.94 7.61 -2.39 -0.02 1.92 16 Total: -1.00 -74.85 401.15 1.56 -73.29 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.38 Total: 39.29 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 6.66 Total: 2.37 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -5.09 Total: -133.98 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -1.66 Total: -29.79 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -74.85 1.56 -73.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026525769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.443 kcal (2) G-P(sol) polarization free energy of solvation -74.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds